genome.fa.s15.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  11  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3648551--3648610	31	1.9	31	83	6	77	53	15	8	23	1.68
3651767--3651797	12	2.5	13	89	10	55	32	0	0	67	0.91
3651904--3651946	22	2.0	22	81	9	52	48	2	2	46	1.27
3660336--3660387	27	2.0	27	85	11	72	53	3	11	30	1.54
3672192--3672234	21	2.0	21	100	0	86	27	4	18	48	1.68
3676412--3676467	28	2.0	28	96	0	103	23	21	23	32	1.98
3678007--3678061	26	2.1	26	96	0	101	38	30	10	20	1.87
3683794--3683831	18	2.1	19	90	5	60	21	21	5	52	1.66
3691922--3692053	66	2.0	66	100	0	264	31	6	15	46	1.70
3691930--3692037	34	3.2	34	69	23	111	33	5	14	46	1.68
3693460--3693503	7	6.4	7	94	5	81	59	11	0	29	1.32
3693460--3693503	20	2.1	21	95	4	81	59	11	0	29	1.32
3706143--3706184	20	2.1	20	95	0	75	40	4	0	54	1.21
3708633--3708665	14	2.4	14	100	0	66	54	0	0	45	0.99
3712187--3712241	26	2.1	26	89	0	83	38	30	10	20	1.87
3720284--3720329	9	4.9	9	79	10	56	10	2	2	84	0.79
3720284--3720340	18	3.1	17	78	14	51	8	7	1	82	0.91
3720286--3720340	29	1.9	28	81	3	65	7	7	1	83	0.87
3721056--3721082	2	13.5	2	100	0	54	48	0	0	51	1.00
3727509--3727591	41	2.0	41	100	0	166	26	21	22	28	1.99
3777199--3777244	17	2.5	19	76	23	53	50	0	6	43	1.28
3777338--3777384	17	2.8	17	79	20	62	55	6	2	36	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3777528--3777557	15	1.9	16	93	6	53	46	0	30	23	1.52
3777806--3777866	30	2.0	31	90	3	97	36	0	44	19	1.51
3792929--3793095	45	3.7	45	80	4	142	28	17	25	28	1.98
3803323--3803353	13	2.4	13	100	0	62	41	0	0	58	0.98
3806556--3806599	18	2.3	19	85	14	56	34	0	2	63	1.07
3812828--3812951	59	2.1	57	81	8	142	15	19	13	51	1.76
3813473--3813558	40	2.2	39	80	12	95	24	8	4	62	1.42
3814860--3814935	40	1.9	40	86	0	107	22	27	26	23	1.99
3822615--3822657	20	2.1	21	86	4	61	55	4	0	39	1.20
3824683--3824736	25	2.1	26	83	10	67	22	16	3	57	1.55
3824687--3824742	25	2.2	26	81	9	62	23	17	3	55	1.58
3831115--3831169	22	2.4	23	84	3	76	34	9	9	47	1.67
3831504--3831598	46	2.1	46	97	0	181	32	14	21	31	1.93
3832759--3832799	20	2.0	20	90	0	64	12	14	39	34	1.84
3834406--3834444	3	13.0	3	100	0	78	33	0	0	66	0.92
3835792--3836161	188	2.0	188	95	1	661	28	24	10	35	1.89
3837637--3837699	21	3.0	20	75	9	63	19	19	15	46	1.85
3837607--3837759	42	3.7	42	78	7	161	17	20	18	43	1.88
3837686--3837766	21	3.9	21	70	12	67	18	22	17	41	1.90
3837613--3837781	42	4.0	42	77	9	157	17	21	17	43	1.88
3849861--3849975	57	2.0	57	94	0	203	33	19	8	39	1.82
3850938--3851071	42	3.1	43	75	8	130	32	23	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3851022--3851194	48	3.6	48	83	3	231	28	21	18	31	1.97
3851362--3851447	32	2.7	30	84	10	118	46	15	8	30	1.74
3855058--3855147	44	2.0	44	95	0	162	28	4	31	35	1.77
3855067--3855135	22	3.1	22	62	22	54	30	2	28	37	1.72
3855077--3855151	22	3.3	24	66	21	70	33	4	26	36	1.75
3856186--3856252	5	13.8	5	77	22	72	38	0	0	61	0.96
3856186--3856257	8	8.8	8	85	14	94	38	0	0	61	0.96
3856189--3856255	3	25.0	3	76	22	69	38	0	0	61	0.96
3856186--3856255	29	2.6	27	86	13	101	38	0	0	61	0.96
3856189--3856261	37	2.0	35	87	12	103	39	0	0	60	0.97
3856271--3856350	40	2.0	41	95	2	144	62	10	27	0	1.27
3857074--3857131	30	1.9	30	89	0	89	41	3	24	31	1.71
3857343--3857374	13	2.5	13	94	0	55	31	0	12	56	1.37
3857469--3857710	50	4.7	50	86	4	297	26	24	29	19	1.99
3857469--3857718	100	2.4	103	88	6	364	26	24	29	20	1.99
