genome.fa.s15.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  167  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52683542--52683576	16	2.1	17	89	5	54	45	2	0	51	1.16
52698069--52698116	16	2.9	16	84	3	60	43	18	8	29	1.79
52699273--52699317	19	2.4	19	89	10	67	35	0	13	51	1.41
52702751--52702775	5	5.0	5	100	0	50	60	0	0	40	0.97
52712829--52712857	15	1.9	15	100	0	58	34	3	6	55	1.44
52715017--52715137	35	3.5	35	89	0	170	38	32	12	16	1.86
52723543--52723684	41	3.5	41	82	7	155	48	7	23	21	1.74
52731001--52731059	30	2.0	30	100	0	118	27	3	6	62	1.36
52735285--52735312	14	2.0	14	100	0	56	50	14	14	21	1.78
52738179--52738260	25	3.5	25	75	14	93	56	8	9	25	1.60
52738522--52738557	16	2.2	16	90	0	54	38	2	25	33	1.70
52738727--52738982	62	4.3	59	79	14	262	51	2	1	44	1.25
52738793--52738976	20	9.2	20	67	21	61	51	3	0	45	1.22
52738738--52738982	116	2.0	121	88	6	367	51	2	1	44	1.24
52739816--52739843	14	2.0	14	100	0	56	50	7	14	28	1.69
52762739--52762822	24	3.5	24	69	11	82	33	20	25	21	1.97
52762751--52762865	48	2.4	48	97	1	212	33	18	26	21	1.96
52762768--52762844	24	3.2	24	68	14	77	29	19	27	23	1.98
52766985--52767082	27	3.5	28	90	2	135	26	13	28	31	1.94
52767013--52767095	27	3.0	27	87	5	96	30	12	25	32	1.92
52766985--52767096	28	4.0	27	83	6	98	28	12	25	33	1.92
52774862--52774959	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52774890--52774972	27	3.0	27	87	5	96	30	12	25	32	1.92
52774862--52774973	28	4.0	27	83	6	98	28	12	25	33	1.92
52780379--52780502	41	3.0	41	98	0	239	45	13	4	36	1.65
52780736--52780839	25	4.2	25	73	6	95	32	19	25	22	1.97
52784035--52784077	18	2.4	18	88	0	59	69	4	13	11	1.33
52790019--52790127	6	17.0	6	66	19	51	74	2	4	18	1.11
52790045--52790096	23	2.5	20	79	14	59	73	5	3	17	1.19
52790042--52790105	22	2.8	23	79	13	62	75	4	4	15	1.14
52790069--52790127	28	2.0	29	87	6	84	79	1	3	15	0.94
52790069--52790112	13	3.2	13	87	9	61	81	2	0	15	0.78
52791660--52791696	12	3.0	12	88	4	56	70	2	0	27	1.01
52791710--52791777	31	2.3	30	80	16	79	64	1	4	29	1.21
52796196--52796253	30	1.9	30	92	0	98	12	24	32	31	1.91
52796967--52797018	20	2.6	20	81	0	59	48	11	13	26	1.77
52797153--52797203	20	2.5	20	80	3	57	33	13	9	43	1.77
52801089--52801246	84	1.9	83	85	5	223	34	24	6	34	1.81
52803422--52803474	25	2.1	25	82	6	63	58	1	5	33	1.32
52805914--52805976	27	2.3	28	88	2	92	33	1	15	49	1.55
52806273--52806310	17	2.2	18	85	4	51	34	5	7	52	1.53
52806344--52806384	18	2.3	18	86	0	55	29	2	19	48	1.61
52806308--52806387	36	2.2	36	82	4	90	28	5	20	46	1.71
52806965--52807073	51	2.1	51	88	6	159	27	8	17	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52809804--52810110	52	6.1	51	84	9	391	35	14	22	28	1.93
52809856--52810237	46	8.3	46	84	9	414	34	14	21	28	1.93
52809790--52810237	98	4.8	96	82	12	470	34	14	22	28	1.94
52809796--52810110	150	2.1	151	92	1	524	35	14	22	27	1.93
52810074--52810146	36	2.0	36	94	0	128	36	13	20	28	1.91
52810028--52810192	82	2.0	82	95	0	294	35	13	21	29	1.92
52818544--52818591	13	3.7	13	85	0	69	43	25	6	25	1.77
52818673--52818706	18	1.9	17	88	5	50	11	2	8	76	1.12
52818696--52818737	12	3.4	12	78	15	50	30	0	0	69	0.89
52819438--52819464	2	13.5	2	100	0	54	48	0	0	51	1.00
52824793--52824851	29	2.0	29	100	0	118	55	6	6	30	1.52
52830181--52830247	34	1.9	35	87	3	100	35	8	8	46	1.67
52830196--52830235	20	2.0	20	85	0	53	30	10	10	50	1.69
52831555--52831580	3	8.7	3	100	0	52	30	0	0	69	0.89
52838409--52838467	30	1.9	31	86	3	84	32	22	5	40	1.75
52847496--52847531	18	1.9	19	88	5	56	80	2	11	5	0.98
