genome.fa.s14.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  133  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39042629--39043019	61	6.4	62	76	7	318	44	16	7	31	1.75
39042629--39043019	92	4.3	91	84	2	446	44	16	7	31	1.75
39056505--39056548	21	2.1	21	95	0	79	27	15	9	47	1.76
39061410--39061465	26	2.2	26	93	3	96	41	1	14	42	1.56
39074938--39074978	19	2.2	19	86	4	57	26	0	9	63	1.25
39077446--39077473	7	4.0	7	100	0	56	85	0	0	14	0.59
39079369--39079410	15	3.0	14	86	10	59	14	0	11	73	1.09
39079865--39080590	360	2.0	357	92	1	1211	28	29	8	34	1.86
39081718--39081743	13	2.0	13	100	0	52	46	0	0	53	1.00
39082927--39083079	63	2.4	63	82	0	189	24	18	26	30	1.98
39085924--39086009	37	2.3	37	79	0	100	40	12	16	30	1.86
39085842--39086073	112	2.1	112	84	0	293	39	13	14	31	1.86
39094638--39094678	16	2.5	17	77	22	52	4	17	4	73	1.19
39106254--39106294	15	2.6	16	78	14	50	0	29	0	70	0.87
39109680--39109886	27	7.6	27	91	3	315	26	14	28	30	1.95
39109680--39109886	55	3.8	55	96	0	360	26	14	28	30	1.95
39123285--39123491	27	7.6	27	90	3	297	27	14	28	29	1.95
39123285--39123491	55	3.8	55	94	0	342	27	14	28	29	1.95
39128985--39129022	19	2.0	20	84	5	51	55	13	10	21	1.67
39137204--39137265	30	2.1	30	87	6	90	32	6	8	53	1.56
39142105--39142138	17	1.9	18	88	5	52	29	5	17	47	1.71
39142665--39142724	27	2.2	27	88	11	88	38	21	23	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39152853--39152888	13	2.8	13	95	0	63	44	19	0	36	1.51
39157098--39157122	11	2.3	11	100	0	50	36	0	0	64	0.94
39166126--39166156	14	2.2	14	100	0	62	22	6	22	48	1.73
39175643--39176117	236	2.0	236	99	0	932	32	13	14	39	1.85
39177492--39177566	36	2.1	36	97	0	141	22	5	22	49	1.70
39177497--39177576	36	2.2	36	88	4	117	26	6	21	46	1.75
39183490--39183712	39	5.7	38	83	7	270	17	32	17	32	1.93
39183489--39183712	78	2.9	79	85	7	298	17	32	17	32	1.93
39183488--39183712	117	1.9	117	88	3	337	17	32	17	32	1.93
39184679--39184712	18	1.9	17	88	5	50	17	14	41	26	1.88
39188086--39188298	70	3.0	70	81	2	257	30	23	20	26	1.98
39195542--39195633	42	2.2	43	88	4	141	35	4	7	52	1.50
39201218--39201290	15	4.6	16	71	11	51	8	27	1	63	1.31
39201240--39201289	16	3.1	17	74	11	50	8	22	2	68	1.26
39201266--39201308	21	2.0	21	82	8	52	6	18	2	72	1.19
39214519--39214566	22	2.2	22	88	0	69	33	39	4	22	1.74
39214885--39214920	18	1.9	19	88	5	56	38	19	8	33	1.82
39217202--39217259	29	2.0	29	83	6	73	18	31	15	34	1.93
39217129--39217300	87	2.0	87	84	0	227	20	27	15	36	1.93
39222329--39222375	21	2.2	22	92	3	78	21	19	38	21	1.94
39225035--39225156	23	5.3	23	87	0	181	31	25	18	23	1.97
39225035--39225156	46	2.7	46	93	0	208	31	25	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39238310--39238521	40	5.3	39	79	5	228	26	27	20	25	1.99
39238310--39238521	80	2.7	80	89	0	309	26	27	20	25	1.99
39245047--39245224	27	6.6	27	84	3	205	29	28	15	26	1.96
39245068--39245223	82	1.9	81	88	3	233	29	28	15	26	1.96
39253588--39253765	27	6.6	27	83	3	205	26	15	28	29	1.96
39253589--39253744	82	1.9	81	88	3	233	26	15	28	29	1.96
39253585--39253765	82	2.2	81	83	2	229	27	15	27	29	1.96
39261883--39262060	27	6.6	27	84	3	205	29	28	15	26	1.96
39261904--39262059	82	1.9	81	88	3	233	29	28	15	26	1.96
39265993--39266062	36	1.9	36	88	0	104	24	22	14	38	1.91
39273487--39273542	26	2.2	26	84	9	71	37	3	19	39	1.69
39276248--39276276	12	2.3	13	94	5	51	20	6	6	65	1.40
39281357--39281426	34	2.1	34	88	0	104	37	18	14	30	1.90
39284684--39284712	14	2.1	14	93	6	51	13	6	0	79	0.93
39292087--39292125	13	2.9	15	78	21	50	71	0	10	17	1.12
39292862--39292916	22	2.5	22	93	0	92	25	27	20	27	1.99
