genome.fa.s15.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  140  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44427787--44427932	65	2.2	65	98	0	283	17	10	28	43	1.83
44430646--44430685	15	2.8	15	92	7	66	55	5	5	35	1.44
44441625--44441667	22	2.0	22	86	4	61	62	18	6	11	1.50
44452149--44452264	60	1.9	60	89	0	178	16	30	12	40	1.86
44457683--44457754	35	2.0	36	91	2	119	30	11	31	26	1.91
44459269--44459350	28	3.0	28	73	18	73	60	4	0	34	1.18
44459310--44459347	18	2.2	18	90	4	60	65	0	0	34	0.93
44464834--44464933	50	2.0	50	94	0	173	35	18	13	34	1.89
44464957--44465043	26	3.2	26	65	15	68	35	8	11	44	1.70
44464935--44465043	55	2.0	55	92	0	182	32	11	11	45	1.74
44468952--44468976	13	1.9	13	100	0	50	44	16	8	32	1.76
44473701--44473744	22	2.1	21	87	8	63	22	0	6	70	1.11
44480677--44480821	32	4.5	32	84	1	157	34	22	13	29	1.93
44480677--44480821	64	2.3	64	83	4	177	34	22	13	29	1.93
44481411--44481445	18	1.9	18	94	0	61	37	11	20	31	1.88
44481423--44481470	25	1.9	25	91	0	78	39	14	18	27	1.90
44481407--44481505	43	2.3	43	91	0	153	36	15	20	28	1.92
44485142--44485317	96	1.8	96	83	0	235	35	13	17	34	1.88
44489575--44489649	39	1.9	39	91	0	123	30	32	8	29	1.86
44490345--44490386	20	2.0	22	86	9	61	28	4	26	40	1.76
44491375--44491443	20	3.5	20	75	11	79	37	18	10	33	1.85
44491363--44491441	39	2.0	39	95	0	140	35	15	10	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44492676--44492708	9	3.8	9	88	8	50	72	0	9	18	1.10
44492676--44492709	17	2.0	17	88	0	50	70	0	8	20	1.13
44501076--44501398	163	2.0	163	88	2	479	31	16	23	28	1.96
44502642--44502710	4	15.8	4	74	24	52	30	1	0	68	0.99
44502645--44502688	10	4.6	10	94	5	74	36	0	0	63	0.95
44502645--44502695	20	2.8	18	86	13	77	35	0	0	64	0.94
44505536--44505614	37	2.1	37	90	0	122	25	31	18	24	1.98
44505733--44506182	47	9.4	47	91	2	639	28	28	9	32	1.88
44508297--44508479	40	4.6	40	81	6	203	23	28	22	25	1.99
44508787--44508865	29	2.7	29	86	5	106	27	32	15	24	1.95
44508847--44508950	43	2.4	43	96	0	199	25	35	15	23	1.94
44510783--44510861	37	2.1	37	90	0	122	25	31	18	24	1.98
44511023--44511804	47	16.5	47	96	1	1321	28	29	9	32	1.89
44513960--44514153	105	1.8	106	87	1	291	29	15	25	28	1.96
44527304--44527331	14	2.0	14	100	0	56	64	0	7	28	1.20
44536649--44536692	19	2.3	19	88	7	63	59	27	2	11	1.44
44544496--44544539	23	1.9	23	86	9	63	40	0	2	56	1.11
44544496--44544545	23	2.2	23	82	10	59	44	0	4	52	1.20
44544636--44544980	180	1.9	180	84	5	466	30	10	9	49	1.69
44545358--44545416	21	2.9	21	82	9	61	35	0	5	59	1.20
44546544--44546655	54	2.1	54	82	0	134	22	25	16	35	1.95
44546544--44546655	27	4.1	27	83	0	116	22	25	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44551639--44551684	24	1.9	24	95	0	83	39	17	8	34	1.80
44559998--44560056	24	2.4	24	82	2	73	42	1	37	18	1.61
44565737--44565894	64	2.4	64	84	7	192	34	8	15	41	1.77
44567872--44567943	33	2.1	35	89	5	112	44	20	6	27	1.77
44573789--44573827	3	13.0	3	88	0	60	61	0	33	5	1.18
44575823--44575929	35	3.1	35	100	0	214	27	22	8	42	1.82
44586062--44586090	13	2.1	14	93	6	51	44	3	0	51	1.18
44586071--44586114	19	2.3	19	84	11	54	54	2	2	40	1.25
44587415--44587478	32	2.0	33	84	9	87	40	7	14	37	1.74
44588605--44588653	22	2.3	22	85	3	64	38	0	2	59	1.09
44596217--44596284	34	2.0	34	82	5	84	30	23	26	19	1.98
44602195--44602251	24	2.3	24	81	3	69	56	5	8	29	1.52
44602307--44602351	25	1.9	23	82	13	56	66	2	8	22	1.30
44608559--44608665	51	2.1	52	85	1	144	32	19	7	40	1.80
44610114--44610152	19	2.1	19	85	0	51	43	10	2	43	1.52
44613724--44613774	21	2.4	22	87	6	70	35	11	45	7	1.70
