genome.fa.s15.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  98  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30514894--30514941	22	2.3	22	85	7	64	60	8	4	27	1.44
30530369--30530440	35	2.1	35	94	0	126	29	6	29	34	1.83
30531290--30531315	13	2.0	13	100	0	52	53	0	0	46	1.00
30540073--30540131	30	2.0	30	90	3	93	52	11	5	30	1.59
30591727--30591775	1	49.0	1	95	0	89	97	2	0	0	0.14
30603046--30603575	138	3.8	138	78	10	603	45	5	9	40	1.58
30603215--30603575	148	2.5	150	79	12	393	47	5	9	38	1.58
30624146--30624193	20	2.4	20	85	0	60	16	10	35	37	1.83
30630932--30630980	10	4.9	10	78	9	55	28	16	30	24	1.96
30630924--30630980	20	2.9	19	87	7	87	29	17	29	22	1.97
30640562--30640627	25	2.6	25	92	0	105	28	21	15	34	1.93
30650346--30650391	24	1.9	24	95	0	83	30	13	19	36	1.90
30655566--30655641	38	2.0	39	94	2	136	44	21	7	26	1.79
30656030--30656063	17	1.9	18	88	5	52	41	17	5	35	1.74
30660005--30660059	28	2.0	28	100	0	110	43	7	14	34	1.73
30663239--30663284	19	2.3	20	96	3	85	47	17	10	23	1.79
30663736--30663771	17	2.1	18	94	5	65	58	13	0	27	1.36
30666687--30666783	21	4.7	21	70	12	76	36	16	29	17	1.92
30666811--30666876	21	3.2	21	72	12	73	33	12	31	22	1.91
30666821--30666887	20	3.3	20	74	12	73	34	13	34	17	1.89
30666649--30666881	123	1.9	123	83	5	301	35	15	29	19	1.92
30666634--30666877	82	3.0	83	81	3	289	34	15	30	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30666639--30666911	41	6.7	41	80	5	255	34	14	30	20	1.92
30666681--30666904	123	1.8	123	81	3	281	35	14	29	20	1.92
30666639--30666910	82	3.3	81	79	3	285	34	14	30	19	1.92
30669581--30669803	27	8.3	27	83	0	266	39	22	19	19	1.93
30670126--30670186	28	2.2	27	88	2	86	22	21	22	32	1.98
30670151--30670219	33	2.1	34	83	8	88	23	21	24	30	1.99
30682921--30682984	32	2.0	33	93	3	112	26	12	10	50	1.73
30688192--30688296	49	2.1	50	82	1	122	31	9	12	46	1.73
30688746--30688847	31	3.2	31	81	10	116	25	10	14	49	1.76
30690325--30690371	21	2.3	19	85	10	58	65	4	8	21	1.37
30690316--30690372	21	2.9	20	75	17	57	64	5	8	21	1.41
30691265--30691328	27	2.3	27	81	7	76	70	0	15	14	1.17
30691343--30691385	17	2.5	17	84	3	50	69	2	16	11	1.28
30693527--30693697	51	3.4	51	78	4	184	29	25	14	30	1.94
30700798--30701065	41	6.6	40	75	9	220	33	27	14	24	1.94
30700824--30700981	82	1.9	82	93	0	271	32	27	13	25	1.94
30709794--30710060	41	6.5	42	75	9	191	33	25	15	25	1.95
30709795--30710034	82	2.9	81	82	7	279	32	25	15	27	1.95
30712485--30712523	19	2.0	20	85	9	55	61	0	30	7	1.24
30719066--30719372	155	2.0	155	99	0	605	28	22	20	28	1.98
30720261--30720311	23	2.2	23	86	6	68	41	21	9	27	1.84
30723354--30723841	50	9.6	50	88	2	654	25	21	30	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30725354--30725404	23	2.2	23	89	6	77	41	19	9	29	1.84
30732949--30733333	51	7.6	50	80	6	409	30	25	15	28	1.96
30732942--30733333	152	2.6	151	88	3	565	30	25	15	29	1.96
30732942--30733333	101	3.9	100	80	6	432	30	25	15	29	1.96
30735797--30735843	17	2.8	17	71	9	51	34	2	17	46	1.59
30737462--30737491	12	2.5	12	94	0	51	30	40	23	6	1.80
30738612--30738639	14	2.0	14	100	0	56	35	21	7	35	1.81
30740002--30740080	37	2.1	37	90	0	122	27	31	16	24	1.96
30740484--30740566	27	3.3	27	63	16	77	34	30	3	31	1.75
30740199--30740743	47	11.5	47	93	1	874	29	29	8	32	1.87
30743128--30743305	27	6.6	27	84	3	205	26	14	28	29	1.95
30743128--30743305	54	3.3	55	84	4	227	26	14	28	29	1.95
30751206--30751383	27	6.6	27	83	3	205	26	15	28	29	1.96
30751207--30751362	82	1.9	81	88	3	233	26	15	28	29	1.96
30751203--30751383	82	2.2	81	83	2	229	27	15	27	29	1.96
