genome.fa.s15.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  119  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37896419--37896457	20	2.0	20	90	5	62	41	0	0	58	0.98
37897874--37897899	12	2.2	12	100	0	52	38	7	34	19	1.80
37901114--37901154	20	2.0	20	100	0	82	46	29	14	9	1.77
37905398--37905444	18	2.6	18	86	6	60	25	21	27	25	1.99
37909078--37909232	41	3.9	41	79	10	169	20	19	29	30	1.97
37909579--37909631	21	2.5	21	84	6	63	22	0	39	37	1.54
37915237--37915422	102	1.8	102	96	2	347	40	6	10	41	1.66
37915400--37915503	42	2.5	43	80	4	131	22	9	29	38	1.86
37916252--37916283	16	2.0	16	100	0	64	56	12	18	12	1.67
37928502--37928545	6	7.3	6	100	0	88	34	15	0	50	1.45
37940648--37940696	4	12.2	4	100	0	98	24	0	24	51	1.49
37940723--37940803	23	3.5	23	80	6	101	33	8	19	38	1.83
37940717--37940804	46	1.9	46	92	0	149	30	9	20	39	1.83
37940723--37940814	23	4.0	23	76	8	71	35	8	18	36	1.82
37940998--37941075	31	2.5	31	91	0	120	19	25	11	43	1.84
37941787--37941862	13	5.8	13	77	11	84	34	5	25	35	1.78
37942131--37942157	8	3.4	8	100	0	54	44	0	0	55	0.99
37942975--37943035	31	2.0	31	93	0	104	37	8	9	44	1.68
37944240--37944268	2	14.5	2	100	0	58	51	0	0	48	1.00
37955425--37955933	49	10.6	49	93	2	804	28	29	8	33	1.86
37955425--37955933	145	3.5	145	94	1	846	28	29	8	33	1.86
37959261--37959310	25	2.0	25	96	0	91	20	14	28	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37959263--37959362	25	4.0	23	78	8	65	26	13	24	37	1.91
37959847--37959929	25	3.3	25	86	3	114	20	15	26	37	1.93
37959849--37959953	25	4.2	23	82	9	93	23	14	24	37	1.92
37959852--37959947	50	1.9	50	81	8	115	25	15	23	35	1.94
37959011--37960187	586	2.0	585	95	0	2111	27	15	24	31	1.96
37969112--37969160	21	2.3	22	79	10	57	32	16	4	46	1.65
37976544--37976603	31	1.9	31	89	0	93	38	13	3	45	1.60
37988146--37988180	18	1.9	18	88	11	54	57	8	2	31	1.44
37990550--37990607	27	2.2	26	78	9	64	17	22	22	37	1.93
37995422--37997493	882	2.4	875	85	3	2831	33	15	19	31	1.93
38006925--38007071	50	2.8	50	79	12	136	27	21	29	21	1.98
38009645--38009771	49	2.6	49	82	6	159	29	22	23	24	1.99
38016601--38016833	50	4.6	50	77	7	177	27	23	26	22	1.99
38044927--38045010	34	2.4	34	81	14	93	66	2	23	7	1.28
38045972--38046444	42	11.3	42	86	2	573	22	19	21	36	1.95
38045972--38046444	84	5.6	84	86	0	651	22	19	21	36	1.95
38045972--38046444	126	3.8	125	86	2	651	22	19	21	36	1.95
38046425--38046460	16	2.2	16	90	0	54	22	19	5	52	1.66
38047163--38047570	156	2.6	156	87	3	583	42	4	10	42	1.61
38050256--38050351	45	2.1	45	90	7	151	37	12	12	37	1.81
38051794--38051825	10	3.2	10	100	0	64	50	0	9	40	1.35
38069651--38070123	232	2.0	232	88	2	711	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38076932--38076981	24	2.1	24	84	0	64	46	16	18	20	1.85
38084121--38084155	12	2.9	12	100	0	70	25	34	17	22	1.96
38090177--38090233	19	3.2	19	70	27	61	26	12	15	45	1.82
38091543--38091584	20	2.1	20	86	0	57	47	21	23	7	1.75
38093212--38093451	23	10.4	23	74	3	160	48	23	16	11	1.78
38093252--38093451	46	4.3	46	78	1	195	49	23	17	10	1.77
38093212--38093451	91	2.6	93	76	3	218	48	23	16	11	1.78
38098522--38098807	51	5.6	50	80	5	324	29	15	26	29	1.96
38098522--38098799	102	2.7	102	90	1	425	29	15	26	29	1.96
38102097--38102227	50	2.6	52	79	6	151	36	12	15	35	1.86
38103880--38103909	11	2.7	11	94	0	51	46	0	3	50	1.18
38105360--38105474	57	2.0	57	98	0	221	35	6	18	39	1.78
38111293--38111577	85	3.4	85	94	0	491	34	24	16	24	1.95
38111293--38111615	85	3.8	85	88	2	445	34	24	15	24	1.95
38111592--38111641	26	1.9	26	87	0	73	26	34	22	18	1.96
38111977--38112033	30	1.9	30	89	3	89	28	22	7	42	1.80
