genome.fa.s15.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  161  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50538565--50538982	209	2.0	208	96	0	764	33	23	15	27	1.95
50544514--50544563	13	3.7	13	83	5	64	58	12	14	16	1.64
50546087--50546125	14	2.9	14	80	3	53	35	23	10	30	1.88
50546173--50546214	21	2.0	20	86	4	57	16	4	30	47	1.67
50548855--50549388	134	4.0	134	93	0	897	22	22	28	26	1.99
50550426--50550582	63	2.5	63	78	6	149	45	16	22	15	1.85
50558144--50558278	42	3.2	42	74	2	119	45	17	21	15	1.86
50565475--50565536	27	2.2	27	82	8	70	40	6	1	51	1.37
50567642--50567797	61	2.5	61	78	7	163	41	3	16	38	1.66
50577500--50577630	54	2.4	54	82	5	149	23	27	30	18	1.98
50583120--50583188	25	2.6	25	80	11	59	56	0	2	40	1.14
50583148--50583210	27	2.4	27	81	7	67	53	3	1	41	1.26
50589835--50589897	30	2.1	30	90	0	99	26	4	11	57	1.53
50589980--50590019	18	2.2	18	86	8	55	20	0	12	67	1.22
50593839--50593907	37	1.9	37	82	8	90	7	15	5	71	1.29
50602512--50602577	11	5.9	11	80	16	66	42	1	30	25	1.64
50602512--50602576	22	2.9	23	82	15	75	41	1	30	26	1.65
50602526--50602576	11	4.6	11	87	4	68	41	1	33	23	1.66
50605583--50605628	19	2.4	20	85	10	69	36	0	6	56	1.25
50606191--50606252	30	2.1	30	87	0	88	58	12	3	25	1.50
50607283--50607369	45	1.9	45	88	0	129	41	5	3	49	1.43
50617808--50617839	4	8.0	4	100	0	64	50	25	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50623289--50623330	20	2.2	20	82	4	50	57	0	11	30	1.35
50623268--50623473	78	2.6	77	80	4	234	47	9	7	35	1.65
50629375--50629450	23	3.4	22	74	3	73	47	17	5	30	1.69
50631271--50631373	38	2.7	37	86	5	143	33	12	18	35	1.89
50637256--50637318	29	2.2	29	82	5	74	49	0	3	47	1.17
50637279--50637353	23	3.1	23	72	11	62	50	0	1	48	1.09
50637274--50637333	14	4.2	14	72	16	52	48	0	0	51	1.00
50637330--50637367	13	2.7	14	80	12	51	47	0	2	50	1.15
50637376--50637422	17	2.7	18	75	18	55	42	4	2	51	1.33
50637824--50637917	37	2.6	36	84	5	109	20	19	15	44	1.86
50642022--50642410	152	2.6	147	84	6	494	44	8	3	43	1.53
50642269--50642418	53	2.9	52	79	8	144	48	6	4	40	1.50
50646506--50646554	21	2.2	22	82	10	64	26	10	28	34	1.89
50646515--50646560	21	2.2	21	96	0	83	30	10	23	34	1.89
50656289--50656371	36	2.3	36	82	2	94	43	20	2	33	1.65
50656581--50656703	43	2.8	44	80	9	128	30	26	17	25	1.97
50659152--50659196	17	2.8	17	87	9	60	40	0	0	60	0.97
50661655--50661705	25	2.0	25	96	0	93	41	19	5	33	1.76
50667545--50667604	21	2.8	21	82	2	75	33	16	11	38	1.85
50670488--50670537	17	2.9	17	93	0	91	24	26	6	44	1.76
50675026--50675075	17	2.9	17	93	0	91	24	26	6	44	1.76
50675295--50675362	28	2.4	27	76	9	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50675973--50676047	32	2.4	31	82	6	87	62	1	6	29	1.29
50675964--50676024	25	2.5	24	79	10	70	67	1	3	27	1.16
50677762--50677805	21	2.1	21	82	0	52	15	40	20	22	1.90
50703136--50703173	19	2.0	20	84	5	51	36	5	21	36	1.76
50706143--50706172	12	2.6	12	94	5	53	23	6	0	70	1.11
50719849--50719886	14	2.7	15	92	8	62	39	2	15	42	1.61
50719997--50720046	20	2.5	20	83	0	73	42	2	2	54	1.23
50722555--50722580	13	2.0	13	100	0	52	23	30	0	46	1.53
50722867--50722896	15	2.0	15	93	0	51	40	20	16	23	1.91
50723385--50723444	30	2.0	30	100	0	120	36	10	13	40	1.78
50724450--50724519	26	2.7	26	88	0	113	21	28	22	27	1.99
50724531--50724623	48	1.9	48	89	4	143	29	9	22	38	1.86
50728880--50728997	36	3.3	36	81	0	155	44	25	11	17	1.83
50735764--50735837	28	2.7	27	81	6	85	32	8	31	28	1.86
50736659--50736736	39	2.0	39	100	0	156	33	7	12	46	1.71
50736720--50736851	25	5.6	24	70	17	98	27	14	15	43	1.85
