genome.fa.s15.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  139  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44109673--44109707	17	2.1	17	100	0	70	48	22	11	17	1.79
44117565--44117749	40	4.7	40	80	7	200	23	23	28	24	2.00
44117618--44117782	79	2.1	79	82	6	192	25	21	27	24	1.99
44132781--44132826	21	2.1	23	84	15	62	32	4	4	58	1.37
44133977--44134004	6	4.7	6	100	0	56	32	50	0	17	1.47
44142298--44142662	102	3.6	103	94	2	605	30	29	20	19	1.97
44142534--44142585	26	2.0	26	96	0	95	28	34	23	13	1.92
44142991--44143054	30	2.2	29	81	10	76	29	28	6	35	1.82
44142998--44143054	30	1.9	30	85	3	80	29	24	7	38	1.82
44149970--44150021	26	2.0	26	96	0	95	28	34	23	13	1.92
44149834--44150198	104	3.6	104	93	3	584	30	29	19	20	1.97
44150077--44150125	25	2.0	25	95	0	89	30	34	20	14	1.92
44150526--44150589	30	2.2	29	81	10	76	29	28	6	35	1.82
44150533--44150589	30	1.9	30	85	3	80	29	24	7	38	1.82
44163851--44163929	37	2.1	37	88	4	115	25	31	18	24	1.98
44164048--44164677	47	13.4	47	93	0	1035	28	29	8	32	1.88
44167671--44167751	38	2.1	38	84	4	101	48	3	1	46	1.27
44169686--44169724	20	1.9	21	84	5	53	25	0	28	46	1.53
44171232--44171267	14	2.3	17	86	13	51	38	0	27	33	1.57
44171318--44171598	43	6.5	43	79	1	213	22	15	23	38	1.92
44171328--44171598	86	3.2	86	83	1	301	22	15	23	38	1.93
44171361--44171597	129	1.8	129	81	3	298	21	15	24	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44173871--44174059	27	7.0	27	84	8	181	41	21	14	22	1.89
44173871--44174059	81	2.3	81	81	5	229	41	21	14	22	1.89
44173871--44174049	54	3.3	53	80	7	200	41	22	13	22	1.88
44190545--44190597	24	2.2	24	82	0	70	50	32	1	15	1.54
44194490--44195278	27	29.3	27	81	5	785	42	20	16	19	1.89
44195691--44195898	28	7.5	28	85	5	289	22	22	25	30	1.99
44204922--44204951	15	1.9	16	93	6	53	43	0	0	56	0.99
44205707--44205765	25	2.4	25	78	13	68	33	5	1	59	1.29
44233943--44234003	27	2.3	27	82	5	70	22	16	24	36	1.94
44242192--44242231	17	2.4	17	87	8	55	62	5	2	30	1.29
44242212--44242549	100	3.3	100	88	2	480	54	14	0	30	1.46
44242353--44242682	100	3.5	91	78	15	325	53	14	0	30	1.48
44242541--44242786	92	2.6	95	84	5	286	54	14	0	30	1.46
44242329--44242835	100	5.4	93	75	10	258	55	14	0	29	1.44
44242938--44242963	3	8.7	3	100	0	52	0	30	0	69	0.89
44243021--44243068	25	1.9	25	86	0	69	62	0	0	37	0.95
44245388--44245475	44	2.0	44	86	0	122	39	11	3	45	1.57
44248353--44248377	13	1.9	13	100	0	50	32	12	16	40	1.84
44253201--44253470	89	3.0	89	96	0	477	34	16	12	35	1.87
44253582--44253658	10	8.0	10	74	8	52	67	2	2	27	1.17
44253575--44253656	28	2.9	28	78	9	85	65	3	2	28	1.22
44253582--44253656	19	3.9	19	74	19	75	66	2	2	28	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44254235--44254279	20	2.1	21	84	8	56	42	2	2	53	1.25
44254835--44254881	11	4.2	11	91	2	76	17	34	0	48	1.47
44254847--44254893	22	2.1	22	84	7	60	21	34	0	44	1.52
44254861--44254984	51	2.4	51	86	2	178	30	25	0	42	1.61
44256097--44256128	7	4.6	7	96	0	55	25	0	12	62	1.30
44256100--44256134	14	2.5	13	86	13	52	25	0	14	60	1.35
44256780--44256814	18	1.9	18	88	0	52	25	34	8	31	1.86
44257216--44257329	25	4.7	25	67	20	89	38	2	14	43	1.60
44257322--44257364	23	1.9	23	90	4	61	51	20	0	27	1.48
44257329--44258004	29	23.4	29	92	1	1063	48	30	0	20	1.51
44261128--44261477	124	2.8	124	92	0	558	32	20	16	30	1.95
44264676--44264704	12	2.3	13	94	5	51	34	10	0	55	1.34
44268447--44268492	19	2.4	18	82	10	56	23	23	13	39	1.90
44277761--44277789	12	2.3	13	94	5	51	34	10	0	55	1.34
44282040--44282145	37	2.9	37	90	2	160	22	11	26	39	1.88
44282040--44282162	37	3.3	37	86	2	149	21	11	28	39	1.88
