genome.fa.s14.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  189  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56976211--56976259	26	1.9	25	83	4	62	28	6	18	46	1.72
56978364--56978416	19	2.8	19	79	0	70	13	24	32	30	1.93
56980986--56981141	43	3.6	42	82	7	181	23	16	28	31	1.96
56985084--56985110	4	6.8	4	100	0	54	0	22	0	77	0.76
56985805--56985841	2	18.5	2	100	0	74	0	0	48	51	1.00
56994917--56994951	6	5.7	6	89	3	52	0	62	0	37	0.95
56997001--56997054	19	2.8	19	80	5	56	38	0	3	57	1.17
56997002--56997053	27	1.9	27	84	7	70	38	0	3	57	1.17
56997169--56997221	21	2.5	21	84	0	70	33	35	5	24	1.79
56999419--56999474	23	2.5	23	75	13	62	53	0	0	46	1.00
56999444--56999481	17	2.2	17	86	9	51	57	0	0	42	0.98
57000772--57000802	10	3.1	10	90	0	53	64	0	25	9	1.24
57000846--57001044	51	4.0	49	74	7	193	27	17	26	28	1.98
57005842--57006082	19	11.5	20	72	16	116	31	1	12	53	1.47
57005941--57006129	40	4.3	41	70	22	111	30	1	13	54	1.46
57005878--57006172	96	3.3	84	81	13	235	32	1	12	53	1.46
57005987--57006172	27	7.8	24	75	20	178	31	1	12	54	1.45
57005977--57006219	49	5.1	49	85	7	304	31	0	13	53	1.46
57005981--57006219	96	2.5	97	91	4	378	30	0	14	53	1.46
57006212--57006334	60	2.0	60	85	3	167	30	0	14	54	1.46
57006368--57006449	38	2.2	38	97	0	155	54	3	2	39	1.31
57006486--57006527	16	2.7	15	89	7	66	40	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57008152--57008213	6	10.3	6	91	0	61	35	32	27	4	1.78
57011536--57011580	22	2.1	21	91	4	72	0	33	2	64	1.06
57011646--57011716	27	2.6	28	86	6	101	26	36	19	16	1.94
57018061--57018100	16	2.5	16	95	0	71	37	5	35	22	1.76
57018342--57018376	18	2.0	17	88	5	52	54	0	0	45	0.99
57018460--57018496	16	2.2	17	86	13	51	54	0	2	43	1.14
57018580--57018616	16	2.2	17	86	13	51	54	0	2	43	1.14
57018701--57018737	16	2.2	17	86	13	51	54	0	2	43	1.14
57018328--57018738	120	3.4	120	98	1	779	48	4	2	44	1.38
57018676--57018837	54	3.1	53	71	15	149	49	1	2	46	1.26
57018677--57018960	91	3.0	97	84	10	276	47	3	2	46	1.33
57018779--57018930	44	3.4	43	72	18	139	49	3	1	45	1.29
57018754--57018960	91	2.3	91	93	0	351	46	3	2	46	1.36
57027815--57027881	19	3.2	23	61	30	58	37	8	10	43	1.71
57029621--57029690	27	2.6	27	80	8	79	25	2	21	50	1.63
57031070--57031111	14	3.0	14	82	0	57	42	16	9	30	1.80
57031035--57031101	34	1.9	35	87	3	100	44	13	10	31	1.77
57035399--57035507	57	1.9	57	90	3	175	29	17	27	25	1.97
57035637--57035765	67	1.9	67	96	0	240	20	17	32	28	1.96
57040953--57040989	19	2.0	19	89	5	58	43	24	5	27	1.76
57044962--57045016	12	4.8	12	80	8	62	29	18	0	52	1.45
57044961--57045024	33	1.9	33	90	0	101	29	15	0	54	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57045008--57045060	21	2.6	20	74	11	54	26	15	0	58	1.37
57045121--57045180	5	10.8	5	77	19	57	26	20	1	51	1.56
57045109--57045185	23	3.1	24	74	16	77	27	18	1	53	1.52
57045109--57045180	28	2.6	28	84	8	85	26	19	1	52	1.54
57045132--57045180	11	4.5	11	85	7	64	26	18	2	53	1.56
57045198--57045236	17	2.3	17	86	8	53	30	12	0	56	1.37
57045215--57045263	25	2.0	25	83	0	62	40	10	2	46	1.49
57045391--57045579	5	33.6	5	67	25	53	24	14	2	59	1.46
57045390--57045450	12	5.2	12	72	21	58	22	19	0	57	1.41
57045392--57045474	22	3.7	21	78	15	69	26	18	0	55	1.43
57045394--57045450	17	3.3	17	85	7	71	24	21	0	54	1.45
57045503--57045579	28	2.7	28	74	22	79	25	12	2	58	1.48
57045503--57045577	12	6.6	12	69	24	56	26	13	2	57	1.50
57045521--57045586	23	3.0	21	73	20	62	28	12	3	56	1.51
57045582--57045639	23	2.5	23	91	2	89	17	15	0	67	1.24
57047023--57047051	5	6.0	5	92	8	51	62	37	0	0	0.96