38132136--38132403	104	2.6	105	93	1	450	29	30	20	18	1.97
38132731--38132794	30	2.2	29	81	10	76	29	28	6	35	1.82
38132738--38132794	30	1.9	30	85	3	80	29	24	7	38	1.82
38133956--38134030	37	2.0	37	94	0	132	22	32	10	34	1.89
38133963--38134040	37	2.3	33	84	10	95	21	34	10	33	1.87
38134763--38134809	20	2.4	19	82	10	58	25	14	4	55	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38137647--38137810	47	3.5	47	88	0	229	32	9	31	27	1.88
38140690--38140727	18	2.1	18	85	9	51	21	2	2	73	1.07
38141622--38141809	94	2.0	94	88	2	279	40	11	21	27	1.87
38144979--38145019	21	2.0	21	85	0	55	26	21	34	17	1.95
38146475--38146716	50	4.7	50	77	6	177	28	21	27	22	1.99
38150776--38150944	50	3.4	50	90	1	257	27	23	14	34	1.94
38150833--38150951	51	2.6	43	77	19	139	28	23	16	31	1.96
38152293--38152326	14	2.4	14	90	5	50	29	20	14	35	1.93
38163318--38163530	50	4.2	50	91	1	318	28	23	15	32	1.95
38163344--38163534	101	1.9	100	93	1	328	29	23	16	30	1.96
38163344--38163534	50	3.8	50	93	1	328	29	23	16	30	1.96
38164908--38164936	13	2.1	14	93	6	51	0	3	6	89	0.57
38170898--38170937	9	4.3	9	83	3	53	0	15	2	82	0.77
38170892--38170936	23	2.0	23	86	8	65	0	15	4	80	0.87
38171243--38171277	14	2.6	14	90	4	54	17	0	5	77	0.96
38171539--38171695	50	3.1	50	69	10	124	24	19	23	32	1.98
38171782--38172078	131	2.3	131	91	1	470	25	25	20	28	1.99
38171861--38172660	132	6.1	132	89	4	862	28	24	18	28	1.98
38172113--38172588	44	10.8	44	65	11	134	29	23	17	29	1.97
38172000--38172660	132	5.0	132	91	2	999	29	23	18	28	1.97
38171995--38172660	263	2.5	264	90	2	1018	29	24	18	28	1.98
38174963--38174995	16	2.1	16	94	0	57	3	21	0	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38174985--38175089	6	16.8	6	78	7	59	10	6	5	77	1.13
38174991--38175047	26	2.2	26	77	0	60	10	8	5	75	1.18
38175859--38175924	25	2.6	25	83	9	71	56	7	16	19	1.64
38185937--38185992	16	3.4	16	72	13	60	42	3	19	33	1.69
38185933--38185999	33	2.0	33	97	0	125	38	2	22	35	1.70
38187986--38188035	25	2.1	23	82	14	57	54	2	0	44	1.11
38197670--38197710	6	6.5	6	83	10	55	51	12	0	36	1.40
38197674--38197711	20	1.9	20	100	0	76	50	10	0	39	1.37
38203126--38203198	10	7.9	10	68	17	50	42	0	1	56	1.08
38203123--38203198	28	2.9	27	78	7	84	43	0	1	55	1.08
38203076--38203246	59	2.9	58	70	10	161	42	1	4	52	1.30
38203075--38203320	117	2.1	117	80	12	283	42	1	4	50	1.33
38203420--38203525	44	2.5	41	79	18	135	35	32	3	28	1.75
38203433--38203525	44	2.1	46	91	4	154	37	31	4	26	1.76
38203507--38203559	16	3.3	16	94	0	97	22	33	5	37	1.78
38203966--38204102	41	3.5	39	75	15	129	24	17	25	32	1.97
38210693--38210867	85	2.1	85	90	0	269	37	1	16	45	1.55
38216175--38216268	37	2.6	36	83	5	116	41	28	10	19	1.84
38217226--38217324	40	2.5	40	81	3	110	40	21	16	22	1.91
38217395--38217516	40	3.0	41	80	9	133	21	18	28	31	1.96
38217401--38217619	41	5.4	41	72	9	153	23	17	24	34	1.96
38218044--38218081	15	2.6	14	87	4	58	18	0	36	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38218241--38218378	22	6.4	22	70	15	74	23	1	33	41	1.64
38218277--38218324	15	3.3	15	82	5	62	18	0	35	45	1.50
38217920--38218346	233	1.8	233	95	1	775	30	2	22	43	1.68
38218242--38218392	7	21.1	7	71	11	83	23	1	34	40	1.63
38222555--38222827	86	3.2	86	82	2	300	28	15	25	30	1.96
38222609--38222842	129	1.8	128	85	2	335	29	17	24	29	1.97
38222555--38222833	43	6.5	43	83	1	258	29	16	25	29	1.96
38225794--38225979	50	3.7	50	86	1	239	25	24	29	20	1.99
38225795--38226018	50	4.5	49	84	3	148	27	23	27	21	1.99
38226228--38226266	12	3.2	12	85	0	51	51	5	23	20	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216