44283172--44283276	48	2.2	49	87	1	158	21	27	20	29	1.98
44296812--44296858	19	2.5	19	77	16	53	70	2	21	6	1.20
44301938--44302024	29	3.0	29	81	1	93	41	20	14	22	1.89
44303325--44303364	20	2.0	20	90	4	64	37	12	12	37	1.81
44303802--44303897	37	2.6	36	78	14	99	45	1	2	51	1.20
44303802--44303881	37	2.2	38	84	8	103	48	0	2	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44307217--44307251	15	2.2	16	90	5	54	57	2	0	40	1.14
44307229--44307254	13	2.0	13	100	0	52	53	7	0	38	1.30
44307263--44307319	15	3.5	15	71	17	51	50	1	1	45	1.22
44316501--44316550	20	2.5	20	93	0	82	22	22	26	30	1.99
44321400--44321686	51	5.7	50	80	4	308	29	25	15	29	1.96
44321398--44321686	102	2.9	101	86	2	366	29	25	15	29	1.96
44324551--44324625	23	3.3	23	92	0	123	34	25	20	20	1.96
44324852--44324890	18	2.2	17	86	13	53	46	20	0	33	1.51
44330986--44331048	23	2.7	22	79	13	56	14	9	0	76	1.02
44331508--44331533	3	8.7	3	100	0	52	69	0	0	30	0.89
44332999--44333063	27	2.5	26	83	11	89	66	0	1	32	1.01
44332989--44333053	33	1.9	34	87	3	96	64	1	3	30	1.18
44334489--44335169	50	13.6	50	68	3	411	21	25	23	29	1.99
44334477--44335203	100	7.3	100	88	0	1042	22	26	23	28	1.99
44336548--44336580	15	2.2	15	94	0	57	0	21	0	78	0.75
44339736--44339770	16	2.2	16	89	0	52	42	20	14	22	1.88
44341365--44341437	34	2.1	36	84	5	96	63	1	2	32	1.17
44354735--44354770	12	3.0	12	91	0	54	33	5	2	58	1.36
44354908--44354940	17	1.9	17	100	0	66	30	3	0	66	1.06
44355618--44355662	22	2.0	22	83	8	56	53	15	0	31	1.43
44361515--44362239	45	16.1	45	89	0	993	28	16	25	30	1.96
44365114--44365429	101	3.2	101	88	6	502	31	13	23	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44365891--44365928	13	2.8	14	84	4	51	44	0	13	42	1.43
44366078--44366836	44	17.0	44	73	10	416	31	19	20	28	1.97
44366092--44366531	182	2.4	182	78	5	414	30	18	22	28	1.97
44366546--44366657	40	2.8	40	81	1	125	28	20	20	30	1.98
44366620--44366903	134	2.1	134	89	3	446	33	20	17	28	1.96
44366668--44366839	90	1.9	90	82	7	215	33	20	18	27	1.96
44367152--44367367	44	4.8	44	73	11	150	29	18	22	28	1.98
44367161--44367372	88	2.3	95	80	7	233	28	18	24	28	1.98
44368477--44368559	36	2.3	36	100	0	166	27	30	20	21	1.98
44368916--44368946	12	2.6	12	94	0	53	29	6	3	61	1.37
44369080--44369112	17	1.9	17	93	0	57	27	3	0	69	1.03
44371428--44371549	65	1.9	63	83	6	156	25	4	15	54	1.61
44372881--44372915	12	3.0	11	91	8	52	77	0	22	0	0.78
44373316--44373340	11	2.3	11	100	0	50	52	0	20	28	1.47
44374090--44374236	21	6.4	23	69	22	105	21	19	19	39	1.93
44374175--44374231	23	2.6	21	81	10	69	19	24	19	36	1.94
44374090--44374261	92	1.9	92	85	0	236	22	19	19	39	1.92
44379514--44379665	74	2.1	74	100	0	304	47	10	23	18	1.79
44387835--44387958	58	2.1	58	86	2	169	46	0	3	49	1.23
44388138--44388193	16	3.5	16	77	0	67	30	19	5	44	1.73
44392311--44392386	23	3.3	23	83	7	109	25	19	23	31	1.98
44394630--44394836	99	2.1	99	97	0	387	30	13	20	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44402609--44402736	40	3.3	40	69	14	115	25	26	28	20	1.99
44402604--44402771	75	2.2	75	87	0	237	24	25	27	22	2.00
44407237--44407276	21	1.9	21	84	0	53	47	22	15	15	1.82
44407272--44407340	21	3.3	21	64	9	52	46	17	20	15	1.84
44407234--44407354	42	2.9	41	85	4	152	46	19	20	14	1.84
44409068--44409124	30	1.9	30	85	7	80	26	17	26	29	1.97
44415833--44415874	19	2.2	20	95	4	77	7	14	0	78	0.95
44425029--44425207	88	2.0	86	92	3	259	38	8	16	36	1.80
44425590--44425615	5	5.2	5	100	0	52	80	19	0	0	0.71
44425920--44425958	20	1.9	21	85	15	55	41	5	12	41	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216