genome.fa.s15.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  141  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44734807--44735124	175	1.8	173	86	1	465	29	15	29	25	1.96
44741163--44741202	19	2.2	19	86	8	57	55	17	5	22	1.61
44743946--44744048	54	1.9	54	86	4	145	32	15	9	42	1.79
44743875--44744180	135	2.3	135	86	3	429	33	14	9	42	1.78
44744074--44744180	54	2.0	54	96	0	196	30	16	9	42	1.80
44747019--44747048	5	5.8	5	92	7	51	80	0	0	20	0.72
44747019--44747052	11	3.2	11	87	8	52	79	0	0	20	0.73
44754861--44755126	86	3.1	87	82	3	340	31	16	16	36	1.91
44760611--44760651	2	20.5	2	100	0	82	51	48	0	0	1.00
44762470--44762502	13	2.3	15	90	10	52	51	24	6	18	1.68
44762600--44762638	5	7.4	5	83	11	51	76	5	0	17	0.96
44762603--44762640	11	3.5	11	82	10	51	76	5	0	18	0.97
44762600--44762638	16	2.4	16	91	0	60	76	5	0	17	0.96
44764573--44764633	23	2.7	24	82	7	65	57	0	1	40	1.08
44764584--44764621	20	1.9	20	89	10	60	60	0	0	39	0.97
44764588--44764631	20	2.1	21	83	4	54	63	0	2	34	1.07
44768114--44768153	20	2.0	20	95	0	71	27	10	15	47	1.77
44768240--44768367	40	3.4	40	68	24	123	32	3	4	58	1.37
44768239--44768379	72	2.0	69	94	4	246	31	4	6	57	1.43
44768452--44768514	34	1.9	32	93	6	108	41	4	9	44	1.58
44770719--44770743	13	1.9	13	100	0	50	40	16	28	16	1.89
44779582--44779705	38	3.3	38	97	0	230	20	11	37	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44780863--44780976	58	1.9	59	91	1	185	38	2	8	50	1.48
44791745--44791856	44	2.5	44	89	0	170	25	22	26	25	2.00
44791828--44792356	128	4.1	128	90	0	801	29	20	24	25	1.99
44796891--44796938	25	1.9	25	91	0	78	35	6	12	45	1.67
44801518--44801659	44	3.1	44	72	18	126	27	16	21	33	1.95
44801671--44802162	40	11.7	40	67	12	209	25	21	22	30	1.99
44801618--44802172	127	4.4	127	91	0	867	25	20	22	31	1.98
44802247--44802693	50	8.9	50	63	4	157	25	22	21	29	1.99
44802249--44802693	100	4.4	100	88	2	653	26	22	21	29	1.99
44802249--44802693	197	2.2	200	91	2	707	26	22	21	29	1.99
44803673--44803734	13	5.0	12	81	14	65	1	19	1	77	0.94
44803689--44803735	20	2.5	20	86	6	62	4	19	0	76	0.95
44804183--44804226	10	4.5	10	82	5	54	9	9	4	77	1.12
44804192--44804228	9	4.0	9	86	6	56	13	10	2	72	1.21
44804177--44804225	19	2.7	18	84	6	62	8	10	6	75	1.18
44804192--44804228	19	1.9	19	94	0	65	13	10	2	72	1.21
44807609--44807672	8	7.8	8	75	13	58	71	10	3	14	1.25
44814549--44814578	3	10.3	3	92	7	53	30	0	0	70	0.88
44819730--44819841	42	2.7	42	92	2	190	33	14	28	24	1.94
44821049--44822698	132	12.5	132	87	3	2221	29	17	23	29	1.97
44821927--44822107	44	4.1	44	66	13	120	30	16	22	30	1.96
44822323--44822642	44	7.3	44	67	16	151	30	16	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44823187--44823211	2	12.5	2	100	0	50	52	48	0	0	1.00
44824209--44824244	3	12.3	3	94	5	65	30	0	0	69	0.89
44829945--44830051	44	2.6	40	72	18	110	34	4	28	32	1.78
44830177--44830218	15	2.7	16	82	14	52	52	2	0	45	1.13
44830157--44830345	55	3.3	54	66	21	134	51	5	1	42	1.31
44830186--44830227	15	2.9	15	82	10	52	52	0	0	47	1.00
44830294--44830345	15	3.6	15	80	12	56	53	1	0	44	1.11
44830180--44830590	120	3.4	120	95	1	711	49	5	2	41	1.40
44830414--44830465	15	3.6	15	80	12	56	53	1	0	44	1.11
44830531--44830813	91	3.0	93	84	7	317	48	3	3	45	1.34
44830572--44830739	47	3.6	47	71	17	145	47	3	2	45	1.35
44830631--44830691	28	2.2	28	85	5	81	50	3	0	45	1.17
44830606--44830813	91	2.3	90	90	4	326	46	4	3	45	1.39
44830587--44830773	47	4.1	43	69	16	119	48	3	2	45	1.32
44830656--44830794	47	3.0	47	68	17	137	49	4	2	43	1.34
44836526--44836611	23	3.7	23	75	17	97	50	15	17	17	1.79
