genome.fa.s15.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  111  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35300785--35300810	12	2.2	12	100	0	52	26	7	23	42	1.81
35302192--35302262	30	2.4	30	85	0	97	36	28	19	15	1.92
35305126--35305237	58	1.9	58	92	3	190	27	17	9	44	1.80
35305132--35305254	58	2.1	57	89	1	183	29	16	10	43	1.81
35311048--35311170	57	2.2	58	86	7	180	47	4	19	27	1.69
35314056--35314141	42	2.0	43	86	6	122	32	13	9	44	1.76
35324075--35324147	23	3.2	23	63	18	62	38	13	0	47	1.43
35324070--35324158	45	2.0	45	97	0	169	40	14	0	44	1.45
35324085--35324156	19	3.2	23	65	31	64	41	15	0	43	1.46
35324164--35324213	15	3.1	15	80	8	55	44	2	10	44	1.49
35324184--35324219	18	2.0	18	88	0	54	47	0	11	41	1.39
35324473--35324508	17	2.0	18	89	10	56	5	5	22	66	1.34
35324511--35324571	27	2.3	27	94	0	104	47	0	9	42	1.36
35328818--35328876	29	2.0	31	83	6	77	42	16	13	27	1.86
35328867--35328945	31	2.6	30	82	7	90	44	17	16	21	1.87
35329033--35329075	19	2.3	19	95	0	77	46	16	9	27	1.77
35334343--35334386	23	2.0	22	82	13	54	27	4	18	50	1.66
35343335--35343367	16	2.1	16	100	0	66	18	33	6	42	1.75
35351365--35351489	45	2.8	45	88	0	187	27	20	9	42	1.83
35351410--35351477	22	3.0	22	68	19	59	29	22	8	39	1.84
35351370--35351485	23	5.1	23	65	19	64	26	21	9	42	1.83
35351381--35351450	22	3.2	21	66	18	52	27	17	10	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35354775--35355482	353	2.0	354	93	0	1220	33	12	24	30	1.92
35363590--35363636	24	1.9	25	83	12	62	48	2	10	38	1.50
35375157--35375382	27	8.4	27	85	0	274	35	19	20	24	1.95
35375630--35375760	32	4.1	32	83	0	181	19	21	21	37	1.95
35375631--35375757	64	2.0	64	90	0	200	20	22	21	36	1.95
35376979--35377155	25	7.2	25	74	12	150	17	26	21	34	1.95
35376985--35377155	49	3.4	49	78	15	156	18	26	21	33	1.96
35376979--35377167	74	2.5	74	77	9	188	17	26	22	33	1.96
35379299--35379351	13	4.2	13	81	11	65	67	0	1	30	1.01
35384383--35384425	18	2.4	18	84	0	59	4	27	0	67	1.10
35396580--35396626	24	1.9	25	82	4	60	51	10	4	34	1.56
35396662--35396699	18	2.2	18	85	4	51	71	2	23	2	1.12
35396755--35396807	26	2.1	25	82	10	63	33	1	1	62	1.17
35399585--35399811	89	2.5	89	82	10	291	38	21	8	31	1.84
35399929--35400005	27	2.8	28	78	4	75	63	1	3	31	1.20
35401702--35401910	87	2.4	85	82	8	262	32	7	19	41	1.78
35403074--35403120	24	1.9	25	86	4	69	34	2	6	57	1.36
35404949--35405116	27	6.2	27	81	4	106	29	19	11	39	1.87
35404949--35405170	54	4.1	54	84	1	248	28	20	12	38	1.88
35404974--35405170	81	2.4	81	79	5	218	27	20	12	39	1.89
35404989--35405171	27	6.8	28	74	15	127	27	20	13	38	1.90
35411227--35411355	37	3.5	37	91	3	199	33	3	13	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35411252--35411349	17	5.4	17	64	13	52	34	3	13	48	1.57
35411356--35411425	9	7.6	9	85	6	95	27	10	27	35	1.88
35412419--35412459	20	2.0	20	85	9	55	39	7	4	48	1.52
35412605--35412679	19	4.0	18	81	8	96	57	22	5	14	1.58
35412605--35412677	38	1.9	38	88	0	110	56	23	5	15	1.60
35428527--35428578	24	2.2	24	89	0	77	55	9	1	32	1.43
35430497--35430548	24	2.2	24	89	0	77	55	9	1	32	1.43
35430983--35431017	18	1.9	18	88	0	52	2	2	22	71	1.13
35439869--35440014	50	2.9	50	80	2	141	30	13	25	30	1.93
35442048--35442103	28	2.0	28	92	0	94	17	25	3	53	1.60
35451516--35451558	20	2.2	20	88	8	63	62	2	4	30	1.28
35451515--35451551	20	1.9	20	94	5	67	62	0	5	32	1.18
35457403--35457460	23	2.5	24	81	13	68	55	1	0	43	1.10
35457649--35457814	71	2.3	70	83	8	201	47	6	9	37	1.60
35457957--35458098	56	2.5	57	80	7	146	56	7	3	33	1.43
35460532--35460576	22	2.0	23	86	4	65	24	4	6	64	1.37
