genome.fa.s14.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  140  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41872812--41872856	18	2.5	18	92	0	72	28	22	11	37	1.88
41879717--41879793	32	2.4	32	82	8	86	27	42	0	29	1.56
41880301--41880627	117	2.8	116	90	2	512	45	24	8	21	1.79
41885869--41886014	40	3.7	40	84	7	181	23	22	27	26	2.00
41885869--41886047	80	2.2	80	81	6	195	25	21	26	25	2.00
41893777--41893961	40	4.7	40	86	6	234	24	22	26	26	2.00
41893777--41893961	79	2.3	81	83	6	236	24	22	26	26	2.00
41893830--41893993	79	2.1	78	84	6	206	26	20	25	26	1.99
41896121--41896309	41	4.6	41	82	7	204	27	17	24	29	1.98
41896121--41896301	82	2.2	82	86	4	240	28	17	25	28	1.98
41896283--41896397	43	2.7	43	80	11	139	23	15	25	35	1.94
41896115--41896391	126	2.2	122	74	8	263	26	16	24	31	1.96
41901819--41901845	11	2.5	11	100	0	54	70	14	0	14	1.17
41904034--41904068	16	2.2	16	100	0	70	22	11	11	54	1.68
41910227--41910260	16	2.1	16	88	0	50	38	0	5	55	1.24
41911289--41911345	3	18.7	3	96	3	105	68	0	0	31	0.90
41918314--41918405	46	2.0	46	100	0	184	50	10	13	26	1.74
41920272--41920371	38	2.6	38	77	6	103	24	30	18	28	1.97
41920429--41920545	41	2.9	40	79	13	132	29	0	19	50	1.54
41920454--41920545	19	4.6	20	74	15	73	28	1	21	48	1.57
41920607--41920680	29	2.6	29	85	8	105	43	6	20	29	1.77
41923023--41923071	14	3.4	15	78	13	50	48	2	2	46	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41923992--41924101	37	2.8	40	79	12	129	24	17	25	32	1.96
41923993--41924131	40	3.5	39	72	12	106	26	15	25	31	1.96
41930515--41930619	4	25.0	4	75	21	83	69	1	23	4	1.18
41930516--41930597	34	2.4	34	100	0	164	69	2	23	4	1.20
41930514--41930619	34	3.4	32	85	14	134	69	1	23	4	1.17
41933842--41933878	12	3.0	12	88	4	56	70	0	0	29	0.88
41938654--41938711	25	2.3	25	83	13	75	56	0	1	41	1.09
41947508--41947537	15	1.9	16	93	6	53	56	0	0	43	0.99
41947804--41947844	17	2.3	18	87	4	57	70	0	0	29	0.87
41947996--41948053	18	3.2	18	76	9	64	34	0	1	63	1.04
41948025--41948077	24	2.3	23	86	3	70	33	1	0	64	1.05
41949205--41949229	6	4.2	6	100	0	50	68	0	0	32	0.90
41949256--41949291	16	2.2	16	95	0	63	52	5	2	38	1.39
41949782--41949837	28	2.0	28	100	0	112	57	7	0	35	1.26
41949857--41949933	27	2.9	27	82	5	95	25	23	31	19	1.98
41950007--41950076	19	3.7	19	82	3	97	37	10	0	52	1.35
41950012--41950082	37	1.9	37	100	0	142	39	11	0	49	1.39
41950390--41950432	19	2.2	19	84	12	52	48	0	11	39	1.40
41950642--41950712	37	1.9	37	94	0	124	49	1	9	39	1.45
41950642--41950716	18	4.1	18	72	6	62	52	1	9	37	1.42
41950648--41950716	19	3.7	19	75	5	79	52	1	8	37	1.42
41950685--41950725	19	2.1	19	86	4	55	53	0	9	36	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41950792--41950877	27	3.2	26	85	4	102	19	26	23	30	1.98
41950918--41951016	28	3.5	28	94	5	173	48	0	13	38	1.42
41950908--41951044	57	2.4	57	74	4	143	41	0	10	47	1.39
41959255--41959308	26	2.0	26	89	10	81	38	0	0	61	0.96
41959252--41959308	24	2.3	25	84	6	71	40	0	0	59	0.97
41960032--41960080	24	2.0	24	88	4	71	57	4	0	38	1.18
41960115--41960181	35	1.9	35	87	6	100	44	0	4	50	1.22
41963174--41963447	132	2.1	132	81	0	323	21	17	25	35	1.95
41965754--41965834	27	3.0	27	78	3	92	25	25	23	24	2.00
41966218--41967057	144	5.9	142	77	5	553	26	16	22	34	1.95
41966292--41966903	216	2.8	213	81	3	638	27	16	21	34	1.95
41966173--41967059	72	12.4	71	75	4	465	26	16	22	35	1.95
41967370--41967397	13	2.2	13	100	0	56	14	7	14	64	1.48
41974488--41974516	5	5.8	5	100	0	58	41	0	0	58	0.98
41975060--41975106	22	2.1	22	100	0	94	27	0	12	59	1.34
41975935--41975972	10	4.1	9	83	16	51	52	0	5	42	1.24
