genome.fa.s15.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  197  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61202030--61202081	21	2.5	20	77	17	52	17	3	1	76	1.02
61202322--61202384	24	2.7	24	85	2	83	25	15	17	41	1.89
61202905--61202984	26	2.9	27	81	9	83	56	2	3	37	1.31
61202904--61202977	8	8.3	9	72	15	57	55	2	2	39	1.28
61202900--61202967	18	3.8	19	75	13	72	55	4	1	38	1.29
61204597--61204710	21	5.4	21	68	0	84	16	25	17	40	1.90
61204597--61204735	42	3.3	42	82	0	161	16	23	17	41	1.89
61208463--61208509	20	2.3	20	78	7	51	48	2	10	38	1.50
61209037--61209176	74	1.9	74	82	5	176	18	24	18	38	1.93
61209047--61209212	49	3.4	48	73	9	113	18	25	19	36	1.94
61209013--61209265	25	10.2	24	71	8	109	20	25	19	35	1.96
61213325--61213363	18	2.2	17	86	13	53	33	0	20	46	1.51
61213482--61213510	8	3.6	8	100	0	58	24	13	27	34	1.93
61213597--61213669	23	3.2	23	90	0	119	24	21	23	30	1.99
61215169--61215307	62	2.2	62	80	3	163	19	32	23	24	1.98
61216216--61216241	13	2.0	13	100	0	52	53	30	15	0	1.42
61220535--61220794	30	8.7	30	84	6	307	31	7	16	43	1.76
61220564--61220609	24	1.9	24	90	0	74	34	8	10	45	1.70
61229356--61229490	42	3.2	43	78	16	122	31	26	17	25	1.97
61229377--61229499	44	2.8	42	78	11	117	31	25	17	25	1.97
61230654--61230682	14	2.0	15	93	6	51	51	20	0	27	1.47
61231365--61231657	30	9.4	30	83	6	307	33	7	16	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61237526--61237581	24	2.3	24	84	6	69	30	21	28	19	1.98
61237711--61237777	25	2.8	24	80	8	73	34	16	23	25	1.95
61242149--61242387	126	1.9	126	96	0	442	39	14	7	37	1.76
61246455--61246518	22	2.8	22	76	7	56	65	12	10	10	1.47
61247583--61247612	3	10.0	3	100	0	60	66	0	33	0	0.92
61249293--61249378	42	2.0	42	93	4	147	41	13	16	27	1.86
61251265--61251291	14	1.9	14	100	0	54	51	0	33	14	1.43
61252733--61252980	28	8.9	28	90	0	363	27	23	23	25	2.00
61253089--61253152	26	2.5	26	89	0	101	37	20	18	23	1.94
61253308--61253510	27	7.6	27	83	8	229	18	17	21	43	1.88
61253308--61253510	53	3.8	53	83	7	234	18	17	21	43	1.88
61253307--61253509	80	2.5	81	84	7	254	18	17	20	43	1.88
61259208--61259247	20	1.9	22	90	10	66	45	0	0	55	0.99
61259208--61259247	22	1.9	20	85	10	53	45	0	0	55	0.99
61260476--61260628	39	3.6	39	68	21	101	18	18	19	43	1.89
61260485--61260635	45	3.3	44	86	4	203	19	17	18	44	1.87
61266628--61266728	5	20.6	5	86	11	147	41	0	0	58	0.98
61266949--61266984	14	2.6	14	86	0	54	77	0	22	0	0.76
61267976--61268052	33	2.3	33	93	0	127	19	18	22	40	1.92
61268009--61268102	45	2.1	45	92	4	154	19	17	20	43	1.88
61276368--61276392	12	2.1	12	100	0	50	16	0	8	76	1.02
61277099--61277336	50	4.6	50	83	5	237	26	21	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61277100--61277336	100	2.3	99	82	9	271	26	21	29	23	1.99
61277575--61277613	20	2.0	20	90	10	62	56	5	23	15	1.59
61281740--61281853	56	2.0	57	94	1	203	27	10	24	37	1.88
61284524--61284647	50	2.5	50	83	0	158	27	24	28	20	1.99
61284909--61284947	20	2.0	20	90	10	62	56	5	23	15	1.59
61291059--61291089	14	2.1	14	94	5	53	51	19	0	29	1.47
61302766--61302836	27	2.7	27	86	2	99	33	19	15	30	1.93
61304261--61304303	22	1.9	23	90	4	70	65	4	20	9	1.40
61304261--61304308	22	2.2	22	85	7	62	66	6	18	8	1.39
61305231--61305295	3	20.7	3	78	9	67	26	4	1	67	1.18
61305231--61305304	24	3.1	22	83	11	85	25	4	2	67	1.21
61305445--61305474	15	1.9	16	93	6	53	16	16	6	60	1.56
61314659--61314743	44	1.9	44	90	0	134	27	24	9	38	1.86
61314870--61314898	14	2.1	14	100	0	58	13	6	20	58	1.58
61317313--61317371	3	18.7	3	76	10	55	25	5	1	67	1.20
61332027--61332979	45	21.2	45	80	5	1061	29	16	24	29	1.96
