genome.fa.s15.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  149  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47038725--47038783	19	3.0	20	80	5	75	35	13	0	50	1.42
47038723--47038782	20	3.1	19	80	4	75	33	13	0	53	1.40
47038783--47038818	10	3.5	10	88	7	54	38	0	0	61	0.96
47038784--47038818	11	3.3	11	88	8	54	37	0	0	62	0.95
47038731--47038875	9	15.6	9	70	19	66	34	4	2	58	1.31
47038815--47038857	20	2.3	19	84	15	54	30	2	4	62	1.28
47038744--47038857	47	2.4	46	77	11	115	35	4	1	57	1.29
47041913--47042824	457	2.0	452	92	2	1524	28	10	14	45	1.79
47047364--47047412	20	2.5	20	87	9	66	48	20	4	26	1.67
47050672--47050715	16	2.8	16	77	16	56	38	2	0	59	1.10
47064066--47064119	28	1.9	27	85	14	74	46	0	7	46	1.31
47064192--47064232	17	2.3	19	83	8	59	26	0	2	70	0.99
47064171--47064233	18	3.3	19	81	16	60	30	0	1	68	0.99
47065384--47065455	10	7.4	10	72	20	64	54	1	0	44	1.08
47065387--47065449	16	3.9	16	77	6	56	53	1	0	44	1.10
47065400--47065462	26	2.5	25	76	19	76	55	1	0	42	1.09
47065384--47065455	21	3.7	20	73	23	64	54	1	0	44	1.08
47065379--47065497	58	2.1	56	86	7	161	52	2	0	44	1.14
47066381--47066476	44	2.1	46	83	7	117	43	3	15	37	1.63
47066528--47066568	16	2.6	16	88	0	55	46	2	0	51	1.14
47066541--47066580	16	2.5	16	91	0	62	45	0	0	55	0.99
47075299--47075617	117	2.8	114	83	4	385	24	4	17	54	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47076483--47076523	18	2.5	17	81	14	50	43	0	0	56	0.99
47078975--47079002	14	2.0	14	100	0	56	64	0	7	28	1.20
47080103--47080156	18	2.9	17	76	13	54	29	18	9	42	1.81
47085594--47085642	18	2.7	18	81	12	55	38	14	0	46	1.44
47097005--47097064	25	2.5	25	86	7	81	23	11	46	18	1.81
47101160--47101545	47	8.1	47	85	7	508	30	12	30	26	1.92
47101160--47101545	98	4.0	97	87	6	556	30	12	30	26	1.92
47101234--47101308	23	3.2	23	62	23	57	28	13	33	25	1.93
47101160--47101545	145	2.7	141	85	8	532	30	12	30	26	1.92
47101171--47101594	93	4.5	91	85	7	289	31	12	30	26	1.92
47101519--47101609	46	2.0	46	84	0	119	32	9	31	25	1.89
47101755--47101895	37	3.9	36	92	1	219	24	17	31	26	1.97
47103159--47103508	40	8.8	40	93	1	562	22	22	29	25	1.99
47103720--47103828	57	1.9	57	88	1	164	23	19	28	28	1.98
47107557--47107944	47	8.1	47	86	6	528	31	12	29	26	1.93
47107631--47107706	24	3.2	24	62	23	61	28	13	32	25	1.93
47107755--47107829	23	3.2	23	62	23	57	29	10	32	28	1.90
47107557--47107944	100	4.0	98	89	5	587	31	12	29	26	1.93
47107560--47107944	147	2.7	141	86	8	535	31	12	29	26	1.93
47107916--47108014	46	2.1	48	79	5	112	34	9	29	27	1.87
47108158--47108297	73	1.9	73	94	0	244	25	18	30	25	1.98
47108154--47108297	37	3.9	37	94	1	245	24	19	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47110550--47110694	65	2.3	60	77	8	146	33	10	15	40	1.82
47110643--47110773	61	2.1	61	81	2	156	35	8	16	40	1.78
47110890--47110942	25	2.1	25	92	0	88	35	16	20	26	1.94
47110915--47111047	41	3.2	41	93	0	221	32	18	18	31	1.94
47113958--47113982	11	2.3	11	100	0	50	48	0	8	44	1.32
47117604--47117734	64	2.0	64	95	0	235	51	3	7	36	1.48
47117610--47117712	32	3.2	32	64	10	84	54	2	9	33	1.48
47117834--47117906	20	3.3	20	66	20	56	42	6	2	47	1.44
47117826--47117932	46	2.3	46	91	0	169	42	7	3	45	1.50
47119752--47119815	3	21.0	3	96	3	119	34	0	0	65	0.93
47128293--47128349	19	2.8	21	71	10	55	63	1	5	29	1.27
47130093--47130180	7	12.6	7	88	0	104	28	21	0	50	1.49
