genome.fa.s15.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  115  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36661558--36661591	6	5.7	6	92	0	50	17	23	0	58	1.38
36661558--36661592	18	1.9	18	94	0	61	17	22	0	60	1.37
36665518--36665557	20	2.0	20	100	0	80	50	10	15	25	1.74
36672044--36672113	27	2.6	27	95	2	113	31	28	12	27	1.93
36672044--36672141	28	3.5	28	90	2	135	31	28	13	26	1.94
36673890--36673937	24	2.0	24	84	8	62	45	0	14	39	1.45
36693366--36693465	39	2.6	40	87	4	143	38	3	9	50	1.49
36707676--36707877	50	4.0	50	87	7	264	25	22	30	21	1.98
36708533--36708909	29	13.0	29	83	1	371	37	21	15	26	1.93
36710610--36710658	18	2.6	18	83	6	62	48	2	4	44	1.33
36721835--36721882	18	2.6	18	86	3	60	58	0	0	41	0.98
36722488--36722517	14	2.1	14	93	0	51	16	43	0	40	1.48
36729636--36729682	19	2.4	20	92	7	87	48	14	10	25	1.76
36736541--36736583	9	4.7	9	86	13	61	53	0	11	34	1.37
36736541--36736583	19	2.3	18	88	11	61	53	0	11	34	1.37
36747097--36747151	20	2.8	20	77	0	56	12	34	21	30	1.91
36757077--36757132	20	2.8	20	91	0	94	42	14	30	12	1.82
36757805--36757840	17	2.1	17	90	10	56	41	16	0	41	1.48
36763283--36763586	47	6.4	47	90	3	407	33	9	29	26	1.88
36763437--36763558	22	5.3	22	62	21	61	33	11	29	25	1.91
36781200--36781224	12	2.1	12	100	0	50	48	0	28	24	1.52
36789457--36789587	59	2.3	58	85	6	187	41	15	13	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36790333--36790359	8	3.4	8	100	0	54	11	11	11	66	1.45
36800662--36800698	17	2.2	17	95	0	65	21	18	8	51	1.72
36802879--36802935	24	2.4	24	84	0	87	33	24	10	31	1.89
36806980--36807029	15	3.4	15	75	22	52	40	2	12	46	1.52
36807173--36807355	78	2.4	76	76	10	185	36	4	17	42	1.69
36810048--36810696	47	13.6	47	93	1	947	33	8	29	29	1.86
36810048--36810696	49	13.6	49	93	2	1024	33	8	29	29	1.86
36810048--36810696	290	2.3	290	95	2	1152	33	8	29	29	1.86
36812412--36812656	41	6.0	41	86	1	330	28	20	27	24	1.99
36812412--36812656	123	2.0	124	88	5	372	28	20	27	24	1.99
36820811--36820852	21	2.0	21	100	0	84	38	23	9	28	1.86
36836192--36836265	20	3.8	19	78	3	76	43	18	29	8	1.79
36836192--36836268	39	2.0	39	84	0	100	44	18	28	9	1.80
36836939--36836974	17	2.1	17	90	10	56	41	16	0	41	1.48
36849969--36849993	12	2.1	12	100	0	50	48	0	28	24	1.52
36858445--36858588	59	2.4	60	87	1	218	44	15	12	27	1.83
36858451--36858541	28	3.1	30	71	15	89	40	15	13	30	1.85
36859319--36859345	8	3.4	8	100	0	54	11	11	11	66	1.45
36861211--36861275	28	2.3	28	100	0	130	32	20	23	24	1.98
36869639--36869675	17	2.2	17	90	0	56	24	18	5	51	1.67
36871866--36871922	24	2.4	24	84	0	87	33	24	10	31	1.89
36876792--36877036	41	6.0	41	86	1	330	27	19	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36876794--36877026	123	1.9	123	91	3	380	27	19	27	24	1.99
36881706--36881796	25	3.5	26	83	5	114	24	25	23	27	2.00
36881725--36881796	25	2.9	25	87	0	117	26	25	20	27	1.99
36884324--36884420	50	2.0	48	83	4	122	45	16	7	30	1.74
36884594--36884687	34	2.9	32	79	6	107	42	14	9	32	1.79
36885323--36885490	76	2.2	78	82	7	200	40	17	3	38	1.67
36885593--36885649	25	2.3	25	96	0	105	47	10	5	36	1.61
36890073--36890193	60	2.0	60	100	0	242	36	6	0	57	1.25
36890202--36890233	15	2.1	15	100	0	64	46	18	9	25	1.79
36894711--36894750	13	2.9	14	81	7	55	82	5	0	12	0.82
36894710--36894756	14	3.4	14	76	8	51	82	6	0	10	0.82
36895294--36895322	14	2.1	14	93	6	51	20	0	0	79	0.74
36895549--36895671	44	2.8	44	76	2	131	22	28	21	27	1.99
36895692--36896338	44	14.0	44	68	19	277	27	20	18	32	1.96
36895678--36896338	142	4.7	142	88	4	966	27	21	18	32	1.97
36895905--36896334	98	4.5	97	67	22	246	27	21	18	32	1.96