35465142--35465197	22	2.6	23	86	8	73	10	17	7	64	1.47
35466900--35466941	17	2.2	20	88	12	63	33	4	2	59	1.31
35470054--35470139	41	2.1	42	82	10	106	31	12	4	51	1.60
35471899--35471944	22	2.0	23	84	12	60	23	28	13	34	1.92
35473473--35473533	21	2.9	22	74	13	65	19	22	39	18	1.92
35474562--35474595	10	3.4	10	91	0	50	26	2	5	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35477418--35477613	51	3.9	51	79	4	209	24	17	27	30	1.97
35477422--35477606	101	1.8	102	89	5	295	24	17	26	31	1.97
35477597--35477688	45	2.1	42	80	11	98	27	15	22	34	1.94
35477610--35477704	45	2.1	45	88	0	145	27	17	23	31	1.97
35480874--35480921	19	2.6	18	77	9	51	35	0	2	62	1.07
35482181--35482211	2	15.5	2	100	0	62	48	0	0	51	1.00
35485282--35485345	18	3.6	18	75	8	67	48	6	29	15	1.70
35490765--35490790	13	2.0	13	100	0	52	46	15	7	30	1.74
35493833--35494153	161	2.0	162	90	3	504	33	14	11	40	1.82
35494054--35494221	74	2.3	74	84	7	216	38	11	12	38	1.79
35505148--35505305	31	5.1	31	82	3	185	43	15	10	30	1.81
35505149--35505321	61	2.8	61	81	5	188	44	15	9	30	1.79
35505130--35505316	31	6.0	31	77	5	164	44	15	10	29	1.79
35510627--35510735	23	5.0	23	80	10	113	36	22	20	21	1.95
35511790--35511821	10	3.4	10	83	16	50	53	0	0	46	1.00
35511784--35511821	18	2.1	19	95	5	69	55	0	0	44	0.99
35511978--35512014	16	2.3	17	81	13	51	48	0	0	51	1.00
35515514--35515671	31	5.1	30	78	4	136	43	15	10	30	1.80
35515496--35515605	30	3.5	30	80	5	121	41	14	10	32	1.81
35515496--35515672	61	2.9	61	81	4	167	44	15	10	30	1.79
35515624--35515692	31	2.2	31	82	5	77	49	11	8	30	1.69
35520546--35520590	22	2.0	22	84	16	58	22	4	2	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35532651--35532699	25	2.0	25	83	0	62	40	2	0	57	1.10
35563462--35563498	19	1.9	19	94	0	65	40	5	8	45	1.56
35567720--35567776	20	2.8	21	89	10	84	29	5	0	64	1.15
35567795--35567830	5	7.2	5	93	0	63	2	38	58	0	1.13
35568132--35568190	18	3.2	18	76	7	64	35	3	3	57	1.32
35568207--35568245	19	2.0	20	85	14	55	41	0	2	56	1.13
35568165--35568233	19	3.7	19	69	18	63	40	0	4	55	1.20
35570444--35570479	3	12.0	3	93	0	63	66	2	0	30	1.06
35570493--35570541	4	12.2	4	77	0	53	46	8	20	24	1.77
35570493--35570533	8	5.1	8	96	0	73	48	9	17	24	1.76
35576129--35576167	18	2.2	17	86	13	53	46	20	0	33	1.51
35583169--35583267	23	4.3	23	86	0	135	30	22	22	25	1.99
35589872--35590185	156	2.0	155	95	2	567	42	8	7	41	1.63
35590315--35590351	5	7.4	5	100	0	74	40	59	0	0	0.97
35615108--35615149	21	2.0	21	81	9	50	35	26	9	28	1.88
35624371--35624417	7	6.6	7	76	13	51	12	2	4	80	0.94
35624379--35624424	14	3.2	14	87	6	65	10	0	8	80	0.91
35624383--35624443	25	2.3	26	81	10	63	13	1	6	78	1.01
35624547--35624577	15	2.1	15	93	0	53	16	0	16	67	1.23
35631757--35631801	23	2.0	23	100	0	90	31	13	4	51	1.61
35633210--35633263	21	2.6	19	77	11	54	37	3	7	51	1.48
35633751--35633780	16	1.9	16	93	6	53	36	0	13	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35638466--35638514	26	1.9	26	88	12	75	16	14	8	61	1.56
35639384--35642614	44	72.8	44	75	6	2273	28	14	25	30	1.95
35639384--35642852	265	13.1	266	81	5	2948	28	14	25	30	1.95
35639384--35642858	309	11.2	310	81	6	2774	28	14	25	30	1.95
35641003--35641039	14	2.6	14	100	0	74	48	8	27	16	1.74
35642492--35642733	119	2.0	118	94	0	421	26	16	26	30	1.97
35642610--35642782	44	3.9	44	79	8	199	27	15	26	30	1.96
35642610--35642843	88	2.6	88	89	2	326	29	14	25	30	1.95
35642401--35642821	207	2.0	207	86	0	574	27	15	26	30	1.96
35642403--35642777	119	3.0	119	75	9	360	26	16	26	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216