genome.fa.s15.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  100  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31241991--31242036	24	1.9	24	82	8	58	54	13	10	21	1.69
31243182--31243313	50	2.6	51	82	8	151	33	15	12	38	1.85
31245003--31245074	36	2.0	36	97	0	135	34	5	16	43	1.72
31245770--31245822	27	2.0	27	96	0	97	41	15	22	20	1.89
31252137--31252181	13	3.5	13	75	6	56	22	20	11	46	1.81
31252134--31252192	25	2.4	25	94	0	100	20	16	15	47	1.83
31255736--31255774	16	2.5	16	83	4	53	58	15	2	23	1.49
31255752--31255796	20	2.2	20	84	7	56	51	11	6	31	1.63
31257562--31257612	26	2.0	26	96	0	93	29	35	23	11	1.90
31257468--31257690	103	2.2	104	92	2	369	31	31	18	17	1.95
31258017--31258080	30	2.2	29	81	10	76	29	28	6	35	1.82
31258024--31258080	30	1.9	30	85	3	80	29	24	7	38	1.82
31260307--31260341	18	1.9	18	88	11	54	22	20	0	57	1.41
31260329--31260449	18	6.6	18	77	7	118	6	20	2	70	1.22
31260329--31260451	6	20.0	6	72	3	93	6	20	2	70	1.21
31262049--31262205	78	2.0	78	100	0	314	19	25	21	33	1.97
31262837--31262872	11	3.3	11	88	0	54	13	5	8	72	1.27
31262944--31262974	12	2.6	12	94	0	53	12	9	6	70	1.31
31264034--31264096	21	3.0	21	88	2	90	30	3	33	33	1.74
31265176--31265217	10	4.3	10	78	6	50	28	11	23	35	1.91
31267954--31267988	18	1.9	18	88	11	54	22	20	0	57	1.41
31267976--31268106	6	21.0	6	67	10	66	7	19	1	70	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31268027--31268119	18	5.5	17	78	14	88	7	17	0	75	1.03
31268026--31268075	26	1.9	26	88	8	75	12	14	0	74	1.09
31272730--31272804	12	6.2	12	70	11	64	69	2	16	12	1.30
31272774--31272890	45	2.6	45	78	5	119	63	0	23	12	1.34
31272791--31272847	27	2.2	26	81	6	62	61	0	26	12	1.31
31276481--31276525	20	2.2	20	84	7	56	51	11	6	31	1.63
31276749--31276809	30	2.0	30	84	6	79	26	14	24	34	1.94
31286555--31286600	21	2.3	21	88	7	69	73	2	4	19	1.10
31286555--31286601	20	2.3	21	85	3	69	74	2	4	19	1.09
31287755--31287826	33	2.2	33	87	5	101	54	6	27	11	1.61
31296844--31296893	20	2.4	21	80	3	66	54	2	32	12	1.49
31305701--31305750	26	1.9	26	91	0	82	24	24	26	26	2.00
31306320--31306379	14	4.2	14	72	15	52	58	6	8	26	1.52
31309328--31309366	20	2.0	20	85	10	53	25	28	17	28	1.98
31309736--31309777	16	2.6	16	88	0	57	30	11	28	28	1.92
31311863--31311910	12	4.1	13	84	15	61	62	12	10	14	1.54
31313019--31313075	21	2.7	21	76	7	53	10	26	1	61	1.38
31315266--31315291	13	2.0	13	100	0	52	23	7	0	69	1.14
31316727--31316774	12	4.1	13	84	15	61	62	12	10	14	1.54
31318200--31318257	6	9.7	6	77	7	64	75	3	15	5	1.11
31318206--31318264	18	3.4	17	83	6	73	74	5	13	6	1.19
31320044--31320100	19	3.0	19	76	5	53	56	0	17	26	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31325891--31326095	27	7.6	27	85	3	205	29	29	15	26	1.96
31325891--31326094	54	3.8	54	84	3	257	29	29	15	25	1.96
31325945--31326094	81	1.9	81	88	0	228	27	28	16	27	1.97
31334734--31334789	10	5.6	10	78	16	62	26	30	17	25	1.97
31334733--31334797	20	3.3	20	95	2	114	24	29	20	26	1.99
31339281--31339327	20	2.3	21	89	7	71	34	10	31	23	1.89
31341422--31341468	18	2.6	18	80	12	60	19	19	0	61	1.34
31342427--31342459	14	2.4	14	89	0	57	12	3	6	78	1.04
31343930--31343967	19	2.0	20	94	5	69	36	10	34	18	1.85
31352470--31352496	14	1.9	14	100	0	54	33	22	14	29	1.94
31356092--31356166	33	2.2	34	85	4	107	42	12	6	38	1.68
31366355--31366466	27	4.0	28	81	9	111	32	25	13	28	1.94
31374093--31374162	27	2.6	27	95	2	113	31	28	12	27	1.93
31374093--31374190	28	3.5	28	90	2	135	31	28	13	26	1.94
31375613--31375658	21	2.2	21	88	0	65	58	6	4	30	1.43