3879640--3879676	12	3.0	13	84	11	51	29	40	18	10	1.85
3908877--3908933	29	1.9	30	92	3	98	19	43	0	36	1.51
3909038--3909097	30	2.0	31	90	3	95	20	38	0	41	1.52
3909183--3909213	16	1.9	16	93	0	53	25	29	0	45	1.54
3909201--3909245	20	2.2	21	84	11	58	22	33	0	44	1.53
3909357--3909403	17	2.8	17	79	20	62	36	2	6	55	1.37
3909497--3909542	17	2.5	19	76	23	53	43	6	0	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3910353--3910392	17	2.4	17	91	8	64	47	12	10	30	1.74
3912760--3912786	13	2.1	13	100	0	54	40	37	0	22	1.54
3913604--3913655	25	2.0	26	85	10	72	61	9	0	28	1.27
3914493--3914544	24	2.2	24	93	6	88	30	0	0	69	0.89
3914497--3914561	17	3.8	16	84	13	60	35	0	0	64	0.94
3914516--3914561	17	2.8	16	87	12	67	34	0	0	65	0.93
3929311--3929353	11	4.1	10	82	8	50	69	9	9	11	1.36
3932293--3932715	44	9.6	44	76	6	318	33	15	18	31	1.93
3932323--3932715	89	4.4	87	79	6	362	33	16	18	32	1.93
3932293--3932715	133	3.2	133	81	4	489	33	15	18	31	1.93
3932337--3932747	221	1.9	221	81	3	504	33	16	18	31	1.94
3938920--3939012	18	5.2	18	90	0	141	30	21	15	33	1.94
3956860--3957004	69	2.1	69	96	0	263	39	10	7	42	1.67
3963468--3963526	6	10.0	6	72	17	52	76	0	22	1	0.88
3963467--3963525	18	3.3	17	86	9	82	77	0	20	1	0.85
3963482--3963523	10	4.3	10	85	14	61	78	0	19	2	0.86
3963560--3963603	22	2.0	22	95	0	79	38	9	29	22	1.85
3964734--3964785	25	2.0	26	85	10	72	61	9	0	28	1.27
3965622--3965670	25	1.9	26	95	4	91	32	2	0	65	1.04
3965622--3965670	26	1.9	25	91	4	80	32	2	0	65	1.04
3965646--3965692	17	2.8	17	87	9	69	34	0	0	65	0.93
3965619--3965675	25	2.3	25	87	6	89	29	3	0	66	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3965654--3965702	18	2.8	17	84	9	55	34	0	0	65	0.93
3966175--3966419	123	2.0	123	87	3	359	30	14	10	44	1.78
3971813--3971882	35	2.0	35	88	0	104	41	4	4	50	1.42
3972409--3972523	38	3.0	38	81	7	135	23	20	20	35	1.96
3972462--3972574	38	3.0	38	80	7	106	25	23	20	30	1.99
3978094--3978161	33	2.1	33	100	0	136	23	19	20	36	1.95
3980326--3980374	18	2.6	18	80	6	53	30	6	22	40	1.78
3981990--3982070	35	2.3	36	81	8	96	49	2	11	37	1.52
3982306--3982354	5	9.2	5	78	12	53	59	2	2	36	1.21
3982405--3982438	3	11.3	3	93	0	59	67	2	0	29	1.05
3982405--3982442	9	4.2	9	93	0	58	65	5	0	28	1.14
3982983--3983022	16	2.3	18	80	20	50	70	5	5	20	1.26
3984414--3984498	42	2.0	41	88	2	125	41	14	5	38	1.70
3987271--3987326	28	2.0	28	96	0	103	39	8	3	48	1.52
3988420--3988463	21	2.0	21	86	4	61	63	11	9	15	1.51
3996746--3996780	6	5.8	6	96	0	52	0	17	25	57	1.40
3996734--3996781	18	2.7	18	80	3	53	0	14	25	60	1.34
3996743--3996781	6	6.5	6	93	0	51	0	17	23	58	1.38
3996743--3996781	12	3.2	12	88	0	60	0	17	23	58	1.38
3997014--3997084	30	2.4	31	79	6	76	40	0	2	56	1.14
3997879--3997909	15	2.1	15	100	0	62	54	0	12	32	1.38
3998412--3998499	31	2.9	31	79	12	110	48	4	2	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3998848--3998886	11	3.6	11	89	3	62	23	25	0	51	1.49
4000045--4000080	7	5.3	7	96	3	65	27	0	11	61	1.30
4000606--4000648	18	2.4	18	92	0	68	20	27	9	41	1.83
4001935--4002008	23	3.5	23	75	22	90	60	4	6	28	1.40
4001941--4001984	17	2.8	15	83	12	61	59	4	6	29	1.44
4002328--4002365	15	2.5	15	91	0	58	39	7	28	23	1.83
4002906--4003100	97	2.0	97	86	0	273	30	14	20	34	1.93
4007040--4007075	14	2.6	14	100	0	72	55	13	0	30	1.39
4007853--4007881	6	4.8	6	100	0	58	51	34	13	0	1.42
4008893--4008955	30	2.1	30	96	0	117	57	15	3	23	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216