genome.fa.s15.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  169  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53195352--53195494	63	2.3	63	81	2	162	27	27	19	25	1.99
53196836--53197011	39	4.5	39	79	3	176	40	21	6	31	1.78
53198979--53199045	27	2.4	27	80	16	75	64	2	2	29	1.23
53200358--53200912	278	2.0	276	98	0	1074	28	10	20	40	1.85
53201666--53201731	33	2.0	33	96	0	123	18	25	27	28	1.98
53204868--53204901	16	2.1	17	88	5	52	38	5	20	35	1.77
53212211--53212244	6	5.7	6	92	0	59	52	2	26	17	1.58
53212388--53212449	27	2.3	26	83	8	81	43	12	11	32	1.79
53215707--53215740	16	2.1	17	88	5	52	11	0	11	76	1.02
53231295--53231423	48	2.7	49	78	10	140	32	18	27	21	1.97
53231343--53231423	24	3.4	24	70	13	69	33	19	28	18	1.96
53231465--53231534	26	2.7	26	82	2	79	37	24	22	15	1.93
53235171--53235216	6	7.5	6	92	2	74	67	0	17	15	1.24
53235755--53235804	18	2.7	18	80	19	59	38	0	0	62	0.96
53235723--53235804	21	4.2	19	70	21	62	32	2	1	63	1.15
53252147--53252205	26	2.5	24	89	10	86	45	22	16	15	1.84
53259398--53259467	30	2.5	27	82	13	95	28	17	17	37	1.92
53259410--53259471	30	2.1	30	100	0	124	25	17	16	40	1.90
53259464--53259548	27	3.1	27	89	0	125	22	14	21	42	1.88
53263136--53263184	6	7.8	6	88	2	62	18	18	0	63	1.32
53263933--53263973	19	2.2	19	95	0	73	41	14	14	29	1.86
53264169--53264195	12	2.2	12	100	0	54	44	25	14	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53265507--53265534	14	2.0	14	100	0	56	28	7	28	35	1.84
53269240--53269275	18	2.0	18	94	0	63	27	11	30	30	1.91
53281527--53281609	25	3.3	25	75	9	80	25	18	26	30	1.98
53285841--53285865	13	1.9	13	100	0	50	56	20	24	0	1.43
53289508--53290106	44	13.8	43	73	9	380	26	20	21	31	1.98
53289522--53290109	129	4.5	129	85	1	730	26	20	21	31	1.98
53290192--53290573	50	7.7	49	71	5	239	25	23	23	27	2.00
53290162--53290576	100	4.1	101	87	2	579	25	23	22	28	1.99
53292847--53293109	42	7.3	33	74	19	124	31	27	20	20	1.97
53292976--53293079	42	2.5	42	98	0	199	31	27	17	23	1.97
53292874--53293143	144	1.9	144	92	0	461	30	28	20	21	1.98
53294625--53294675	19	2.7	18	81	6	57	5	7	3	82	0.94
53294633--53294675	18	2.3	18	84	4	50	6	6	4	81	0.98
53294654--53294692	8	4.8	8	87	3	51	5	12	7	74	1.20
53303760--53303849	25	3.6	25	83	5	110	27	22	25	24	2.00
53303777--53303859	25	3.3	25	83	9	107	31	22	25	20	1.98
53307198--53307237	14	2.9	15	78	14	50	50	15	0	35	1.44
53307380--53307410	7	4.3	7	95	4	53	74	0	0	25	0.82
53307744--53307771	7	4.0	7	100	0	56	14	14	71	0	1.15
53316811--53316851	20	2.0	20	86	9	57	73	0	0	26	0.84
53327249--53327288	22	2.0	20	85	14	55	37	0	2	60	1.11
53328685--53328718	3	11.7	3	93	6	61	64	0	35	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53330051--53330094	19	2.5	17	86	13	70	40	9	18	31	1.81
53330053--53330110	19	2.7	22	84	10	68	36	8	17	37	1.80
53331824--53331894	3	23.3	3	73	13	56	28	5	2	63	1.31
53337203--53337285	41	2.0	41	100	0	166	22	19	26	31	1.98
53346681--53346736	27	2.1	27	96	0	103	53	12	7	26	1.64
53350389--53350421	16	2.1	16	94	0	57	39	12	9	39	1.74
53352463--53352531	33	2.1	33	97	0	129	26	24	5	43	1.76
53353710--53353767	29	2.0	29	90	6	91	32	18	3	44	1.67
53356170--53356328	81	2.0	81	90	3	250	0	33	0	66	0.97
53356176--53356313	45	3.2	46	80	14	134	0	30	0	68	0.94
53356143--53356330	81	2.5	74	83	13	247	0	32	0	67	0.95
53356282--53356368	45	1.9	46	83	6	115	1	40	0	58	1.05
53356282--53356368	22	3.8	22	87	4	111	1	40	0	58	1.05
53356398--53356468	27	2.6	27	90	0	115	15	28	28	28	1.96
53356521--53356592	30	2.5	30	91	6	114	45	0	9	44	1.36
