genome.fa.s14.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  174  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52381145--52381198	23	2.2	24	80	12	65	35	1	5	57	1.33
52393687--52393724	20	1.9	20	88	0	58	26	18	26	28	1.98
52393698--52393736	20	2.0	20	85	10	53	23	23	25	28	1.99
52394943--52394985	21	2.2	19	83	8	50	72	4	9	13	1.26
52396506--52396552	24	2.0	24	83	8	60	27	2	21	48	1.61
52397064--52397122	29	2.0	29	90	0	91	25	23	15	35	1.94
52417396--52417516	63	1.9	63	96	0	224	29	27	19	23	1.98
52420537--52420568	16	2.0	16	93	0	55	25	15	0	59	1.36
52420790--52420933	51	2.8	52	78	8	168	31	27	18	22	1.97
52421191--52421221	16	1.9	16	93	0	53	45	9	9	35	1.70
52424773--52424802	15	1.9	16	93	6	53	33	0	23	43	1.54
52425528--52425568	16	2.6	16	92	0	64	46	4	4	43	1.46
52427044--52427107	25	2.6	26	82	9	89	53	20	7	18	1.69
52428906--52428935	9	3.3	9	100	0	60	23	10	10	56	1.62
52429125--52429238	45	2.5	45	81	2	122	42	18	20	18	1.89
52429400--52429525	56	2.2	57	90	4	193	44	12	22	20	1.85
52439306--52439336	16	1.9	16	93	0	53	32	0	25	41	1.56
52452778--52452828	22	2.3	23	86	6	70	37	5	1	54	1.36
52453333--52453648	124	2.5	124	91	2	510	31	17	22	28	1.97
52456696--52456798	53	1.9	53	94	0	179	40	3	6	48	1.48
52456962--52457016	27	2.0	28	89	3	85	23	0	34	41	1.55
52456957--52457010	15	3.8	15	69	14	51	25	0	33	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52456985--52457349	21	17.5	21	84	8	453	24	0	30	44	1.56
52456985--52457349	43	8.8	42	85	6	453	24	0	30	44	1.56
52457248--52457333	17	4.6	17	70	25	57	24	0	29	46	1.53
52457231--52457364	59	2.5	50	73	19	124	23	0	30	46	1.53
52457296--52457342	17	2.9	16	84	9	53	21	0	31	46	1.51
52457337--52457362	13	2.0	13	100	0	52	15	0	46	38	1.46
52457381--52457419	7	5.9	7	85	11	55	51	0	0	48	1.00
52457380--52457429	7	7.3	7	78	13	50	46	0	0	54	1.00
52457624--52457664	21	2.0	21	85	0	55	7	17	41	34	1.77
52457922--52457964	18	2.4	18	88	0	59	44	9	27	18	1.80
52458612--52458637	7	3.7	7	100	0	52	57	15	0	26	1.38
52461069--52461184	61	1.9	58	87	5	169	50	3	3	43	1.36
52461164--52461222	30	2.0	30	83	6	75	47	5	3	44	1.42
52462512--52462541	15	2.0	15	93	0	51	50	0	0	50	1.00
52462508--52462560	26	2.0	26	85	7	72	49	1	0	49	1.12
52462511--52462568	26	2.2	26	81	6	64	51	1	1	44	1.21
52468831--52468873	18	2.3	18	84	11	52	18	0	30	51	1.47
52470120--52470177	25	2.6	20	72	25	53	36	41	6	15	1.74
52470121--52470172	25	2.1	25	100	0	104	34	40	7	17	1.78
52472144--52472203	24	2.6	22	76	19	61	60	10	0	30	1.30
52473108--52473242	68	2.0	68	85	1	180	48	4	4	42	1.43
52473220--52473252	17	2.0	17	88	5	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52478123--52478286	50	3.0	53	76	16	165	23	28	18	29	1.98
52483350--52483418	23	3.1	23	85	8	81	46	20	21	11	1.82
52487209--52487247	15	2.4	17	79	20	55	38	17	0	43	1.50
52487213--52487247	15	2.2	16	95	5	63	37	17	0	45	1.48
52488673--52488716	22	1.9	24	86	9	65	40	9	2	47	1.48
52492896--52492936	15	2.7	15	84	3	55	41	0	0	58	0.98
52492896--52492936	16	2.6	16	88	3	66	41	0	0	58	0.98
52492896--52492943	16	3.0	16	85	14	64	39	0	0	60	0.97
52493393--52493451	16	3.6	16	80	13	66	40	0	3	55	1.16
52497595--52497627	5	6.8	5	89	3	50	39	0	24	36	1.56
52505004--52505198	98	2.0	98	95	0	354	36	24	10	28	1.88
52505477--52505501	9	2.8	9	100	0	50	68	8	0	24	1.16
52506129--52506163	3	11.7	3	93	0	61	65	0	2	31	1.07
52506111--52506162	18	2.9	18	88	0	68	61	5	1	30	1.30
52508850--52508894	23	2.0	23	91	4	74	48	15	4	31	1.65
52508883--52508936	19	2.8	19	91	0	90	38	16	5	38	1.72
