genome.fa.s14.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  104  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29440220--29440333	18	6.7	18	76	13	125	28	0	22	48	1.51
29440207--29440333	65	2.0	65	95	0	227	29	0	23	46	1.53
29440329--29440392	25	2.5	26	84	2	94	35	12	1	50	1.50
29440801--29440835	18	1.9	18	88	0	52	31	8	34	25	1.86
29441487--29441511	7	3.6	7	100	0	50	60	12	0	28	1.32
29442656--29442769	51	2.3	51	92	1	194	41	0	30	28	1.56
29458454--29458478	13	1.9	13	100	0	50	32	20	16	32	1.94
29459024--29459202	27	6.6	27	82	7	184	27	15	27	29	1.96
29459026--29459181	82	1.9	81	86	3	224	27	15	28	28	1.96
29459022--29459202	82	2.2	81	81	2	220	27	14	27	29	1.96
29466353--29466377	13	1.9	13	100	0	50	32	20	16	32	1.94
29466923--29467101	27	6.6	27	82	7	184	27	15	27	29	1.96
29466925--29467080	82	1.9	81	86	3	224	27	15	28	28	1.96
29466921--29467101	82	2.2	81	81	2	220	27	14	27	29	1.96
29474321--29474431	25	4.5	25	75	5	100	22	21	22	33	1.97
29483208--29483276	33	2.1	33	91	0	111	42	2	24	30	1.69
29491619--29491680	31	2.0	31	100	0	124	32	9	16	41	1.80
29492224--29492275	19	2.7	19	82	8	61	78	13	7	0	0.94
29492260--29492318	22	2.6	23	82	12	86	74	10	13	1	1.14
29492280--29492339	29	2.1	29	87	6	88	75	8	13	3	1.16
29495378--29495463	32	2.7	32	96	1	156	30	10	13	45	1.78
29503154--29503218	20	3.2	20	70	8	60	40	13	29	16	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29503144--29503271	40	3.2	40	87	0	175	37	15	30	16	1.90
29503156--29503285	40	3.2	40	76	10	131	38	16	28	16	1.90
29514338--29514575	39	6.1	39	83	4	302	17	34	17	30	1.93
29514336--29514573	77	3.1	77	80	7	293	18	34	16	30	1.93
29514338--29514575	116	2.0	117	86	5	331	17	34	17	30	1.93
29514515--29514594	19	4.2	19	71	15	65	12	31	18	37	1.88
29521406--29521489	25	3.3	25	69	9	71	23	5	30	39	1.79
29542236--29542310	39	1.9	37	84	12	98	48	2	4	45	1.35
29549405--29549580	45	4.0	45	84	1	230	27	15	24	32	1.95
29550105--29550148	22	2.0	22	100	0	88	31	4	36	27	1.77
29550228--29550298	35	2.0	35	100	0	142	33	11	26	28	1.91
29556151--29557056	457	2.0	457	97	0	1713	36	11	17	34	1.87
29559928--29559978	20	2.5	20	82	17	70	45	19	7	27	1.78
29567877--29567945	29	2.4	29	85	2	86	33	27	10	28	1.89
29572630--29572822	50	3.7	50	82	6	190	26	20	29	23	1.99
29579117--29579228	50	2.2	50	82	0	143	28	21	28	21	1.99
29581286--29581386	20	5.1	19	76	13	78	42	18	26	11	1.85
29585382--29585434	16	3.1	16	86	10	61	24	32	0	43	1.55
29585392--29585434	20	2.2	20	95	0	77	23	27	0	48	1.51
29587703--29587774	20	3.6	20	72	7	56	16	33	16	33	1.92
29595690--29595749	26	2.3	26	85	2	75	18	25	20	36	1.94
29595859--29595919	28	2.2	28	90	0	95	24	21	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29601579--29601639	20	3.1	19	75	17	61	9	29	22	37	1.87
29602664--29602718	28	2.0	28	92	0	92	47	25	3	23	1.68
29608594--29608645	17	3.1	17	73	13	54	59	1	0	38	1.08
29609303--29609329	3	9.0	3	100	0	54	33	0	0	66	0.92
29609481--29609511	12	2.6	12	89	0	53	83	6	0	9	0.79
29612852--29612896	16	2.8	16	86	3	63	57	2	0	40	1.11
29612852--29612889	8	4.6	8	90	3	58	55	2	0	42	1.14
29618355--29618398	18	2.4	18	92	0	70	34	29	2	34	1.70
29619861--29619906	22	2.1	22	88	8	67	41	13	4	41	1.63
29629152--29629199	24	2.1	22	88	7	69	58	0	2	39	1.10
29629308--29629573	43	6.3	43	86	5	321	27	32	16	22	1.96
29629308--29629575	86	3.2	86	87	3	355	28	32	16	22	1.96
29629850--29629947	45	2.2	44	87	5	144	44	9	12	33	1.73
29632727--29632777	7	7.1	7	78	10	50	52	0	43	3	1.19
29633752--29633784	15	2.3	15	89	5	50	36	30	0	33	1.58
