genome.fa.s15.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  23  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6856790--6856941	45	3.4	44	72	10	148	28	22	26	22	1.99
6856753--6856995	88	2.8	88	88	2	373	25	24	26	23	2.00
6856748--6856955	44	4.7	43	70	12	154	25	25	26	22	2.00
6856981--6857729	44	17.0	44	65	10	195	31	22	22	24	1.98
6857287--6857733	90	5.0	89	85	2	567	30	22	23	24	1.99
6857278--6857691	177	2.3	178	85	3	575	30	23	23	23	1.99
6865884--6865929	21	2.1	22	84	11	60	32	2	0	65	1.05
6868016--6868100	25	3.7	23	86	12	129	44	18	4	31	1.71
6869362--6869437	38	2.0	38	89	0	116	51	7	13	27	1.68
6872933--6873181	50	4.8	50	85	5	284	21	29	23	25	1.99
6872932--6873181	100	2.4	104	86	5	328	22	29	23	25	1.99
6873276--6873307	13	2.5	13	94	0	55	56	12	0	31	1.37
6873519--6873575	29	1.9	30	85	3	80	31	24	1	42	1.65
6878274--6878333	21	2.8	22	70	7	52	38	26	18	16	1.92
6882571--6882601	12	2.6	12	100	0	62	51	6	0	41	1.27
6884186--6884305	40	2.8	44	81	12	160	21	20	24	34	1.97
6884306--6885656	134	10.1	134	94	1	2357	29	23	20	26	1.99
6884306--6885656	403	3.4	402	94	1	2366	29	23	20	26	1.99
6884306--6885656	537	2.5	536	95	1	2384	29	23	20	26	1.99
6885604--6885952	86	4.1	86	92	0	538	26	24	22	26	2.00
6885678--6885898	42	5.2	42	60	20	98	24	23	25	26	2.00
6890079--6890122	19	2.3	20	84	7	56	40	11	20	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6892459--6892487	10	2.9	10	100	0	58	51	6	0	41	1.28
6894011--6894068	20	3.0	20	75	12	66	60	0	5	34	1.19
6899099--6899123	13	1.9	13	100	0	50	40	16	8	36	1.77
6901321--6901408	42	2.2	41	81	6	99	27	29	25	18	1.98
6908286--6908442	78	2.0	78	94	0	278	23	29	14	31	1.94
6910438--6910503	31	2.1	31	94	0	114	39	18	13	28	1.89
6918379--6918405	7	3.9	7	100	0	54	14	0	40	44	1.46
6919576--6919623	25	2.0	24	87	4	69	43	12	0	43	1.42
6923973--6924009	11	3.4	11	88	0	56	45	0	0	54	1.00
6936334--6936450	30	3.9	29	80	7	119	30	21	3	44	1.69
6936698--6936747	10	5.2	10	80	7	59	70	0	30	0	0.88
6936701--6936743	19	2.3	19	88	11	63	69	0	30	0	0.88
6936804--6936856	17	3.3	17	77	20	60	67	0	32	0	0.91
6936804--6936849	14	3.1	14	84	12	56	67	0	32	0	0.91
6936803--6936861	25	2.3	24	82	8	64	69	0	30	0	0.89
6936983--6937007	12	2.1	12	100	0	50	84	8	8	0	0.79
6937138--6937207	15	4.6	14	83	11	77	82	0	17	0	0.66
6937138--6937206	7	9.1	7	82	17	77	82	0	17	0	0.67
6937138--6937217	8	10.2	8	84	9	87	81	0	18	0	0.70
6937758--6937831	37	2.0	37	84	5	96	33	12	12	41	1.79
6937877--6937954	17	4.6	18	72	22	69	33	12	7	46	1.71
6937859--6937953	34	2.8	34	87	4	120	30	15	8	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6937882--6937935	16	3.2	16	75	14	56	35	14	9	40	1.78
6937932--6937998	23	3.0	22	86	8	91	44	7	7	40	1.61
6937932--6937998	22	3.0	21	89	6	89	44	7	7	40	1.61
6937779--6938227	18	25.0	17	68	20	97	33	11	9	44	1.74
6946444--6947465	72	14.1	72	94	1	1708	30	17	18	33	1.94
6946440--6947465	217	4.7	217	95	1	1722	30	16	18	33	1.94
6946444--6947465	145	7.1	144	95	1	1701	30	17	18	33	1.94
6947549--6947581	14	2.4	14	95	5	59	12	9	9	69	1.36
6947380--6947571	86	2.2	87	77	11	214	24	18	16	40	1.91
6947592--6947841	53	4.7	54	87	6	359	31	15	17	36	1.91
6948083--6948119	14	2.4	16	82	17	51	75	2	0	21	0.92
6948115--6948230	30	3.9	29	81	7	117	31	21	3	43	1.69
6948477--6948519	10	4.4	10	82	5	52	69	0	30	0	0.88
6948482--6948526	16	2.8	17	83	12	60	66	0	33	0	0.92
6948480--6948519	19	2.2	18	86	13	55	70	0	30	0	0.88