50736707--50736823	47	2.5	47	88	0	171	29	12	15	42	1.84
50736709--50736781	22	3.1	23	81	18	105	27	12	13	46	1.79
50747464--50747567	54	1.9	54	82	0	127	21	28	24	25	1.99
50751749--50751787	12	3.3	12	82	7	53	35	0	0	64	0.94
50751904--50751964	30	2.0	30	93	0	104	55	14	3	26	1.55
50757813--50757846	17	2.0	17	88	0	50	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50760413--50760445	2	16.5	2	100	0	66	48	0	51	0	1.00
50762893--50762942	21	2.4	21	89	0	73	22	36	22	20	1.96
50777694--50777718	10	2.5	10	100	0	50	40	8	0	52	1.31
50778703--50778744	5	7.8	5	97	2	57	76	0	7	16	1.00
50778703--50778751	11	4.5	11	89	7	64	75	2	6	16	1.09
50778703--50778763	16	3.6	16	84	13	61	75	1	4	18	1.06
50778703--50778762	12	5.4	11	86	8	59	75	1	5	18	1.07
50782940--50783134	43	4.5	43	78	5	214	32	21	17	28	1.96
50784688--50784743	27	2.0	29	83	13	73	69	3	16	10	1.30
50789872--50789915	23	1.9	23	81	9	54	59	4	6	29	1.44
50798499--50798627	59	2.2	59	85	5	170	34	3	6	54	1.46
50799754--50799838	43	2.0	42	90	2	134	24	21	1	52	1.53
50806489--50806973	126	3.9	126	83	1	598	27	16	15	40	1.88
50806489--50806973	251	1.9	251	84	4	647	27	16	15	40	1.88
50812705--50812745	18	2.3	18	100	0	82	60	12	0	26	1.31
50813793--50813836	17	2.6	17	88	0	61	45	4	2	47	1.35
50825169--50825255	3	29.0	3	88	0	66	34	10	1	54	1.42
50834215--50834241	6	4.5	6	100	0	54	48	0	0	51	1.00
50834327--50834369	17	2.7	15	82	17	52	30	37	30	2	1.70
50837549--50837611	25	2.5	24	75	10	63	53	9	1	34	1.43
50842183--50842209	7	3.9	7	100	0	54	40	0	0	59	0.98
50845760--50845816	27	2.2	25	75	9	62	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50845795--50845838	19	2.3	19	88	4	61	61	0	0	38	0.96
50845802--50845843	19	2.2	19	83	8	50	64	0	0	35	0.94
50846098--50846135	20	2.0	20	84	5	51	42	2	2	52	1.29
50846496--50846538	8	5.1	8	83	8	50	6	30	0	62	1.21
50846502--50846538	17	2.2	17	100	0	74	5	27	0	67	1.12
50848598--50848625	14	2.0	14	100	0	56	42	7	14	35	1.73
50853685--50853901	108	2.0	108	93	1	373	37	29	15	17	1.90
50862647--50862673	4	6.8	4	100	0	54	77	0	0	22	0.76
50865096--50865125	11	2.7	11	100	0	60	66	0	0	33	0.92
50866625--50866655	6	5.0	6	96	4	53	19	0	0	80	0.71
50867065--50867390	132	2.5	132	85	5	428	25	23	20	30	1.98
50869202--50869232	6	5.0	6	96	4	53	19	0	0	80	0.71
50869642--50869967	132	2.5	132	85	5	401	24	23	20	30	1.98
50878530--50878626	24	4.0	25	74	6	65	21	22	21	34	1.97
50878615--50878681	25	2.7	25	79	4	73	26	23	14	34	1.94
50881071--50881108	17	2.2	17	100	0	76	39	13	5	42	1.66
50888528--50888589	31	2.0	31	100	0	124	32	9	16	41	1.80
50889106--50889178	32	2.3	33	83	4	96	71	19	9	0	1.13
50889105--50889180	33	2.3	32	80	6	91	71	18	10	0	1.14
50894720--50894781	31	2.0	31	100	0	124	32	9	16	41	1.80
50896444--50896483	21	1.9	21	100	0	80	42	15	25	17	1.88
50899092--50899145	27	2.0	27	100	0	108	22	14	29	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50903018--50903064	17	3.0	15	77	17	51	68	0	2	29	1.02
50903019--50903052	17	1.9	18	94	5	61	70	0	0	29	0.87
50913716--50913880	55	3.0	56	87	4	228	33	16	15	34	1.90
50913725--50913911	55	3.3	55	84	5	180	32	18	14	34	1.91
50924878--50924969	23	3.9	24	80	9	100	23	22	20	32	1.98
50925118--50925167	20	2.5	20	80	6	57	36	6	22	36	1.79
50925778--50925877	11	9.4	11	69	17	59	43	3	30	24	1.69
50925754--50925853	51	2.0	51	88	4	148	45	2	27	26	1.65
50926705--50926735	16	1.9	16	93	0	53	87	0	12	0	0.55
50926917--50926966	20	2.7	17	84	12	55	60	2	0	38	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216