genome.fa.s15.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  31  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8998766--8998827	18	3.6	18	77	16	69	58	0	6	35	1.24
8998763--8998827	35	1.9	33	84	12	87	56	0	7	35	1.28
9002155--9002185	6	5.2	6	92	0	53	16	54	12	16	1.71
9002149--9002185	12	3.1	12	88	0	56	18	54	10	16	1.71
9002507--9002538	9	3.6	9	91	0	55	12	56	18	12	1.67
9007324--9007362	12	3.2	12	85	7	51	74	0	0	25	0.82
9014088--9014113	13	2.0	13	100	0	52	38	0	15	46	1.46
9015400--9015849	51	8.9	51	77	5	421	29	14	26	30	1.95
9015399--9015849	102	4.4	102	88	1	622	29	13	26	30	1.94
9019940--9020028	46	1.9	46	100	0	178	20	13	25	40	1.89
9028398--9028465	29	2.3	29	79	0	73	44	4	20	30	1.71
9028481--9028523	18	2.4	18	81	18	54	39	2	9	48	1.48
9033501--9033553	15	3.4	16	84	7	65	71	0	1	26	0.96
9033973--9034036	29	2.2	29	91	0	101	39	3	28	29	1.72
9040361--9040386	11	2.4	11	100	0	52	26	0	0	73	0.84
9041190--9041310	59	2.1	59	93	0	206	33	5	6	54	1.50
9046341--9046402	30	2.1	30	93	0	106	25	3	12	58	1.50
9046525--9046557	12	2.8	12	90	4	50	69	0	0	30	0.88
9051096--9051149	21	2.4	22	81	9	65	46	1	0	51	1.11
9051133--9051398	140	1.9	140	92	1	453	43	10	11	34	1.75
9053411--9053454	18	2.4	18	84	0	52	20	27	9	43	1.82
9053711--9053751	21	2.0	21	85	0	55	29	36	21	12	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9055474--9055521	3	16.0	3	82	0	51	27	37	6	29	1.81
9055472--9055518	12	3.9	12	88	0	67	25	38	8	27	1.85
9056884--9057055	72	2.4	72	84	5	233	56	13	5	25	1.58
9057478--9057543	18	3.7	18	97	0	123	39	12	13	34	1.82
9058691--9058750	31	1.9	31	100	0	120	51	6	10	31	1.61
9059738--9059762	11	2.3	11	100	0	50	52	28	12	8	1.66
9059767--9059815	20	2.5	19	83	6	71	67	6	12	14	1.40
9060457--9060730	97	2.8	97	88	6	387	39	15	2	42	1.60
9060796--9060855	7	8.6	7	77	5	50	55	35	0	10	1.34
9060818--9060860	14	3.0	15	83	10	54	55	32	0	11	1.36
9062432--9062466	18	1.9	18	94	0	61	28	22	11	37	1.89
9062468--9062943	166	2.8	164	80	13	510	36	17	11	34	1.86
9062591--9062990	180	2.2	182	86	6	556	31	18	11	38	1.87
9063664--9064040	35	10.6	35	67	11	135	44	11	12	32	1.78
9063664--9063818	53	2.9	52	81	9	163	47	12	10	29	1.75
9063665--9063826	70	2.3	69	77	6	164	46	12	10	30	1.75
9064074--9064115	17	2.4	18	88	4	59	38	7	16	38	1.76
9064141--9064187	19	2.5	19	86	10	62	42	6	12	38	1.69
9064142--9064379	18	13.3	18	70	13	109	49	10	9	30	1.69
9064156--9064363	35	5.8	35	66	11	98	51	11	8	29	1.66
9064280--9064379	17	5.8	17	75	10	78	48	12	9	31	1.71
9063664--9064054	17	22.0	18	68	13	186	44	11	12	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9064359--9064404	22	2.1	22	84	4	58	30	6	10	52	1.62
9064491--9064516	11	2.4	11	100	0	52	7	0	0	92	0.39
9064999--9065087	1	89.0	1	72	0	61	0	14	0	85	0.60
9064998--9065072	7	11.0	7	80	20	88	0	14	0	85	0.60
9064989--9065089	31	3.2	31	86	9	118	0	16	0	83	0.65
9064988--9065089	46	2.2	48	86	10	140	0	17	0	82	0.67
9065217--9065246	10	3.0	10	100	0	60	0	10	0	90	0.47
9065258--9065301	18	2.4	18	84	3	52	2	15	50	31	1.57
9065285--9065348	20	3.2	20	93	2	101	9	26	43	20	1.82
9065365--9065426	3	19.0	3	87	12	79	0	33	0	66	0.92
9065365--9065426	22	2.6	24	90	7	92	0	33	0	66	0.92
9065770--9065925	30	5.2	30	81	6	156	39	3	21	34	1.72
9065782--9065925	29	4.9	29	83	4	153	40	3	20	34	1.70
9065782--9065918	60	2.3	59	87	5	195	42	3	20	33	1.70
9065923--9065957	9	3.9	9	84	0	52	11	0	5	82	0.82
9066121--9067013	74	11.6	73	81	11	843	33	21	17	28	1.96
