genome.fa.s14.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  186  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55989100--55989202	38	2.8	38	77	5	104	40	24	8	26	1.84
55989370--55989491	41	3.0	42	90	3	194	23	28	20	27	1.99
55992642--55992702	25	2.5	25	78	10	72	31	1	8	59	1.37
55993038--55993082	14	3.5	14	77	22	62	44	8	8	37	1.67
55993020--55993094	24	3.2	24	92	1	116	48	8	5	38	1.56
56005271--56005309	20	1.9	20	89	5	60	46	20	10	23	1.81
56007458--56007534	27	2.8	26	75	14	75	36	22	27	14	1.92
56013107--56013187	37	2.2	37	93	2	137	25	17	12	44	1.84
56022624--56022672	25	2.0	25	100	0	98	24	28	4	42	1.73
56030952--56030986	18	1.9	18	88	0	52	17	0	22	60	1.37
56032262--56032320	17	3.6	17	76	19	63	52	0	1	45	1.10
56032912--56032989	40	2.0	40	82	5	95	48	10	1	39	1.45
56037826--56037925	41	2.5	40	81	1	119	29	18	20	33	1.96
56038005--56038048	16	2.6	17	82	7	63	40	2	22	34	1.67
56049039--56049093	26	2.2	25	81	9	67	18	1	16	63	1.39
56052002--56052210	92	2.3	91	86	3	276	46	3	3	45	1.39
56052302--56052343	15	2.7	16	82	14	52	45	0	2	52	1.13
56052293--56052334	15	2.9	15	82	10	52	47	0	0	52	1.00
56052278--56052516	75	3.1	75	63	16	180	46	3	3	46	1.35
56052277--56052593	157	2.0	157	96	0	580	47	4	3	44	1.40
56052446--56052480	18	2.0	17	88	5	52	45	0	0	54	0.99
56052716--56052751	16	2.2	16	100	0	72	38	36	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56053718--56053764	20	2.4	20	92	3	78	17	17	6	59	1.57
56053726--56053766	20	2.0	20	100	0	82	14	19	9	56	1.66
56055920--56055948	14	2.0	15	93	6	51	44	0	0	55	0.99
56058055--56058160	52	2.0	54	92	3	180	47	5	14	33	1.67
56059072--56059141	31	2.3	31	85	2	88	44	14	8	32	1.75
56065663--56065711	21	2.3	21	83	13	57	38	14	4	42	1.64
56074075--56074124	24	2.1	24	85	10	68	50	10	14	26	1.73
56076700--56076742	21	2.1	20	82	4	50	30	2	6	60	1.35
56082498--56082539	22	2.0	21	90	4	66	59	9	11	19	1.59
56087568--56087615	18	2.6	19	77	12	55	62	0	2	35	1.07
56094747--56094775	6	4.8	6	100	0	58	0	13	0	86	0.58
56097540--56097605	19	3.3	19	91	8	96	34	1	0	63	1.04
56100288--56100336	18	2.7	18	81	6	55	61	6	0	32	1.21
56100264--56100333	30	2.4	30	88	4	99	64	5	0	30	1.17
56100375--56100530	75	2.1	75	92	0	258	25	14	17	42	1.86
56102972--56103036	31	2.1	31	85	0	85	43	10	12	33	1.77
56105877--56106005	43	3.0	42	77	17	156	31	27	17	23	1.97
56108543--56108585	22	2.0	22	90	4	70	58	2	9	30	1.42
56110537--56111513	44	22.2	45	77	4	907	30	26	15	27	1.96
56110537--56111515	132	7.4	132	87	1	1275	30	26	15	28	1.96
56127898--56127940	22	2.0	22	90	4	70	58	2	9	30	1.42
56134273--56134328	22	2.5	22	82	5	69	37	17	12	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56138486--56138518	15	2.2	15	89	10	50	66	0	0	33	0.92
56138597--56138629	2	16.5	2	100	0	66	48	0	0	51	1.00
56143026--56143081	26	2.2	26	86	0	76	28	17	14	39	1.89
56152213--56152263	23	2.2	23	89	0	75	27	7	21	43	1.80
56153306--56153360	23	2.3	24	81	3	67	40	0	7	52	1.29
56160343--56160395	21	2.4	22	78	6	63	60	1	0	37	1.08
56160847--56160906	26	2.4	24	83	10	68	38	11	1	48	1.50
56160918--56160947	15	1.9	15	93	6	51	66	16	6	10	1.41
56160973--56161032	27	2.2	27	96	0	111	30	21	33	15	1.94
56161422--56161484	19	3.3	19	68	0	63	46	3	9	41	1.52
56162160--56162216	27	2.1	27	96	0	105	12	35	22	29	1.91
56162246--56162279	17	1.9	18	94	5	61	5	5	17	70	1.28
56162253--56162293	20	2.0	20	85	0	55	7	2	14	75	1.12
56162284--56162347	27	2.4	27	86	0	83	46	1	12	39	1.51
56164076--56164149	24	3.2	24	70	14	75	52	4	5	37	1.43
56164074--56164163	44	2.0	44	89	0	135	53	4	5	36	1.45