41975937--41975972	14	2.6	14	83	16	56	50	0	5	44	1.25
41979822--41979853	12	2.6	13	85	14	50	37	0	6	56	1.25
41982514--41982560	20	2.3	20	100	0	94	42	4	4	48	1.42
41986402--41986439	5	7.4	5	90	3	58	76	2	0	21	0.91
41987932--41988072	42	3.4	42	89	1	212	24	26	10	39	1.88
41995130--41995268	42	3.3	41	87	6	183	25	23	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42007582--42007606	10	2.5	10	100	0	50	88	0	12	0	0.53
42022956--42023007	26	2.0	26	100	0	104	50	15	0	34	1.45
42025480--42025603	34	3.6	34	78	4	124	44	16	7	32	1.75
42029868--42029914	23	2.1	23	88	4	69	63	12	2	21	1.39
42029882--42029940	29	2.1	28	83	3	73	62	10	0	27	1.27
42036246--42036333	39	2.3	39	84	7	108	53	4	3	38	1.38
42040911--42040950	21	1.9	21	89	0	62	50	2	0	47	1.14
42040964--42041012	21	2.4	20	82	3	62	40	0	0	59	0.98
42040924--42041027	50	2.1	50	83	5	129	37	1	0	59	1.15
42042013--42042209	98	2.0	98	93	0	340	37	24	10	28	1.88
42042880--42042928	24	2.0	26	88	8	75	59	4	6	30	1.41
42043338--42043363	13	2.0	13	100	0	52	84	0	0	15	0.62
42043697--42043845	19	7.8	19	91	5	239	36	14	10	38	1.80
42043690--42043844	59	2.7	59	91	5	241	37	14	9	38	1.79
42044074--42044615	44	12.6	43	73	10	328	28	23	21	26	1.99
42044021--42044531	89	5.9	88	71	15	307	27	24	21	27	1.99
42044589--42044795	44	4.7	44	66	13	111	24	27	20	28	1.99
42044011--42044612	217	2.8	217	94	0	1033	27	23	20	27	1.99
42044604--42045256	132	4.9	132	93	0	1085	24	24	20	30	1.99
42044696--42045256	44	12.8	44	63	15	162	24	24	20	30	1.98
42046522--42046546	10	2.5	10	100	0	50	0	0	8	92	0.40
42046972--42047324	180	2.0	180	96	0	652	32	27	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42051220--42051416	98	2.0	98	93	0	340	36	24	10	28	1.88
42052078--42052133	26	2.3	25	87	9	80	60	3	5	30	1.36
42052543--42052568	13	2.0	13	100	0	52	84	0	0	15	0.62
42052899--42053009	19	5.8	19	91	0	177	36	14	9	38	1.79
42052876--42053009	38	3.4	38	88	4	169	38	14	8	38	1.77
42053496--42053663	80	2.1	82	83	4	207	50	9	4	36	1.54
42072436--42072480	20	2.2	20	84	4	54	46	11	15	26	1.79
42073930--42073978	24	2.0	25	88	4	73	34	0	2	63	1.06
42075744--42075787	18	2.4	18	88	0	61	18	27	9	45	1.79
42077145--42077425	97	2.9	96	84	3	361	41	18	2	37	1.64
42079647--42079685	20	2.0	19	85	5	51	56	2	15	25	1.52
42080690--42080745	23	2.4	24	81	3	69	35	8	1	53	1.43
42104632--42104667	17	2.1	17	90	10	56	27	5	2	63	1.30
42116915--42117352	50	8.9	50	72	4	325	32	24	19	22	1.97
42116915--42117347	98	4.4	98	91	0	659	33	24	20	22	1.97
42118895--42118939	17	2.8	17	83	12	51	24	4	4	66	1.29
42124667--42124780	27	4.2	26	75	6	84	40	14	16	28	1.88
42124767--42124791	11	2.3	11	100	0	50	56	16	12	16	1.68
42128653--42128693	18	2.2	19	86	4	57	53	2	0	43	1.13
42128668--42128712	15	2.9	16	87	6	67	46	4	0	48	1.22
42142019--42142065	25	1.9	24	83	12	60	42	2	2	53	1.25
42143543--42143613	22	3.1	22	80	15	83	25	29	1	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42143543--42143613	11	6.3	11	78	16	67	25	29	1	43	1.63
42143573--42143672	51	2.0	51	84	4	130	25	27	3	45	1.68
42145462--42145501	18	2.2	18	86	0	53	17	30	7	45	1.76
42145758--42145805	21	2.3	21	82	7	62	31	37	29	2	1.69
42146036--42146396	43	8.0	42	77	13	256	42	32	1	23	1.63
42146063--42146211	27	5.9	27	75	15	156	42	36	1	20	1.60
42146036--42146396	21	16.0	21	72	13	272	42	32	1	23	1.63
42146037--42146396	49	7.9	48	81	8	305	42	32	1	23	1.63
42146089--42146396	64	4.7	60	74	15	211	42	32	1	24	1.64
42146994--42147582	126	4.7	126	91	1	948	29	23	17	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213