9066082--9067040	155	6.2	155	78	12	697	33	20	17	28	1.95
9066791--9067031	83	2.9	83	79	12	266	32	20	16	30	1.95
9067902--9067976	11	6.6	11	81	15	91	0	2	9	88	0.62
9067916--9067975	8	7.9	8	85	7	81	0	1	10	88	0.59
9067902--9067976	1	75.0	1	75	0	69	0	2	9	88	0.62
9067902--9067976	13	5.3	14	76	13	82	0	2	9	88	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9075372--9075396	4	6.2	4	100	0	50	52	0	24	24	1.48
9077175--9077587	17	23.3	17	69	13	192	45	11	12	31	1.77
9077175--9077896	35	19.8	36	66	16	258	45	10	11	31	1.75
9077175--9077896	18	39.5	18	67	16	258	45	10	11	31	1.75
9077655--9077696	19	2.2	19	86	4	57	45	11	11	30	1.77
9077785--9077826	22	1.9	22	85	0	57	64	11	2	21	1.38
9077807--9077903	17	5.6	17	76	9	88	49	13	11	25	1.75
9077859--9077910	18	2.9	19	80	11	56	46	11	11	30	1.76
9078518--9078573	19	3.1	19	75	21	66	0	21	1	76	0.87
9078531--9078561	16	2.0	16	93	6	55	0	16	0	83	0.64
9078531--9078573	10	4.7	9	81	13	52	0	18	0	81	0.69
9078844--9078889	3	14.0	3	86	13	56	0	32	0	67	0.91
9078847--9078882	18	2.1	17	94	5	63	0	30	0	69	0.89
9079212--9079329	29	4.0	29	76	5	110	38	4	24	33	1.75
9083486--9083530	10	4.6	10	81	13	58	77	0	11	11	0.99
9099700--9099763	21	3.0	21	88	0	101	10	20	18	50	1.77
9100614--9100782	30	5.6	30	92	0	257	23	30	30	15	1.95
9100614--9100722	15	7.1	17	70	23	98	23	31	30	14	1.95
9100652--9100729	13	5.4	13	72	21	66	24	34	29	11	1.91
9101381--9101422	21	2.0	21	85	0	57	21	23	28	26	1.99
9101811--9101841	15	2.1	15	100	0	62	54	6	12	25	1.62
9104838--9104886	18	2.6	20	75	9	50	30	2	10	57	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9109857--9110117	129	2.0	129	89	0	396	33	20	12	33	1.90
9117469--9117507	19	2.1	19	85	0	51	20	7	2	69	1.26
9119739--9119786	23	2.1	23	84	3	62	29	16	16	37	1.91
9121163--9121252	44	2.0	44	93	4	155	31	27	8	32	1.87
9122551--9122645	48	2.0	48	95	0	172	30	27	14	27	1.95
9134040--9134073	6	5.5	6	86	6	50	0	14	0	85	0.60
9134040--9134071	10	3.3	10	91	8	57	0	15	0	84	0.63
9147736--9147784	21	2.3	22	86	10	66	20	2	4	73	1.10
9153846--9153880	9	3.9	9	84	0	52	20	28	11	40	1.87
9163827--9163915	43	2.1	43	100	0	178	31	29	10	29	1.90
9168833--9168877	17	2.6	17	89	0	54	24	17	31	26	1.97
9168850--9168929	17	4.8	16	73	15	63	25	15	28	31	1.95
9168850--9168933	34	2.5	34	86	0	123	23	14	29	32	1.94
9182501--9182752	124	2.0	124	96	0	468	35	17	13	33	1.88
9195557--9195690	65	2.1	65	92	2	225	14	21	23	39	1.91
9207029--9207097	31	2.2	31	87	5	95	37	10	15	36	1.82
9211894--9211931	13	2.9	13	84	0	58	28	31	5	34	1.80
9216560--9216626	22	3.0	22	78	8	64	43	1	0	55	1.09
9216589--9216629	16	2.6	16	78	21	50	34	2	0	63	1.08
9216601--9216643	17	2.6	16	82	10	50	39	0	0	60	0.97
9216692--9216787	30	3.2	30	64	19	81	52	7	6	34	1.55
9216666--9216790	61	2.0	61	98	0	241	50	8	6	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9218347--9218390	18	2.4	19	84	3	63	20	29	0	50	1.49
9218509--9219060	115	4.9	113	92	2	851	26	19	26	27	1.99
9218960--9219118	73	2.2	73	88	0	228	25	21	23	28	1.99
9219772--9219809	14	2.7	15	88	12	62	26	0	31	42	1.56
9220299--9220399	47	2.1	47	92	3	168	47	7	0	44	1.32
9224671--9224700	15	2.0	15	93	0	51	50	0	33	16	1.46
9225043--9225179	43	3.2	43	83	3	159	25	16	27	30	1.97
9225921--9225947	5	5.4	5	100	0	54	22	18	18	40	1.91
9233458--9233488	3	10.3	3	100	0	62	32	0	0	67	0.91
9234988--9235051	26	2.4	27	94	5	112	40	10	0	48	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216