30759980--30760009	14	2.1	14	93	0	51	40	0	43	16	1.48
30760556--30760603	22	2.3	22	85	7	64	60	8	4	27	1.44
30760788--30760834	24	1.9	25	83	12	62	38	17	10	34	1.84
30762888--30762944	20	2.9	19	82	7	78	28	17	31	22	1.97
30763192--30763225	14	2.4	14	90	0	50	35	5	17	41	1.74
30785343--30785450	20	5.3	20	72	11	78	12	31	18	37	1.89
30788741--30788838	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30788769--30788851	27	3.0	27	87	5	96	30	12	25	32	1.92
30788741--30788852	28	4.0	27	83	6	98	28	12	25	33	1.92
30796526--30796623	27	3.5	28	90	2	135	26	13	28	31	1.94
30796554--30796636	27	3.0	27	87	5	96	30	12	25	32	1.92
30796526--30796637	28	4.0	27	83	6	98	28	12	25	33	1.92
30804605--30804756	40	3.8	40	84	0	187	31	17	28	23	1.96
30804606--30804756	80	1.9	80	87	0	221	31	17	28	23	1.97
30809898--30810119	40	5.7	40	79	10	199	25	20	28	25	1.99
30817402--30817531	39	3.3	38	80	12	131	23	19	29	27	1.98
30817402--30817531	38	3.3	39	80	14	144	23	19	29	27	1.98
30817402--30817569	77	2.1	80	79	10	186	24	19	28	27	1.99
30821030--30821204	27	6.6	27	84	6	196	30	28	14	27	1.95
30821030--30821204	53	3.3	51	84	9	208	30	28	14	27	1.95
30828960--30829134	26	6.6	27	83	7	196	30	28	14	26	1.95
30835990--30836028	21	1.9	20	84	5	51	71	5	5	17	1.23
30843675--30843719	23	2.0	23	95	0	81	28	4	28	37	1.77
30848735--30848779	23	2.0	23	95	0	81	28	4	28	37	1.77
30851527--30851578	25	2.1	25	96	0	95	30	21	15	32	1.94
30856752--30856850	23	4.3	23	90	0	153	21	19	26	33	1.97
30859054--30859080	11	2.5	11	100	0	54	29	44	0	25	1.54
30864154--30864181	3	9.3	3	100	0	56	0	64	0	35	0.94
30865001--30865086	45	1.9	45	92	0	145	32	24	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30865092--30865278	51	3.7	50	79	4	214	29	27	17	25	1.97
30865091--30865274	101	1.8	101	89	3	289	30	26	17	25	1.98
30868767--30868802	15	2.5	15	86	4	56	77	2	5	13	1.05
30874525--30874709	101	1.8	102	87	5	277	24	17	27	30	1.97
30874713--30874807	45	2.1	45	90	0	154	27	17	24	30	1.97
30890599--30890626	14	2.0	14	100	0	56	42	14	0	42	1.45
30895865--30895890	3	8.7	3	100	0	52	0	34	0	65	0.93
30897298--30897328	3	10.3	3	100	0	62	64	0	0	35	0.94
30900494--30900621	52	2.4	52	84	5	159	43	17	16	22	1.87
30900485--30900621	27	5.1	27	81	5	154	43	16	16	24	1.86
30900485--30900648	79	2.0	81	81	6	192	43	16	16	23	1.87
30900651--30900730	42	1.9	42	89	0	124	25	26	22	26	2.00
30900693--30900914	27	8.3	27	88	1	338	33	21	22	23	1.97
30900955--30901036	24	3.5	24	76	5	60	20	3	24	51	1.64
30901100--30901164	27	2.4	27	80	14	73	27	24	15	32	1.95
30902567--30902617	10	5.1	10	75	15	52	31	15	27	25	1.96
30902569--30902622	20	2.7	20	88	0	81	31	16	27	24	1.96
30902836--30903046	32	6.6	32	84	3	219	21	20	22	35	1.96
30903058--30903122	22	3.0	21	73	13	60	16	20	18	44	1.87
30903116--30903168	26	2.0	26	85	0	70	20	28	18	32	1.97
30907087--30907118	15	2.0	17	88	11	50	21	0	15	62	1.32
30913067--30913104	20	1.9	20	94	0	67	36	28	10	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30916309--30916355	24	2.1	21	84	11	58	31	4	40	23	1.74
30917714--30917802	23	3.9	23	93	0	151	37	4	25	32	1.76
30918856--30918920	29	2.2	31	86	10	91	32	9	21	36	1.85
30919385--30919414	15	2.0	15	93	0	51	63	10	6	20	1.47
30919400--30919596	27	7.3	27	76	5	105	39	17	16	25	1.91
30919469--30919597	53	2.4	53	81	5	143	35	20	17	26	1.95
30919678--30919708	16	1.9	16	93	0	53	32	25	16	25	1.96
30920602--30920647	23	2.0	23	91	0	74	39	17	8	34	1.80
30920604--30920653	23	2.2	23	85	0	64	42	18	10	30	1.82
30923330--30923386	15	3.6	16	86	13	75	49	7	12	31	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216