53357363--53357422	6	10.2	6	94	3	95	66	18	13	1	1.32
53357488--53357515	14	2.0	14	100	0	56	64	0	28	7	1.20
53357491--53357535	19	2.5	18	82	17	58	66	0	26	6	1.16
53361250--53361326	29	2.6	29	83	4	91	48	15	12	23	1.80
53361469--53361542	29	2.5	29	86	4	94	50	14	13	21	1.78
53361785--53361905	58	2.0	60	81	6	140	27	12	20	39	1.88
53383211--53383341	68	1.9	68	98	0	253	52	9	9	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53383221--53383327	34	3.1	34	61	10	83	50	10	9	29	1.68
53383454--53383503	24	2.0	25	85	11	68	72	2	0	26	0.96
53383456--53383503	25	1.9	25	87	8	71	75	2	0	22	0.91
53385370--53385418	26	1.9	26	83	4	64	63	2	14	20	1.40
53387090--53387123	17	2.1	16	88	5	50	52	5	17	23	1.66
53389221--53389298	24	3.2	23	77	10	68	20	29	16	33	1.95
53389231--53389313	24	3.4	24	72	18	64	19	30	19	31	1.96
53389376--53389447	25	2.8	26	77	6	76	16	27	22	33	1.95
53389359--53389444	26	3.4	25	79	6	84	17	26	20	34	1.95
53391914--53392037	33	3.9	34	75	11	86	38	12	26	22	1.89
53391957--53392044	28	3.0	28	74	14	79	39	11	25	23	1.88
53392729--53392764	18	2.0	18	88	0	54	44	22	5	27	1.75
53392936--53393016	37	2.2	37	97	2	153	34	28	6	30	1.82
53395452--53395539	41	2.2	40	81	4	104	57	4	4	32	1.39
53404524--53404605	43	1.9	43	82	5	103	18	21	28	31	1.97
53408318--53408501	21	8.8	21	69	1	118	15	20	17	46	1.84
53408311--53408501	42	4.5	42	91	0	292	15	20	17	46	1.84
53413035--53413094	26	2.3	26	88	5	86	30	10	13	46	1.75
53419724--53419752	14	2.1	14	93	6	51	6	6	17	68	1.34
53421994--53422044	10	4.8	11	80	7	61	7	15	15	60	1.56
53421990--53422044	21	2.6	21	97	0	101	9	14	14	61	1.55
53427132--53427188	24	2.4	24	93	0	96	38	5	7	49	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53431410--53431455	23	2.0	23	86	0	65	32	4	10	52	1.56
53431426--53431470	24	1.9	23	82	13	56	37	6	8	46	1.61
53439602--53439638	9	4.1	9	86	13	58	32	10	10	45	1.74
53439805--53439855	25	2.1	24	82	10	59	3	25	0	70	1.04
53441313--53441342	15	2.0	15	100	0	60	80	0	0	20	0.72
53441340--53441380	21	1.9	22	90	5	66	36	0	0	63	0.95
53443863--53443928	3	22.0	3	96	0	123	1	33	0	65	1.02
53447288--53447355	19	3.5	19	78	11	75	36	8	14	39	1.78
53447288--53447347	21	3.0	21	80	9	63	38	8	15	38	1.77
53447347--53447391	23	2.0	23	82	4	56	31	4	17	46	1.68
53451158--53451244	20	4.6	19	73	17	74	48	5	3	42	1.44
53467928--53467957	7	4.3	7	95	0	51	26	0	56	16	1.40
53469558--53469590	12	2.8	12	86	13	50	54	0	0	45	0.99
53469621--53469672	20	2.8	18	78	21	63	51	3	1	42	1.31
53474962--53475065	51	2.0	52	94	1	183	41	2	19	36	1.66
53483492--53483562	25	2.8	26	86	4	99	38	11	16	33	1.85
53509420--53509461	20	2.1	20	100	0	84	26	23	9	40	1.85
53513775--53513998	40	5.7	40	85	5	260	25	28	21	24	1.99
53513775--53513998	79	2.8	80	84	8	287	25	28	21	24	1.99
53513775--53513998	118	1.9	120	83	7	296	25	28	21	24	1.99
53515779--53515838	29	2.0	31	80	6	70	55	8	23	13	1.65
53516984--53517008	10	2.5	10	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53517291--53517338	19	2.5	19	100	0	96	16	33	31	18	1.94
53517330--53517447	30	3.9	30	85	0	146	22	36	28	12	1.91
53525275--53525303	3	9.7	3	100	0	58	68	0	0	31	0.89
53528515--53528557	22	2.0	22	85	0	59	30	0	4	65	1.13
53529634--53529658	13	1.9	13	100	0	50	56	8	0	36	1.29
53530478--53530511	17	2.0	17	94	0	59	20	23	32	23	1.98
53534536--53534740	104	2.0	104	94	0	356	27	26	17	27	1.98
53537802--53537848	21	2.5	20	80	16	55	63	0	2	34	1.06
53541432--53541461	15	2.0	15	100	0	60	80	0	20	0	0.72
53542848--53542872	7	3.6	7	100	0	50	0	40	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216