genome.fa.s15.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  145  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45873488--45873535	24	2.1	21	82	17	53	45	16	10	27	1.80
45874610--45874676	21	3.2	21	81	8	66	34	17	31	16	1.93
45886306--45886395	45	2.0	45	97	0	171	33	26	10	30	1.89
45888594--45888645	27	1.9	27	88	0	77	21	17	23	38	1.93
45888608--45889071	27	17.1	27	84	3	353	19	17	23	39	1.92
45888608--45889071	54	8.6	54	82	3	441	19	17	23	39	1.92
45888650--45889071	81	5.2	81	83	1	468	18	17	24	39	1.92
45898385--45898411	14	1.9	14	100	0	54	51	7	0	40	1.30
45898675--45899123	140	3.2	139	85	7	459	40	16	10	32	1.83
45898730--45899123	93	4.2	94	90	2	609	40	15	11	31	1.83
45898755--45899123	47	7.9	47	90	1	582	40	15	11	32	1.83
45898730--45899123	23	17.0	23	67	18	185	40	15	11	31	1.83
45899778--45899901	43	2.9	43	80	11	137	32	29	18	19	1.96
45906438--45906667	47	4.9	47	93	1	390	39	14	12	33	1.84
45906413--45906667	93	2.7	93	92	3	415	40	14	12	32	1.84
45906921--45906955	15	2.3	15	90	9	54	51	22	0	25	1.48
45907605--45907728	43	2.9	43	80	11	137	31	29	19	19	1.96
45910483--45910628	37	4.0	37	93	1	242	24	21	16	36	1.94
45910592--45910958	46	7.6	46	86	7	437	28	22	14	34	1.93
45910635--45910952	52	6.3	52	86	7	417	28	22	13	35	1.92
45910592--45910944	196	1.8	196	92	0	598	28	22	14	35	1.93
45910592--45910958	98	3.7	97	84	9	492	28	22	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45920337--45920381	18	2.5	18	82	7	56	40	17	4	37	1.70
45920751--45920855	40	2.7	38	78	10	104	26	23	18	31	1.97
45929149--45929186	18	2.2	18	90	9	62	71	2	5	21	1.19
45929345--45929410	33	2.0	33	96	0	123	27	22	10	39	1.87
45939647--45939687	18	2.2	18	86	4	64	75	12	0	12	1.05
45939648--45939683	18	1.9	19	94	5	65	72	13	0	13	1.13
45961540--45961598	29	2.0	29	83	6	75	55	6	6	30	1.52
45968248--45968326	39	2.0	39	97	0	149	29	10	13	46	1.76
45968248--45968309	22	3.0	22	64	22	62	29	9	14	46	1.76
45973376--45973456	39	2.1	39	97	0	153	32	9	11	46	1.72
45973376--45973439	22	3.1	22	63	28	59	32	9	10	46	1.71
45973684--45973780	48	2.0	48	82	13	119	20	13	20	45	1.85
45978503--45978528	13	2.0	13	100	0	52	46	7	7	38	1.61
45979750--45979880	50	2.6	50	80	1	145	22	14	29	32	1.94
45987151--45987196	18	2.5	18	76	16	58	43	6	15	34	1.72
45988372--45988724	174	2.0	175	95	2	638	42	18	14	24	1.88
45990875--45990918	22	2.0	22	82	4	54	47	22	20	9	1.78
45994656--45994723	34	2.0	34	82	5	84	22	25	23	29	1.99
46006775--46007313	81	6.6	81	86	2	688	19	16	21	42	1.89
46006776--46007297	27	19.3	27	85	1	623	19	16	21	42	1.90
46007531--46007564	18	1.9	18	88	5	52	23	50	14	11	1.76
46018950--46019082	27	5.0	27	87	4	189	17	16	21	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46022414--46022504	27	3.4	27	87	0	128	16	16	19	47	1.83
46025927--46026015	20	4.7	20	63	19	55	20	3	2	74	1.07
46028543--46028590	18	2.7	18	78	9	62	41	2	16	39	1.60
46031777--46031834	26	2.2	27	78	9	66	24	5	1	68	1.19
46037175--46037934	47	15.9	47	93	3	1279	32	8	29	29	1.86
46037175--46037934	96	8.0	96	95	1	1327	32	8	29	29	1.86
46038053--46038131	37	2.1	37	90	0	122	24	18	31	25	1.98
46041249--46041511	40	6.6	40	87	3	316	26	28	20	24	1.99
46045389--46045612	40	5.6	40	90	1	308	26	28	20	25	1.99
46045392--46045650	80	3.3	80	86	3	265	26	28	20	24	1.99
46045387--46045650	120	2.2	118	81	5	307	26	28	20	24	1.99
46049511--46049547	16	2.3	16	86	13	58	54	5	0	40	1.24
46050986--46051046	19	3.3	19	65	17	56	39	16	9	34	1.82
46052852--46052887	12	3.2	12	88	11	58	22	0	0	77	0.76
46052849--46052894	17	2.9	16	87	9	60	26	0	0	73	0.83