36896453--36896664	43	4.9	43	71	9	169	24	25	21	28	1.99
36897887--36897924	6	6.2	6	90	3	58	15	15	2	65	1.38
36898831--36898890	29	2.2	26	88	8	84	8	10	13	68	1.39
36898853--36898935	19	4.3	19	77	13	71	9	3	10	75	1.15
36898879--36898936	12	4.5	13	79	10	57	10	0	10	79	0.94
36904032--36904071	13	2.9	14	81	7	55	82	5	0	12	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36907990--36908042	23	2.4	22	76	20	56	9	18	1	69	1.25
36909335--36909368	9	3.9	9	88	7	52	8	8	11	70	1.34
36915502--36915797	147	2.0	147	94	0	520	50	7	14	28	1.69
36916489--36916542	28	1.9	28	88	0	81	51	1	1	44	1.22
36918564--36918625	26	2.3	27	83	2	72	67	3	1	27	1.15
36918644--36918696	23	2.3	24	75	15	58	56	1	5	35	1.34
36924553--36924633	36	2.2	36	100	0	162	25	25	11	37	1.89
36929907--36930002	50	1.9	50	85	4	131	35	16	14	33	1.89
36929997--36930045	23	2.3	22	89	10	75	28	20	14	36	1.92
36930015--36930080	19	3.5	19	77	4	62	27	22	15	34	1.94
36931964--36932006	21	2.0	21	90	0	68	34	2	13	48	1.56
36933166--36933213	22	2.2	22	84	0	60	50	14	22	12	1.77
36933594--36933714	31	4.0	31	79	6	140	63	0	2	33	1.08
36933594--36933645	10	4.9	11	79	11	56	57	0	1	40	1.10
36933631--36933716	19	4.4	19	77	8	100	67	0	2	30	1.03
36933594--36933716	60	2.0	61	90	1	194	63	0	2	34	1.08
36934091--36934150	28	2.2	28	93	3	104	43	6	8	41	1.61
36934566--36934638	33	2.1	35	92	7	123	56	6	19	17	1.63
36935288--36935350	20	3.2	20	72	16	60	74	0	19	6	1.02
36936629--36936683	12	4.8	12	71	13	53	69	16	7	7	1.35
36936609--36936689	33	2.5	33	82	6	94	66	19	4	8	1.37
36936623--36936683	21	2.8	21	85	7	68	67	18	6	8	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36936623--36936662	12	3.3	12	82	0	53	67	20	5	7	1.34
36936622--36936703	33	2.5	33	84	2	94	64	20	7	7	1.43
36946149--36946382	118	2.0	118	98	0	450	32	20	17	29	1.95
36947637--36947875	50	4.7	50	81	3	237	27	22	28	22	1.99
36955162--36955255	9	10.4	9	81	4	118	41	21	10	26	1.85
36955362--36955401	18	2.2	18	86	0	53	12	2	45	40	1.56
36956484--36956568	30	3.0	28	83	8	109	27	21	25	25	1.99
36956488--36956580	28	3.2	28	83	7	114	26	19	25	27	1.99
36956684--36956760	26	3.0	26	88	0	100	38	24	20	15	1.92
36956922--36957238	27	11.8	26	72	15	155	22	17	17	43	1.88
36956935--36957238	81	3.8	81	79	7	314	21	17	16	44	1.87
36956933--36957238	54	5.7	54	80	5	305	21	17	16	43	1.87
36961817--36962035	79	2.8	80	79	10	225	26	21	26	26	1.99
36961811--36962035	40	5.7	40	84	5	244	25	21	26	26	1.99
36961811--36962041	119	1.9	120	79	7	256	26	21	26	25	1.99
36961864--36962058	79	2.5	79	83	6	200	27	20	26	26	1.99
36963622--36963670	23	2.1	23	96	0	89	22	4	28	44	1.71
36970649--36970696	21	2.3	21	85	0	60	16	10	8	64	1.48
36981300--36981345	16	2.9	16	84	9	60	54	0	4	41	1.20
36982327--36982369	21	2.1	21	86	4	61	32	6	23	37	1.82
36983579--36983760	29	6.3	29	81	5	215	24	24	13	37	1.92
36983579--36983760	87	2.1	87	85	6	244	24	24	13	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37030353--37030454	44	2.3	44	81	1	114	27	22	12	37	1.91
37037156--37037200	19	2.4	19	96	0	81	13	15	40	31	1.86
37037405--37037452	19	2.7	17	87	12	78	29	18	14	37	1.91
37039366--37039572	28	7.4	28	87	2	301	33	22	20	22	1.97
37039679--37039728	26	1.9	26	100	0	100	36	20	22	22	1.96
37039961--37040102	27	5.3	27	82	0	167	18	17	21	42	1.89
37041772--37041808	11	3.4	11	92	0	56	21	5	43	29	1.75
37055089--37055144	25	2.2	26	77	9	60	30	25	16	28	1.96
37055100--37055157	25	2.3	25	93	0	98	29	20	15	34	1.94
37057705--37057813	54	2.0	54	100	0	218	35	20	12	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216