56164456--56164505	23	2.1	23	81	7	55	42	2	6	50	1.38
56172589--56172734	57	2.4	59	78	8	152	25	26	21	26	1.99
56173901--56174011	9	12.6	8	77	18	82	61	1	2	34	1.21
56173919--56174010	17	5.4	16	77	19	80	60	2	1	35	1.16
56173847--56174016	20	9.5	17	72	18	89	61	2	2	32	1.26
56174051--56174091	20	2.0	20	85	4	55	68	17	0	14	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56176451--56176532	20	4.1	21	81	12	93	59	2	1	36	1.18
56176452--56176532	29	2.8	29	82	16	112	59	2	1	37	1.19
56176456--56176556	48	2.1	48	85	9	134	63	3	0	31	1.19
56176456--56176545	10	9.4	9	75	8	72	62	3	1	33	1.19
56176956--56176984	11	2.6	11	100	0	58	17	6	6	68	1.34
56177072--56177113	22	1.9	22	90	9	68	33	0	4	61	1.17
56179122--56179154	17	1.9	18	88	11	52	39	0	0	60	0.97
56187069--56187113	19	2.2	20	84	7	56	71	0	2	26	0.98
56187087--56187130	22	1.9	24	86	9	65	68	2	2	27	1.14
56188835--56188870	16	2.2	17	90	5	56	25	2	5	66	1.27
56190142--56190255	55	2.1	55	93	1	194	36	16	12	34	1.86
56195868--56195892	8	3.1	8	100	0	50	52	12	0	36	1.39
56204977--56205031	24	2.3	25	81	6	69	36	0	3	60	1.15
56205692--56205748	29	2.0	28	83	10	71	24	10	12	52	1.70
56212474--56212515	20	2.1	20	86	0	57	47	0	7	45	1.30
56214510--56214546	13	2.7	14	84	16	51	67	5	2	24	1.25
56215075--56215114	6	6.7	6	91	0	62	77	0	0	22	0.77
56215550--56215626	19	3.7	21	76	13	68	41	15	5	37	1.70
56215550--56215607	22	2.6	22	81	7	64	41	17	5	36	1.72
56215586--56215658	19	3.8	19	88	0	119	36	13	9	39	1.78
56219342--56219625	144	2.0	144	95	0	505	35	17	9	38	1.81
56225892--56225932	20	2.0	21	86	9	59	34	4	17	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56227892--56228017	42	3.0	42	85	2	146	17	26	16	38	1.91
56227906--56228044	21	6.6	21	70	3	91	18	23	15	41	1.89
56227924--56228038	42	2.7	42	86	2	133	18	24	15	41	1.89
56231881--56231938	3	19.3	3	74	0	53	31	1	5	62	1.27
56237736--56237776	18	2.1	19	86	13	57	24	4	2	68	1.22
56237736--56237777	19	2.3	18	84	12	50	26	4	2	66	1.23
56237844--56237892	19	2.5	20	80	9	57	38	2	0	59	1.09
56245780--56245831	23	2.2	23	83	13	61	28	5	1	63	1.28
56252081--56252459	189	2.0	189	100	0	758	32	12	26	28	1.93
56257688--56257759	36	2.0	36	81	5	83	61	13	0	25	1.33
56259599--56259668	38	1.9	37	83	11	92	62	2	7	27	1.35
56260423--56260453	7	4.6	7	92	8	55	41	0	0	58	0.98
56267876--56267921	23	2.0	23	82	0	56	34	26	26	13	1.92
56272383--56272428	23	2.0	23	86	0	65	34	28	26	10	1.90
56275017--56275166	41	3.6	41	94	0	255	25	27	19	28	1.99
56277722--56277748	7	3.9	7	100	0	54	29	25	0	44	1.54
56278586--56278679	36	2.6	37	78	13	97	41	0	1	57	1.06
56278651--56278704	20	2.7	20	83	13	67	38	0	3	57	1.17
56296184--56296243	24	2.5	24	86	5	86	26	40	11	21	1.88
56297248--56297282	15	2.3	15	100	0	70	51	5	20	22	1.68
56303068--56303102	3	11.7	3	100	0	70	68	0	31	0	0.90
56311206--56311286	31	2.7	30	80	5	83	34	6	11	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56311233--56311295	29	2.1	29	82	8	74	31	9	12	46	1.74
56311422--56311494	30	2.4	30	79	2	74	46	12	6	34	1.68
56317114--56317180	17	3.9	17	96	0	125	23	26	5	43	1.77
56319717--56319792	19	3.9	19	75	10	82	31	21	21	26	1.98
56320115--56320151	18	2.1	18	100	0	74	27	18	16	37	1.92
56325508--56325546	18	2.2	17	86	13	53	33	0	20	46	1.51
56325773--56325893	23	5.3	23	89	4	190	18	20	25	35	1.95
56336394--56336447	27	2.0	27	82	7	65	31	22	18	27	1.97
56336401--56336460	27	2.2	27	85	5	86	31	21	15	31	1.94
56339325--56339411	4	21.8	4	73	23	51	74	0	4	20	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213