6948581--6948626	3	15.0	3	82	13	58	63	0	36	0	0.95
6948584--6948612	10	2.9	10	100	0	58	62	0	37	0	0.96
6948581--6948626	13	3.7	13	81	18	62	63	0	36	0	0.95
6948581--6948639	25	2.3	24	85	8	73	67	0	32	0	0.91
6948717--6948782	17	3.5	18	69	17	53	78	12	7	1	1.01
6948747--6948779	17	1.9	17	93	0	57	78	12	6	3	1.04
6948760--6948784	12	2.1	12	100	0	50	84	8	8	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6948914--6948990	15	5.5	13	77	14	66	81	0	18	0	0.68
6948937--6948991	6	9.5	6	76	11	53	81	0	18	0	0.68
6948921--6948991	9	7.7	9	80	13	74	80	0	19	0	0.72
6948914--6948990	30	2.7	27	83	15	93	81	0	18	0	0.68
6948919--6948991	8	9.0	8	86	11	80	80	0	19	0	0.71
6949531--6949586	18	3.1	19	79	5	62	33	10	14	41	1.80
6949531--6949982	17	25.1	18	70	11	71	33	11	10	44	1.74
6949531--6949604	37	2.0	37	84	5	96	33	12	12	41	1.79
6949632--6949726	34	2.8	34	87	4	120	30	15	8	45	1.76
6949655--6949708	16	3.2	16	75	14	56	35	14	9	40	1.78
6949705--6949771	23	3.0	22	86	8	91	44	7	7	40	1.61
6949705--6949771	22	3.0	21	89	6	89	44	7	7	40	1.61
6949552--6949981	18	24.0	17	68	19	109	33	11	10	45	1.74
6958914--6959108	98	2.0	98	96	0	363	36	24	10	28	1.88
6960256--6960347	19	4.8	19	91	0	157	35	15	10	38	1.82
6960233--6960347	38	2.9	38	88	5	158	38	14	9	37	1.79
6962281--6962360	28	3.0	25	77	16	63	33	3	0	62	1.13
6962298--6962358	28	2.1	30	90	9	99	37	4	0	57	1.20
6962293--6962367	39	1.9	39	81	10	91	37	4	0	58	1.17
6963992--6964059	21	3.3	20	81	8	66	41	1	2	54	1.24
6964006--6964059	20	2.6	20	82	5	63	38	1	1	57	1.20
6967282--6967310	12	2.3	13	88	11	51	37	6	6	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6967285--6967310	12	2.2	12	100	0	52	38	7	7	46	1.61
6981384--6981481	51	1.9	51	80	0	115	34	13	29	22	1.92
6981646--6981723	33	2.4	33	88	0	120	48	20	11	19	1.79
6983965--6984149	13	13.7	13	73	14	97	34	17	2	45	1.61
6983965--6984113	42	3.6	42	90	3	248	35	16	2	44	1.62
6988624--6988668	22	2.0	22	91	0	72	24	2	0	73	0.95
6992426--6992455	6	4.8	6	95	4	51	13	3	0	83	0.77
6992634--6992667	10	3.5	10	84	8	52	79	0	0	20	0.73
6992625--6992673	19	2.6	19	81	12	73	69	0	4	26	1.06
6994327--6994382	28	2.0	28	82	6	69	28	10	14	46	1.78
7003638--7003704	31	2.2	31	100	0	134	20	14	13	50	1.77
7007553--7007608	22	2.6	21	81	10	69	48	5	0	46	1.25
7007557--7007603	23	2.0	23	88	8	69	46	6	0	46	1.28
7007600--7007625	11	2.4	11	100	0	52	61	0	0	38	0.96
7011982--7012993	503	2.0	503	100	0	2024	32	20	15	31	1.94
7021116--7021145	15	2.0	15	93	0	51	56	0	10	33	1.32
7021419--7021558	69	2.0	73	88	5	216	35	14	4	45	1.64
7025325--7025377	12	4.4	12	82	0	61	3	15	7	73	1.20
7027694--7027732	20	2.0	20	89	0	60	30	33	23	12	1.92
7037590--7037632	17	2.5	17	85	11	52	67	2	0	30	1.03
7037603--7037654	26	2.0	26	81	7	61	63	0	3	32	1.12
7038439--7038473	18	1.9	18	88	11	54	48	0	8	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7042610--7042653	23	1.9	23	81	9	54	38	4	2	54	1.33
7045407--7045454	17	2.9	17	79	17	57	29	20	12	37	1.90
7060858--7060916	17	3.4	17	71	17	57	57	6	1	33	1.35
7060863--7060915	19	2.9	18	71	17	56	56	5	1	35	1.34
7061004--7061052	20	2.5	19	84	12	64	32	0	36	30	1.58
7060953--7061112	75	2.2	71	85	6	205	39	0	33	26	1.61
7063593--7063671	25	3.2	25	87	7	115	32	22	21	22	1.98
7063561--7063671	50	2.2	50	85	0	141	32	22	18	26	1.97
7065292--7065336	22	2.0	22	100	0	90	31	0	33	35	1.58
7068198--7068241	23	2.0	22	81	4	52	31	22	13	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216