29634180--29634441	41	6.1	41	82	11	299	28	29	20	21	1.98
29634262--29634441	83	2.2	82	91	1	288	28	30	20	20	1.98
29639140--29639192	19	2.7	20	77	14	56	56	3	7	32	1.45
29639609--29639645	19	1.9	19	88	0	56	32	0	0	67	0.91
29640197--29640441	120	2.0	121	97	0	465	54	9	11	24	1.65
29646745--29646778	15	2.2	16	89	5	52	38	8	14	38	1.78
29649334--29649362	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29659381--29659475	48	2.0	48	95	0	172	44	10	27	17	1.82
29659842--29659880	13	2.9	13	88	7	60	43	5	12	38	1.65
29659844--29659918	29	2.6	27	76	12	69	46	5	10	37	1.61
29660141--29660332	35	5.7	33	83	5	217	20	21	16	41	1.91
29660136--29660332	67	2.9	65	77	10	216	20	21	16	42	1.89
29663220--29663281	14	4.2	14	72	11	52	20	6	0	72	1.06
29663239--29663277	3	12.7	3	89	5	60	30	2	0	66	1.05
29663238--29663278	19	2.2	19	95	0	73	29	2	0	68	1.03
29663242--29663274	16	2.1	16	94	0	57	30	3	0	66	1.06
29667685--29667942	45	5.7	46	80	8	257	40	17	22	20	1.91
29667682--29667942	135	1.9	135	81	9	318	40	17	21	19	1.91
29677703--29677862	10	16.3	10	73	17	90	70	0	30	0	0.88
29677711--29677895	42	4.5	42	80	11	195	69	0	30	0	0.93
29677706--29677856	42	3.4	45	85	11	197	70	0	29	0	0.88
29677694--29677856	47	3.5	47	77	16	171	68	0	31	0	0.90
29678241--29678714	157	3.0	151	75	13	497	51	6	11	30	1.64
29678692--29678734	21	2.0	21	95	0	77	53	4	2	39	1.34
29678829--29678875	13	3.8	13	83	5	62	61	4	4	29	1.34
29684110--29684187	39	2.0	40	82	12	99	51	10	5	33	1.58
29684386--29684422	10	3.6	10	88	3	56	2	27	0	70	1.01
29684812--29684849	6	6.5	6	87	6	60	65	0	0	34	0.93
29684816--29684852	17	2.1	17	95	5	65	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29684854--29684942	46	2.0	45	84	10	119	43	2	5	48	1.39
29684858--29684958	46	2.2	45	79	12	107	42	1	4	50	1.35
29685864--29685902	9	4.3	9	93	6	62	79	0	0	20	0.73
29685864--29685904	17	2.3	18	91	4	66	75	0	0	24	0.80
29687794--29687825	15	2.0	17	88	11	50	71	0	0	28	0.86
29687927--29687972	16	2.8	17	87	6	69	73	0	2	23	0.94
29687928--29687972	8	5.5	8	78	5	54	73	0	2	24	0.95
29688330--29688405	40	1.9	40	86	2	109	36	1	0	61	1.04
29689091--29689135	19	2.4	18	78	7	54	31	8	0	60	1.28
29696753--29696868	35	3.3	35	91	2	180	17	8	31	43	1.79
29701372--29701432	20	3.0	20	78	7	70	62	0	0	37	0.96
29706193--29706221	12	2.4	12	100	0	58	31	0	13	55	1.39
29711966--29712052	43	2.0	43	90	0	138	25	22	2	49	1.62
29720877--29721095	37	5.9	37	85	4	264	28	15	15	40	1.87
29725784--29726001	100	2.2	101	87	1	296	37	11	20	30	1.89
29732371--29732400	5	6.0	5	100	0	60	80	0	0	20	0.72
29732387--29732556	56	3.0	56	92	0	268	45	11	12	30	1.77
29738763--29738916	84	1.8	84	82	0	200	45	11	14	29	1.79
29738781--29739055	140	2.0	139	87	2	399	45	10	11	31	1.75
29738915--29739224	83	3.7	84	82	4	340	44	11	10	33	1.75
29738915--29739312	87	4.7	87	81	6	340	43	12	10	34	1.75
29738915--29739220	167	1.8	167	84	6	420	44	11	10	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29739263--29739438	79	2.2	79	87	6	248	43	10	13	31	1.79
29739283--29739467	80	2.3	79	86	0	253	42	11	14	31	1.81
29739422--29739590	88	1.9	86	79	4	187	43	12	13	30	1.80
29741019--29741296	139	2.0	139	100	0	556	30	5	24	39	1.78
29741980--29742043	28	2.3	27	84	5	83	34	0	3	62	1.11
29742663--29742788	62	2.0	62	100	0	252	30	6	23	39	1.80
29743393--29743480	25	3.5	26	79	10	96	20	23	21	34	1.97
29745288--29745335	25	1.9	25	82	0	60	58	6	8	27	1.51
29746955--29747013	31	2.0	30	86	6	84	42	10	10	37	1.73
29746950--29747016	31	2.3	27	80	14	80	40	8	10	40	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213