31387621--31387660	21	1.9	21	89	0	62	50	15	12	22	1.77
31390295--31390375	12	6.8	12	69	17	53	12	24	1	61	1.38
31390310--31390365	18	3.0	20	68	26	59	10	26	0	62	1.28
31395475--31395537	21	3.0	21	88	2	81	33	31	4	30	1.78
31398047--31398294	40	6.2	40	89	2	320	22	19	28	29	1.98
31403444--31403485	10	4.3	10	78	6	50	28	11	23	35	1.91
31409475--31409516	18	2.3	18	80	8	50	40	4	9	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31412760--31412788	6	4.8	6	100	0	58	17	48	0	34	1.47
31415676--31415713	19	2.0	20	89	5	60	18	31	13	36	1.89
31419668--31419714	25	1.9	24	83	12	60	68	2	23	6	1.24
31419644--31419715	13	5.8	12	72	18	58	73	1	19	5	1.10
31427158--31427197	18	2.2	18	86	4	53	12	27	0	60	1.33
31428249--31428283	18	2.0	17	94	5	61	17	8	0	74	1.06
31428266--31428330	13	4.8	13	80	10	76	21	4	3	70	1.19
31428249--31428329	15	5.4	15	74	15	62	20	4	2	71	1.16
31428251--31428289	17	2.2	18	86	4	53	20	7	0	71	1.10
31440617--31440681	20	3.2	20	73	16	62	40	15	20	24	1.91
31440607--31440681	30	2.5	29	82	8	80	41	17	18	22	1.90
31442454--31442516	33	1.9	33	84	12	85	12	25	6	55	1.60
31442514--31442569	21	2.7	21	72	5	51	8	17	1	71	1.21
31442513--31442569	14	4.1	14	75	16	57	8	17	1	71	1.19
31442531--31442649	18	6.4	18	70	9	87	7	19	3	69	1.27
31442603--31442636	11	3.2	11	91	4	52	0	14	5	79	0.91
31442531--31442627	6	15.8	6	70	6	61	7	19	3	70	1.25
31443649--31443694	14	3.2	14	75	6	56	13	10	2	73	1.17
31446599--31446645	22	2.1	22	96	0	85	31	4	40	23	1.74
31448325--31448377	17	3.5	15	87	7	72	20	11	3	64	1.42
31448325--31448379	15	3.4	17	87	12	89	20	10	3	65	1.39
31448372--31448414	11	4.0	11	82	17	63	18	0	9	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31448373--31448413	21	2.0	21	95	4	75	17	0	9	73	1.09
31449403--31449449	23	2.1	23	84	7	62	51	12	4	31	1.59
31455456--31455552	30	3.2	30	75	2	106	28	26	15	28	1.96
31476826--31476872	20	2.3	20	88	0	76	21	10	36	31	1.88
31480145--31480191	20	2.3	20	85	0	67	21	12	36	29	1.91
31484190--31484251	10	5.9	10	74	10	52	33	32	3	30	1.74
31484190--31484252	21	3.0	21	88	2	90	33	33	3	30	1.74
31491295--31491393	21	4.4	23	78	6	80	25	3	31	40	1.71
31491330--31491393	21	3.0	21	88	2	92	29	3	32	34	1.73
31495317--31495365	10	4.9	10	78	9	55	26	30	16	26	1.97
31495317--31495363	20	2.3	20	89	7	69	25	31	17	25	1.97
31496710--31496735	13	2.0	13	100	0	52	46	7	0	46	1.31
31497125--31497163	20	1.9	21	89	5	62	35	12	28	23	1.91
31497655--31497701	20	2.3	20	85	7	60	25	34	17	23	1.96
31512941--31512987	20	2.3	20	81	0	58	29	34	12	23	1.92
31514477--31514512	10	3.2	12	85	14	51	72	8	5	13	1.27
31518385--31518419	18	1.9	18	88	11	54	22	20	0	57	1.41
31519317--31519350	13	2.6	13	95	0	59	8	0	8	82	0.85
31523443--31523489	20	2.3	20	85	0	67	29	36	12	21	1.91
31527566--31527599	11	3.1	11	86	0	50	67	0	8	23	1.18
31527677--31527708	16	2.0	16	93	0	55	62	6	9	21	1.47
31528611--31528649	15	2.4	17	83	16	55	71	0	20	7	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31528618--31528649	15	2.1	16	94	5	57	71	0	21	6	1.07
31531723--31531765	10	4.1	10	82	8	50	74	0	6	18	1.04
31531733--31531765	12	2.9	12	86	13	52	72	0	6	21	1.05
31531807--31531859	21	2.5	22	84	9	65	69	3	15	11	1.31
31531843--31531876	17	2.0	17	94	0	59	64	5	8	20	1.43
31532780--31532818	15	2.4	17	83	16	55	71	0	20	7	1.10
31532787--31532818	15	2.1	16	94	5	57	71	0	21	6	1.07
31535892--31535934	10	4.1	10	82	8	50	74	0	6	18	1.04
31535902--31535934	12	2.9	12	86	13	52	72	0	6	21	1.05
31535977--31536029	22	2.3	23	84	9	65	71	3	13	11	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216