52509585--52509652	17	4.3	16	73	21	63	63	1	1	33	1.13
52509560--52509650	29	3.1	28	77	6	92	58	1	2	38	1.18
52522218--52522381	49	3.4	49	68	9	147	26	13	15	43	1.84
52522226--52522419	96	2.0	97	93	1	336	24	14	15	45	1.84
52522919--52522980	19	3.3	19	68	4	63	38	12	1	46	1.52
52522907--52522981	37	2.0	37	97	0	141	40	12	2	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52523085--52523148	31	2.2	30	86	8	87	42	1	12	43	1.52
52523098--52523164	31	2.2	31	88	0	98	35	4	11	47	1.61
52523229--52523456	76	3.0	76	95	1	408	35	7	14	41	1.75
52523829--52523916	44	2.0	44	86	4	124	42	11	14	31	1.82
52525808--52525944	27	5.1	27	74	7	91	37	18	24	18	1.93
52529756--52529785	12	2.6	12	94	5	53	53	10	0	36	1.35
52531807--52531851	23	1.9	24	81	4	56	33	8	0	57	1.30
52540908--52541009	41	2.6	40	83	6	127	33	3	10	51	1.55
52543012--52543128	57	2.1	56	83	3	144	44	7	20	27	1.78
52544407--52544481	35	2.1	37	87	7	109	41	6	8	44	1.60
52544658--52544696	21	1.9	20	89	5	60	43	46	0	10	1.37
52547013--52547055	21	2.0	21	90	4	68	41	0	4	53	1.21
52547183--52547226	15	3.0	16	81	15	51	50	0	0	50	1.00
52572955--52574456	754	2.0	754	99	0	2995	32	13	15	38	1.87
52582355--52582465	19	5.8	19	90	0	168	40	9	12	37	1.75
52582362--52582465	38	2.7	38	96	0	190	41	8	11	38	1.72
52585323--52585368	24	1.9	24	82	8	58	41	15	28	15	1.87
52589323--52590216	132	6.8	132	93	0	1411	29	18	23	29	1.97
52590541--52590651	19	5.8	19	88	0	168	39	8	13	38	1.74
52590548--52590651	38	2.7	38	96	0	190	40	7	12	39	1.72
52594505--52595399	132	6.8	132	93	0	1411	29	18	23	29	1.97
52595725--52595835	19	5.8	19	88	0	168	39	8	13	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52595732--52595835	38	2.7	38	96	0	190	40	7	12	39	1.72
52599687--52600579	132	6.8	132	93	1	1393	29	18	23	29	1.97
52600903--52601013	19	5.8	19	88	0	168	39	8	13	38	1.74
52600910--52601013	38	2.7	38	96	0	190	40	7	12	39	1.72
52612030--52612236	103	2.0	102	96	0	378	53	11	4	30	1.56
52618582--52618649	32	2.1	33	94	2	120	38	17	2	41	1.65
52627638--52627676	20	1.9	21	85	15	55	15	10	2	71	1.23
52640128--52640173	16	2.9	16	78	12	51	45	0	2	52	1.13
52640034--52640291	120	2.1	120	99	0	507	42	2	5	49	1.39
52640248--52640289	15	2.7	16	82	14	52	45	0	2	52	1.13
52640239--52640280	15	2.9	15	82	10	52	47	0	0	52	1.00
52640417--52640521	44	2.5	40	76	15	113	31	29	4	34	1.78
52640415--52640524	45	2.6	44	81	8	131	31	29	5	33	1.80
52640503--52640572	16	4.4	16	96	0	104	32	35	0	31	1.58
52640884--52640955	31	2.4	30	86	4	99	34	11	12	41	1.78
52640994--52641049	29	1.9	29	85	7	78	44	0	7	48	1.30
52646113--52646176	33	1.9	33	84	6	85	18	20	15	45	1.86
52650422--52650461	19	2.1	19	95	0	71	37	17	17	27	1.92
52652484--52652518	13	2.7	13	100	0	70	37	22	17	22	1.94
52656824--52656938	31	3.6	31	80	6	106	22	18	13	45	1.85
52661952--52661981	14	2.1	15	93	6	53	20	23	20	36	1.95
52672820--52672859	18	2.2	18	86	4	53	57	0	35	7	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52679027--52679082	24	2.5	22	76	5	58	44	7	0	48	1.30
52680839--52680878	21	1.9	21	85	10	55	32	0	0	67	0.91
52681448--52681498	21	2.5	21	78	15	61	39	1	17	41	1.61
52684191--52684223	3	11.3	3	93	6	59	30	0	0	69	0.88
52693842--52694593	138	5.5	138	91	2	1162	40	8	6	44	1.61
52695482--52695540	11	5.4	11	74	8	57	35	44	3	16	1.65
52695482--52695540	22	2.7	22	83	0	73	35	44	3	16	1.65
52701682--52701725	23	1.9	22	82	17	54	36	25	0	38	1.56
52701770--52701856	45	1.9	45	88	4	131	34	22	17	25	1.96
52701868--52702005	51	2.7	51	78	6	163	31	27	16	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213