46052844--46052913	29	2.4	28	77	17	79	18	5	0	75	0.99
46053271--46053318	22	2.2	22	84	0	60	18	2	6	72	1.15
46053267--46053335	10	6.3	10	76	20	59	20	1	5	72	1.13
46053277--46053335	22	2.7	22	84	2	75	20	0	6	72	1.06
46058497--46058636	70	2.0	70	100	0	280	44	10	17	28	1.81
46059878--46060098	30	7.4	30	91	0	325	16	31	33	19	1.94
46073912--46073976	28	2.3	28	89	0	94	16	6	16	60	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46077128--46077176	5	10.0	5	82	4	64	18	4	2	75	1.06
46079312--46079489	27	6.6	27	85	3	133	29	28	14	26	1.95
46079312--46079488	54	3.3	54	83	5	214	29	28	14	26	1.95
46079333--46079488	81	1.9	82	88	3	235	29	28	14	26	1.95
46083682--46083809	23	5.5	22	79	7	112	15	13	26	44	1.83
46083683--46083799	46	2.5	46	78	1	126	14	12	27	45	1.81
46089689--46089725	3	12.3	3	100	0	74	32	0	0	67	0.91
46089876--46089935	19	3.1	20	76	9	63	65	0	1	33	1.03
46090341--46090392	16	3.2	16	84	7	70	30	0	34	34	1.58
46090722--46090768	16	3.0	16	78	12	53	51	2	0	46	1.13
46090606--46091140	120	4.5	121	92	2	834	49	5	2	41	1.40
46090867--46090901	18	2.0	17	88	5	52	54	0	0	45	0.99
46090606--46091140	238	2.2	240	91	2	837	49	5	2	41	1.40
46090954--46091139	59	3.1	58	67	19	157	51	4	3	41	1.38
46091122--46091289	47	3.7	46	70	18	143	47	3	3	45	1.37
46091278--46091316	17	2.5	15	84	12	51	58	0	0	41	0.98
46097495--46097527	12	2.7	13	90	9	52	12	42	15	30	1.83
46105287--46105336	19	2.6	18	78	12	55	58	4	12	26	1.51
46112633--46112706	37	2.0	37	97	0	139	20	10	28	40	1.86
46113687--46113746	28	2.2	28	85	8	79	50	5	0	45	1.23
46114017--46114054	18	2.1	18	85	9	51	2	18	2	76	1.02
46118280--46118348	9	7.7	9	91	0	93	43	24	7	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46118390--46118433	20	2.2	20	84	8	54	25	0	6	68	1.14
46120544--46120581	13	2.8	14	84	4	51	28	18	10	42	1.83
46126815--46126908	30	3.1	30	92	1	152	26	24	6	42	1.78
46126825--46126902	15	5.2	15	67	11	61	26	21	7	43	1.80
46131478--46131525	15	3.2	15	71	11	53	27	22	8	41	1.82
46131816--46131846	7	4.6	7	96	4	55	45	12	9	32	1.75
46146226--46146256	14	2.2	14	94	0	53	77	9	0	12	0.99
46146358--46146411	19	2.8	19	88	0	81	40	9	12	37	1.76
46146390--46146434	23	2.0	22	82	4	54	40	4	17	37	1.70
46146612--46146661	23	2.2	23	81	0	55	22	0	16	62	1.33
46146681--46146713	15	2.1	16	94	5	59	30	9	0	60	1.27
46153402--46153968	88	6.4	88	89	0	821	29	27	22	20	1.99
46153979--46154144	44	3.8	44	88	3	237	26	18	26	28	1.98
46154198--46154311	50	2.3	50	84	0	147	25	20	24	29	1.99
46154508--46154980	44	10.9	43	70	14	215	29	20	23	26	1.99
46154495--46154906	217	1.9	218	93	0	709	29	20	23	26	1.99
46154636--46154979	45	7.8	44	73	10	231	29	20	23	26	1.99
46155527--46155580	19	2.8	19	94	0	99	37	9	16	37	1.81
46155527--46155603	38	1.9	40	87	10	113	36	7	16	38	1.78
46155787--46155831	23	2.0	23	81	0	54	22	0	15	62	1.33
46157664--46157713	20	2.5	21	83	9	68	58	4	10	28	1.49
46164207--46164254	21	2.3	21	89	7	71	4	16	4	75	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46168801--46168835	17	2.0	18	88	5	54	22	5	14	57	1.59
46169554--46169684	43	3.0	43	80	12	151	24	19	27	29	1.98
46169570--46169684	44	2.6	43	80	14	128	24	20	27	27	1.99
46171631--46171718	43	2.2	41	80	11	101	48	5	3	42	1.43
46193626--46193666	20	2.0	20	95	0	73	14	36	4	43	1.67
46200944--46201037	48	1.9	49	85	6	129	32	17	24	25	1.96
46202970--46203230	90	2.9	90	85	0	353	52	15	6	24	1.66
46205796--46205841	24	1.9	24	91	8	76	36	0	2	60	1.09
46205908--46206077	59	2.9	59	98	0	322	44	9	5	40	1.59
46206088--46206129	16	2.6	16	92	0	66	42	7	2	47	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216