39297348--39297540	40	4.7	41	77	12	155	23	22	27	26	2.00
39297401--39297491	47	1.9	47	90	0	146	24	21	27	26	1.99
39300622--39300791	36	4.7	35	76	7	153	44	13	14	27	1.83
39300624--39300781	72	2.2	72	80	4	176	44	14	13	26	1.83
39301894--39301931	19	2.0	19	94	0	67	36	2	31	28	1.71
39304826--39304892	26	2.6	25	76	9	64	25	4	2	67	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39309634--39309677	16	2.8	16	79	3	54	84	0	13	2	0.73
39309635--39309676	21	2.0	22	90	4	68	83	0	14	2	0.75
39310575--39311215	143	4.5	143	88	0	881	29	20	21	27	1.98
39312817--39312879	22	2.9	22	81	13	60	38	6	0	55	1.25
39312908--39312991	26	3.3	24	75	9	69	25	5	4	64	1.36
39314155--39314199	19	2.4	19	88	0	63	26	8	6	57	1.54
39314356--39314380	9	2.8	9	100	0	50	60	0	0	40	0.97
39324234--39324418	101	1.8	102	91	5	313	23	17	28	30	1.97
39324229--39324416	51	3.7	50	84	2	243	23	17	29	30	1.97
39327705--39327733	8	3.6	8	100	0	58	24	24	13	37	1.91
39331227--39331267	20	1.9	23	85	14	61	48	14	12	24	1.78
39333409--39333436	8	3.5	8	100	0	56	32	0	10	57	1.33
39333341--39333511	90	1.9	90	96	0	315	26	5	18	49	1.68
39343829--39343972	40	3.6	40	89	0	225	27	18	25	29	1.98
39343829--39344127	40	7.6	40	70	10	177	29	18	23	29	1.97
39343756--39344131	195	1.9	194	86	1	529	29	18	22	29	1.97
39344549--39344697	7	20.9	7	76	11	97	22	0	33	43	1.58
39345560--39345602	20	2.2	20	91	0	68	27	46	4	20	1.71
39346249--39346280	3	10.7	3	100	0	64	68	0	0	31	0.90
39352940--39352994	9	6.3	9	76	16	62	34	0	0	65	0.93
39352941--39352991	16	3.1	16	80	8	59	31	0	0	68	0.90
39352973--39353011	10	3.5	11	83	16	53	30	2	0	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39354131--39354168	19	2.0	19	94	0	67	39	5	5	50	1.48
39357237--39357509	110	2.5	110	83	1	332	35	13	23	27	1.93
39361417--39361633	114	1.9	114	98	0	416	37	11	18	32	1.86
39363787--39363831	17	2.6	17	82	6	56	40	0	0	60	0.97
39389753--39389818	33	2.0	33	82	8	80	56	0	3	40	1.15
39389779--39389812	18	1.9	17	88	5	50	55	0	0	44	0.99
39390809--39390904	48	1.9	50	81	6	115	40	8	13	37	1.75
39393342--39393376	16	2.2	16	90	10	54	74	2	0	22	0.95
39394610--39394659	20	2.5	20	78	12	59	46	6	6	42	1.53
39394723--39394772	19	2.5	20	81	12	59	40	8	14	38	1.75
39397725--39397868	49	2.9	49	82	2	135	27	19	29	22	1.98
39397740--39397904	49	3.3	49	81	5	138	28	20	29	22	1.98
39398130--39398168	20	2.0	20	89	0	60	53	2	25	17	1.56
39401633--39401676	5	8.6	5	85	5	61	40	0	18	40	1.50
39402131--39402224	25	3.8	25	71	20	83	18	22	24	35	1.96
39418296--39418352	27	2.1	27	90	0	87	29	12	21	36	1.90
39422839--39422939	51	2.0	51	90	0	157	36	20	8	33	1.84
39438753--39438808	19	2.9	19	70	15	53	39	17	5	37	1.73
39439671--39439740	23	2.9	24	79	14	74	32	20	25	21	1.97
39439671--39439765	26	3.9	23	77	13	75	32	18	24	24	1.97
39443619--39443652	18	2.0	18	88	11	54	61	0	5	32	1.20
39446031--39446099	26	2.7	26	81	4	77	26	24	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39450024--39450056	15	2.2	15	94	0	57	42	9	18	30	1.81
39450226--39450270	22	2.0	22	83	8	56	40	4	0	55	1.20
39456674--39456984	27	11.7	26	76	11	290	39	18	22	19	1.92
39456682--39456983	53	5.6	54	78	9	253	39	17	22	19	1.92
39456674--39456985	80	3.9	77	76	11	297	39	18	22	19	1.92
39463661--39463835	27	6.6	27	80	7	171	41	16	22	19	1.90
39463661--39463837	80	2.2	79	81	4	205	40	17	22	19	1.91
39463661--39463833	53	3.3	54	84	4	203	41	15	23	19	1.89
39464204--39464287	28	3.0	28	83	0	96	21	23	22	32	1.98
39466633--39466788	73	2.2	71	88	2	222	29	21	25	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213