61332027--61332983	135	7.1	135	91	1	1377	29	16	24	29	1.96
61341608--61341692	44	1.9	44	90	0	134	27	24	9	38	1.86
61343726--61343771	20	2.3	20	85	3	58	50	0	0	50	1.00
61343938--61343976	18	2.1	19	85	4	53	53	0	2	43	1.14
61344938--61344967	15	2.1	14	93	6	51	76	0	0	23	0.78
61346467--61346504	16	2.4	16	100	0	76	18	26	31	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61346514--61346620	41	2.6	41	87	0	160	36	21	16	25	1.94
61348354--61348400	22	2.2	22	85	11	62	65	10	14	8	1.45
61349334--61349391	15	3.9	14	76	13	55	27	5	1	65	1.23
61349329--61349386	29	2.0	31	86	10	86	25	5	3	65	1.29
61353971--61354027	18	3.1	18	97	2	105	38	15	17	28	1.91
61355910--61356006	3	32.0	3	74	13	65	32	4	1	61	1.21
61355914--61356006	22	3.8	24	74	17	68	33	4	1	61	1.23
61355911--61356012	25	3.9	26	75	13	93	32	3	1	61	1.25
61359497--61359556	30	2.0	31	86	3	86	20	40	0	40	1.52
61366376--61366404	14	2.1	14	100	0	58	13	6	20	58	1.58
61368306--61368351	20	2.3	20	85	3	58	50	0	0	50	1.00
61369060--61369214	50	3.1	50	74	17	187	47	1	3	46	1.31
61369100--61369145	21	2.1	23	92	8	78	45	0	0	54	0.99
61369085--61369165	26	3.2	25	76	20	80	48	1	0	50	1.08
61369104--61369153	21	2.3	22	86	6	66	48	0	0	52	1.00
61369507--61369558	25	2.0	26	88	3	79	25	19	1	53	1.55
61371589--61371622	4	8.5	4	93	0	59	23	0	2	73	0.97
61375850--61375904	15	3.7	15	79	11	60	25	7	1	65	1.28
61378019--61378058	20	2.0	20	90	0	62	50	12	10	27	1.72
61378007--61378073	34	1.9	35	84	3	91	46	13	8	31	1.74
61385703--61385747	23	2.0	23	82	8	56	33	4	11	51	1.58
61386315--61386528	42	5.1	42	84	4	249	30	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61388354--61388394	13	3.0	14	79	13	50	82	7	2	7	0.91
61388347--61388408	33	2.0	30	87	9	88	80	8	3	8	1.00
61390780--61390901	44	2.8	44	79	8	140	29	14	26	29	1.95
61390984--61391021	18	2.1	18	100	0	76	34	26	10	28	1.90
61391156--61391223	34	2.0	34	94	0	118	30	13	30	25	1.93
61391035--61391354	165	1.9	165	90	0	514	32	17	24	25	1.97
61391190--61391541	131	2.7	130	94	1	598	29	20	23	25	1.99
61391327--61391511	44	4.2	44	65	14	103	30	20	24	25	1.98
61391559--61391674	50	2.3	49	79	1	124	39	21	14	24	1.91
61391520--61391786	49	5.4	50	73	5	213	34	21	18	25	1.96
61391520--61391809	97	2.9	98	83	2	339	35	21	17	26	1.95
61391994--61392089	48	2.0	48	95	0	174	25	19	21	33	1.97
61391805--61392596	44	18.1	44	68	12	292	28	19	23	28	1.98
61392046--61392610	218	2.6	218	91	0	905	27	20	23	28	1.99
61392634--61392772	50	2.8	50	78	0	152	30	22	20	25	1.98
61394230--61394268	20	1.9	21	89	5	62	33	7	0	58	1.26
61400254--61400313	26	2.3	25	77	8	66	45	3	0	51	1.17
61400751--61400789	15	2.5	15	87	8	51	64	0	0	35	0.94
61405139--61405168	12	2.5	12	94	0	51	53	0	10	36	1.35
61408272--61408370	23	4.3	23	93	0	162	22	21	27	29	1.99
61415379--61415417	18	2.2	17	86	13	53	33	0	20	46	1.51
61415642--61415717	23	3.3	23	88	0	116	22	21	26	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61419619--61419718	24	4.1	24	85	3	130	18	27	21	34	1.96
61419550--61419718	48	3.5	49	76	13	136	16	27	21	34	1.95
61419549--61419718	72	2.3	72	77	10	177	17	27	21	34	1.95
61425593--61425787	34	5.7	34	90	1	282	20	24	17	37	1.94
61425558--61425787	69	3.3	69	89	1	327	20	22	18	38	1.94
61425553--61425787	103	2.3	104	90	0	364	20	22	18	39	1.93
61430670--61430975	111	2.8	110	89	3	442	33	20	16	29	1.95
61433364--61433958	132	4.5	132	96	0	1073	26	23	18	31	1.98
61433551--61433898	44	7.9	42	66	21	153	25	25	18	29	1.98
61435271--61435324	10	5.5	10	79	20	69	11	11	0	77	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216