44620567--44620729	46	3.6	45	74	6	123	26	22	22	29	1.99
44621485--44621555	35	2.0	35	94	0	124	29	4	25	40	1.74
44623589--44623622	17	1.9	17	88	5	50	14	44	29	11	1.81
44636411--44636454	22	2.0	21	83	12	54	40	0	0	59	0.98
44646726--44646914	61	3.2	61	61	19	146	42	9	8	38	1.69
44646677--44647010	116	2.9	116	98	0	650	43	8	8	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44647015--44647058	22	2.1	21	91	8	72	31	0	25	43	1.55
44647041--44647616	29	21.3	29	72	22	317	27	0	25	46	1.54
44647074--44647151	39	2.0	39	100	0	156	25	0	25	48	1.51
44647045--44647180	68	2.0	68	100	0	272	26	0	26	47	1.53
44647192--44647235	22	2.1	21	87	8	63	31	0	22	45	1.53
44647138--44647506	80	4.8	80	81	9	478	28	0	24	47	1.55
44647275--44647414	23	6.0	21	83	12	118	30	0	20	48	1.55
44647136--44647740	103	5.8	102	80	11	576	27	0	26	45	1.55
44647522--44647551	15	2.0	15	93	0	51	20	0	30	50	1.49
44647543--44647695	36	4.2	36	75	18	133	26	0	30	43	1.55
44647161--44647610	74	5.9	73	75	16	300	28	0	24	46	1.55
44647612--44647744	23	5.7	23	68	18	94	25	0	30	44	1.54
44647600--44647694	43	2.3	42	92	3	156	25	0	34	40	1.56
44647650--44647717	29	2.3	29	94	0	118	25	0	29	45	1.54
44647671--44647740	24	2.7	25	74	17	72	25	0	28	45	1.54
44647750--44647835	43	2.0	45	90	4	140	50	12	0	37	1.41
44648941--44648965	7	3.6	7	100	0	50	60	12	0	28	1.32
44650144--44650200	22	2.5	22	88	2	87	40	0	33	26	1.56
44651587--44651619	16	2.1	16	94	0	57	36	3	36	24	1.71
44651599--44651695	44	2.2	44	87	5	133	30	4	29	35	1.76
44651852--44651886	18	2.0	17	88	5	52	54	0	0	45	0.99
44652018--44652069	19	2.7	19	72	16	54	46	3	1	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44652522--44652551	6	5.0	6	100	0	60	16	33	16	33	1.92
44658501--44658540	14	2.9	14	82	14	55	32	10	15	42	1.79
44660830--44660881	25	2.1	25	92	7	88	38	9	26	25	1.86
44663520--44663551	15	2.1	15	94	5	55	21	0	3	75	0.95
44669754--44669796	18	2.4	18	80	7	52	60	6	18	13	1.55
44679474--44679526	16	3.3	15	79	12	52	56	1	0	41	1.10
44679484--44679519	17	2.2	16	90	5	54	61	0	0	38	0.96
44682552--44682712	87	1.9	86	89	1	250	36	21	14	26	1.93
44686479--44686521	11	3.8	11	77	17	52	30	2	4	62	1.28
44686482--44686525	23	1.9	23	90	0	70	31	2	6	59	1.36
44689326--44689404	25	3.0	25	79	16	81	34	0	3	62	1.14
44697693--44698083	50	7.9	50	67	1	201	30	20	23	25	1.99
44697710--44698116	99	4.1	100	89	0	593	30	21	22	25	1.99
44697791--44698040	49	5.1	49	67	1	167	32	22	20	25	1.98
44697709--44698116	199	2.1	199	87	0	593	30	21	22	25	1.99
44698123--44698628	44	11.9	42	69	12	234	30	17	22	29	1.97
44700116--44700199	29	3.2	27	76	17	88	34	0	4	60	1.18
44701553--44701581	14	2.1	14	100	0	58	72	0	0	27	0.85
44704042--44704071	15	2.0	15	93	0	51	46	23	13	16	1.82
44706629--44706677	15	3.1	16	82	11	57	44	0	0	55	0.99
44708489--44708535	24	2.0	24	82	0	58	57	6	17	19	1.60
44711466--44712106	44	14.7	44	67	17	200	27	22	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44711337--44712017	217	3.1	217	89	0	979	27	22	20	29	1.98
44711688--44711801	45	2.6	44	80	9	124	28	23	20	28	1.99
44711906--44712107	45	4.5	44	75	17	186	25	25	20	28	1.99
44711901--44712107	89	2.3	89	91	1	344	25	25	20	28	1.99
44711337--44712182	434	1.9	431	80	6	956	27	22	20	29	1.98
44714983--44715035	27	2.0	26	96	3	97	26	13	18	41	1.87
44723949--44723983	15	2.3	15	95	0	61	65	11	0	22	1.24
44725399--44725431	14	2.3	15	94	5	59	75	12	6	6	1.16
44725398--44725432	15	2.3	16	85	14	56	77	11	5	5	1.12
44726313--44726395	39	2.1	40	90	2	132	54	20	3	21	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216