44845707--44845748	18	2.3	18	91	0	66	9	16	11	61	1.55
44845948--44845988	17	2.3	18	80	19	50	29	9	12	48	1.72
44853677--44853715	19	2.1	19	95	0	69	35	12	15	35	1.86
44855031--44855070	21	1.9	21	85	10	55	22	45	0	32	1.53
44874612--44874656	15	3.0	15	80	0	54	44	2	15	37	1.59
44877117--44877190	21	3.6	21	72	3	69	25	21	37	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44877117--44877209	41	2.3	42	85	7	129	26	23	34	15	1.94
44877145--44877209	20	3.2	20	70	8	60	27	23	33	15	1.95
44880606--44880635	14	2.1	14	93	0	51	46	33	3	16	1.64
44881823--44881924	30	3.4	29	73	16	93	35	16	5	42	1.73
44882295--44882352	19	3.2	19	81	11	68	77	13	8	0	0.98
44882450--44882506	19	3.0	18	80	10	60	70	17	8	3	1.28
44882622--44882697	12	6.2	12	73	18	50	75	0	23	1	0.89
44882640--44882702	18	3.5	18	76	10	58	74	0	23	1	0.90
44882653--44882699	24	2.0	24	87	8	69	74	0	23	2	0.93
44883065--44883118	6	9.0	6	76	15	58	83	0	16	0	0.65
44883038--44883117	33	2.6	29	84	9	97	81	3	13	1	0.89
44883065--44883118	20	2.6	19	83	13	63	83	0	16	0	0.65
44883038--44883117	30	2.6	30	81	16	92	81	3	13	1	0.89
44883066--44883111	16	2.8	17	87	9	60	84	0	15	0	0.62
44883446--44883485	21	2.0	20	90	5	62	42	10	10	37	1.72
44883607--44883891	17	16.4	17	69	18	135	34	12	10	42	1.77
44883607--44883802	18	11.5	16	70	17	101	36	14	10	39	1.80
44883820--44883902	16	4.9	16	71	10	58	28	10	10	49	1.72
44895785--44896441	150	4.4	148	81	6	694	28	16	19	35	1.94
44895782--44896441	226	2.9	223	79	7	701	28	16	19	35	1.93
44895782--44896425	75	8.5	75	80	8	628	28	16	19	35	1.93
44896742--44896872	30	4.4	30	82	7	151	34	19	6	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44897544--44897595	15	3.2	15	79	15	59	75	0	23	1	0.91
44897548--44897603	21	2.7	20	77	5	67	76	0	21	1	0.87
44897548--44897610	21	3.0	20	75	9	56	76	0	20	3	0.93
44897939--44898027	13	6.6	13	72	19	67	76	3	19	1	0.99
44897940--44898027	23	3.9	23	66	20	60	76	3	19	1	1.00
44897977--44898027	12	4.5	11	83	11	59	78	0	21	0	0.75
44898510--44898602	33	2.8	33	82	11	93	38	11	8	40	1.73
44898511--44898630	33	3.6	31	77	13	89	35	11	10	42	1.75
44898641--44898689	18	2.7	18	87	6	64	32	16	6	44	1.72
44898510--44898695	17	10.9	17	67	18	93	34	12	9	43	1.75
44898608--44898777	93	1.8	91	82	9	218	34	12	9	42	1.76
44898610--44898741	17	7.2	18	67	27	57	34	12	9	43	1.76
44905823--44905868	23	2.0	23	91	0	74	47	13	8	30	1.72
44906879--44906918	21	1.9	21	90	10	64	22	12	10	55	1.67
44907230--44907274	17	2.8	16	78	18	56	51	0	2	46	1.13
44907270--44907325	19	2.8	20	81	13	62	42	3	3	50	1.37
44907295--44907341	20	2.3	20	78	7	51	42	4	0	53	1.20
44907418--44907443	9	2.9	9	100	0	52	23	0	19	57	1.40
44907541--44907695	77	2.0	76	96	1	283	32	23	10	33	1.89
44909574--44909682	53	2.1	53	85	3	148	44	10	9	36	1.70
44911935--44911965	16	1.9	16	93	0	53	83	0	6	9	0.79
44924971--44925016	21	2.2	21	84	0	56	23	41	23	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44924983--44925036	21	2.6	21	84	0	63	24	38	31	5	1.78
44928588--44928896	47	6.6	47	96	0	528	28	30	8	33	1.86
44928638--44928716	25	3.3	25	66	16	76	31	29	5	34	1.79
44932723--44932772	25	2.0	25	84	7	66	26	32	12	30	1.92
44932948--44933139	40	4.8	40	89	0	276	26	28	21	23	1.99
44934549--44934763	47	4.6	47	94	0	340	28	30	7	33	1.85
44934599--44934677	25	3.3	25	69	16	85	32	29	3	34	1.75
44954117--44954158	22	1.9	22	100	0	84	30	14	19	35	1.91
44957924--44957953	12	2.5	12	88	0	51	33	50	16	0	1.46
44959249--44959349	10	10.5	10	68	18	63	61	2	1	33	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216