52849746--52849883	61	2.3	59	84	2	168	23	16	13	46	1.82
52868018--52868124	44	2.4	44	86	9	139	26	17	21	34	1.96
52868107--52868230	44	3.0	41	74	8	133	29	20	21	29	1.98
52868063--52868228	84	2.0	84	83	5	210	27	19	22	30	1.98
52877352--52877396	23	1.9	24	86	4	65	11	6	6	75	1.18
52877352--52877402	23	2.1	25	82	10	61	11	5	7	74	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52878995--52879057	35	1.9	34	84	12	87	58	1	4	34	1.29
52883496--52883636	43	3.3	43	73	11	128	40	18	17	23	1.91
52885940--52886041	41	2.5	41	80	6	118	36	19	17	26	1.94
52890098--52890217	41	2.9	41	87	0	150	27	20	25	27	1.99
52897566--52897679	41	2.8	40	86	5	131	26	19	26	28	1.99
52899085--52899168	31	2.7	31	90	1	107	44	16	8	30	1.77
52899110--52899169	31	1.9	31	96	0	111	45	15	10	30	1.78
52901600--52901685	37	2.3	37	80	7	95	31	17	25	25	1.97
52902642--52902777	57	2.4	57	77	4	148	25	17	12	44	1.84
52904537--52904573	18	2.1	18	100	0	74	27	21	5	45	1.73
52908198--52908294	27	3.5	28	73	9	85	51	0	2	46	1.12
52908238--52908280	17	2.6	17	82	10	54	53	0	2	44	1.13
52908220--52908308	33	2.7	36	70	16	93	47	0	3	49	1.18
52908281--52908329	26	2.0	24	84	8	62	46	0	6	46	1.27
52911017--52911093	20	4.0	21	76	21	78	38	22	28	10	1.87
52914893--52914955	24	3.0	20	78	17	81	39	11	12	36	1.79
52915758--52915797	14	2.9	14	88	7	55	30	42	0	27	1.56
52915758--52915805	21	2.3	21	79	13	55	29	43	0	27	1.55
52916177--52916239	20	3.2	20	82	8	83	30	0	0	69	0.88
52916177--52916255	19	4.0	20	76	16	76	30	1	1	67	1.07
52916178--52916255	40	2.0	38	85	5	102	30	1	1	66	1.07
52916199--52916253	28	1.9	29	85	3	76	29	1	1	67	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52922713--52922759	21	2.1	21	84	11	58	23	2	4	70	1.16
52927177--52927237	30	2.0	31	84	6	81	31	13	4	50	1.62
52934406--52934438	17	1.9	17	88	11	50	30	21	0	48	1.50
52935914--52935949	17	2.1	17	100	0	72	44	11	16	27	1.82
52937793--52937843	18	2.9	17	75	16	50	41	0	0	58	0.98
52939296--52939332	20	1.9	18	89	10	56	37	16	21	24	1.93
52948164--52948245	23	3.6	23	79	0	92	19	14	21	43	1.87
52948164--52948255	23	4.0	23	76	0	76	21	14	21	42	1.88
52956370--52956410	22	2.0	20	85	9	55	34	7	17	41	1.77
52956934--52957174	81	3.0	81	82	1	286	9	38	21	30	1.86
52956961--52957174	54	4.0	54	82	1	232	10	37	22	29	1.87
52956930--52957180	27	9.3	27	86	1	207	10	38	21	29	1.87
52963978--52964020	13	3.1	14	84	12	54	60	0	0	39	0.97
52966941--52966972	8	4.0	8	95	0	55	46	0	0	53	1.00
52966948--52967016	9	7.9	9	76	7	54	47	0	2	49	1.16
52966987--52967042	20	2.9	19	78	17	62	39	0	1	58	1.08
52967897--52967960	31	2.2	27	83	10	74	34	1	1	62	1.14
52969628--52969688	11	5.6	11	71	11	54	59	1	1	37	1.17
52969808--52969852	22	2.0	23	91	4	74	37	2	0	60	1.09
52971553--52971606	19	2.8	19	88	0	81	38	7	16	37	1.77
52971813--52971857	23	2.0	23	81	0	54	22	0	15	62	1.33
52978514--52978657	44	3.3	42	65	13	101	24	27	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52978465--52979230	88	8.7	88	88	0	1073	27	27	24	21	1.99
52979218--52979317	44	2.3	44	87	3	139	25	19	25	31	1.98
52979304--52979936	44	14.6	44	69	13	273	30	21	21	26	1.98
52979305--52979760	173	2.6	172	85	3	533	30	21	20	26	1.98
52979352--52979633	84	3.3	84	73	8	289	29	22	21	26	1.99
52979434--52979941	217	2.3	218	85	3	718	29	21	23	25	1.99
52980493--52980550	19	2.7	22	84	10	68	36	8	17	37	1.80
52980734--52980778	23	2.0	23	81	0	54	22	0	15	62	1.33
52985053--52985081	15	1.9	15	100	0	58	55	0	0	44	0.99
52985718--52985762	23	1.9	23	82	13	56	15	8	40	35	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216