57048269--57048306	11	3.5	11	92	0	58	31	10	0	57	1.32
57055560--57055911	44	7.8	44	79	7	262	33	17	19	30	1.94
57055558--57056299	140	5.6	133	74	14	374	32	16	20	30	1.94
57055558--57055911	88	3.9	87	79	6	316	33	17	19	30	1.94
57055960--57056299	44	7.4	47	81	8	316	32	14	22	31	1.93
57056666--57056714	22	2.2	22	92	0	80	8	55	18	18	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57057858--57057883	3	8.7	3	100	0	52	30	0	0	69	0.89
57060460--57060532	37	2.0	37	97	0	137	13	20	28	36	1.91
57061031--57061056	12	2.2	12	100	0	52	76	15	7	0	0.99
57070853--57070892	21	1.9	21	84	0	53	12	25	25	37	1.91
57078990--57079052	26	2.4	27	92	7	103	41	4	0	53	1.22
57079690--57079748	19	3.2	19	82	4	84	37	13	0	49	1.43
57080828--57080860	16	2.2	16	89	10	52	6	6	0	87	0.65
57085850--57085899	6	8.3	6	100	0	100	50	16	0	34	1.45
57090850--57090910	28	2.1	29	81	3	70	60	1	3	34	1.23
57090837--57090896	19	3.2	19	77	11	54	60	0	3	36	1.14
57090858--57090919	29	2.2	27	81	13	72	59	1	0	38	1.07
57092284--57092328	19	2.4	19	85	7	56	48	0	31	20	1.49
57092312--57092344	15	2.1	16	88	5	50	48	0	27	24	1.51
57092427--57092486	30	2.0	31	86	3	86	40	0	40	20	1.52
57093234--57093310	26	3.0	26	86	7	77	24	25	9	40	1.85
57093254--57093310	26	2.2	26	96	0	105	24	29	5	40	1.77
57101166--57101205	21	1.9	21	84	0	53	57	0	7	35	1.27
57101174--57101219	21	2.2	21	84	7	58	56	0	4	39	1.19
57101981--57102015	17	2.0	18	88	5	54	65	5	5	22	1.36
57102438--57102479	22	1.9	22	100	0	84	45	7	4	42	1.52
57102513--57102634	40	3.0	40	90	2	192	51	8	4	35	1.53
57102520--57102639	13	9.1	13	77	7	98	54	8	5	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57102520--57102639	27	4.5	26	81	6	134	54	8	5	32	1.52
57104704--57104770	31	2.1	33	86	8	93	22	25	13	38	1.90
57107944--57108072	39	3.3	39	96	0	231	31	17	13	37	1.89
57108085--57108140	16	3.5	16	75	18	62	19	28	3	48	1.66
57108082--57108156	32	2.3	32	97	0	141	22	26	2	48	1.64
57108101--57108157	16	3.6	16	73	17	64	22	26	1	49	1.60
57115696--57115721	5	5.2	5	100	0	52	80	0	0	19	0.71
57121734--57121805	30	2.4	30	79	4	83	59	4	9	26	1.47
57121843--57121886	3	14.7	3	100	0	88	65	0	0	34	0.93
57121944--57122020	19	3.8	19	83	11	100	36	6	16	40	1.75
57121986--57122030	23	2.0	23	86	4	65	33	4	15	46	1.66
57122197--57122231	15	2.2	16	90	5	54	11	8	5	74	1.22
57122594--57122634	16	2.8	14	85	10	55	36	9	2	51	1.48
57122621--57122672	20	2.6	20	84	0	77	36	9	0	53	1.34
57122564--57122774	102	2.1	100	90	1	323	34	8	3	53	1.49
57127028--57127066	6	7.0	6	88	11	57	84	0	15	0	0.62
57127025--57127066	16	2.6	16	92	3	66	85	0	14	0	0.59
57128291--57129195	132	6.8	132	92	0	1418	29	15	24	30	1.95
57129575--57129630	21	2.8	19	84	10	85	37	7	16	39	1.76
57129822--57129862	15	2.6	16	84	7	57	14	9	4	70	1.30
57130244--57130288	18	2.6	17	83	10	56	33	11	2	53	1.49
57130244--57130311	20	3.7	18	79	12	68	36	8	1	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57130246--57130413	52	3.2	51	71	18	146	34	9	3	52	1.51
57130213--57130414	106	1.9	106	89	2	318	33	8	3	53	1.51
57130244--57130414	54	3.2	54	70	14	131	34	9	3	52	1.51
57142715--57142882	47	3.6	46	79	6	169	43	19	14	22	1.87
57143463--57143588	43	3.0	42	82	4	146	29	27	14	28	1.95
57145512--57145938	112	3.8	110	95	2	764	41	15	2	40	1.62
57145689--57145721	12	2.8	12	90	4	50	51	9	3	36	1.49
57146428--57146456	14	2.0	15	93	6	51	51	20	0	27	1.47
57159037--57159079	9	4.4	9	78	16	50	72	0	25	2	0.97
57159039--57159076	3	12.7	3	88	0	58	68	0	28	2	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213