47157937--47157974	7	5.4	7	93	0	67	26	13	26	34	1.93
47160630--47160740	45	2.5	44	82	5	125	36	16	26	21	1.94
47163530--47163562	5	6.6	5	100	0	66	81	0	0	18	0.68
47169341--47169399	23	2.6	23	86	0	82	28	38	18	13	1.89
47173138--47173203	29	2.2	30	91	2	116	21	24	15	39	1.91
47174730--47174763	17	2.1	17	88	5	52	41	32	5	20	1.76
47179082--47179121	18	2.3	17	83	8	53	42	10	2	45	1.51
47179199--47179287	27	3.3	27	77	17	78	66	1	11	21	1.30
47179216--47179287	27	2.7	27	81	14	87	66	1	12	19	1.31
47179190--47179458	70	3.8	69	73	19	221	62	0	10	26	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47179262--47179443	21	8.0	21	69	21	102	62	0	10	26	1.31
47179236--47179299	27	2.4	27	82	10	78	64	1	15	18	1.38
47179335--47179458	23	5.7	20	71	26	74	64	0	7	27	1.25
47179446--47179514	17	4.1	17	75	5	68	56	0	17	26	1.41
47179869--47179907	18	2.1	18	85	4	51	69	0	7	23	1.14
47179896--47179996	5	18.0	5	72	17	58	51	0	18	29	1.47
47179872--47179996	30	4.2	30	75	18	86	54	0	16	29	1.42
47179898--47179967	12	6.0	12	74	12	56	50	0	18	31	1.48
47179898--47179968	35	2.1	33	82	10	81	50	0	18	30	1.47
47179921--47179996	28	2.7	27	86	8	91	50	0	19	30	1.48
47180031--47180138	18	5.6	19	76	16	98	59	1	8	30	1.38
47180018--47180133	21	5.7	20	77	17	100	58	1	8	31	1.38
47180093--47180161	17	4.1	17	75	24	67	57	0	10	31	1.32
47180184--47180259	5	14.6	5	77	13	73	63	2	17	17	1.43
47180183--47180259	22	3.6	22	75	15	81	62	2	16	18	1.44
47180184--47180259	11	7.3	10	74	14	73	63	2	17	17	1.43
47180634--47180677	23	1.9	23	81	9	54	65	2	6	25	1.28
47180718--47180754	19	1.9	19	94	0	65	51	0	18	29	1.47
47180740--47180789	17	2.9	17	80	19	59	60	0	10	30	1.30
47180651--47180769	47	2.5	46	77	9	116	56	0	14	28	1.44
47180786--47180826	18	2.3	18	86	0	55	65	2	14	17	1.37
47183494--47183726	89	2.6	91	88	5	346	58	12	4	24	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47183551--47183696	48	3.2	48	66	20	130	56	11	4	27	1.53
47185395--47185425	16	1.9	16	93	0	53	25	29	0	45	1.54
47186351--47186388	3	12.7	3	100	0	76	68	0	0	31	0.90
47196077--47196211	43	3.1	43	84	4	173	31	27	17	24	1.97
47196320--47196365	24	2.0	23	83	12	58	41	0	4	54	1.20
47196311--47196365	20	2.5	21	80	14	58	40	0	3	56	1.17
47198653--47198698	21	2.2	21	88	0	65	52	19	8	19	1.72
47205815--47205856	15	2.8	15	85	0	57	50	30	0	19	1.48
47205905--47205947	22	2.0	22	85	0	59	46	30	0	23	1.52
47206299--47206608	41	7.6	41	78	7	285	32	26	18	22	1.97
47206322--47206622	163	1.8	163	83	6	405	32	27	18	21	1.97
47206328--47206640	122	2.6	122	77	5	258	31	27	18	22	1.97
47215197--47215243	24	2.0	23	83	4	58	21	12	12	53	1.72
47220948--47220977	8	3.8	8	95	0	51	23	0	6	70	1.11
47231322--47231397	6	12.2	6	73	13	55	17	2	6	73	1.16
47245832--47245894	22	2.7	23	72	13	58	33	3	23	39	1.71
47250820--47250972	27	5.5	28	89	3	220	27	12	27	32	1.92
47250820--47250972	55	2.7	55	89	2	225	27	12	27	32	1.92
47319805--47319856	27	1.9	27	96	0	95	13	25	32	28	1.93
47319729--47319951	103	2.2	104	92	2	369	18	19	30	31	1.96
47319870--47320021	71	2.1	72	91	1	243	23	17	28	30	1.97
47321511--47322192	342	2.0	342	93	1	1161	33	19	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47325424--47325460	2	18.5	2	100	0	74	48	0	51	0	1.00
47327907--47327939	15	2.4	14	90	10	50	21	12	0	66	1.23
47328366--47328404	14	2.7	15	80	8	53	64	0	0	35	0.94
47328858--47328894	14	2.6	14	91	0	56	24	43	0	32	1.55
47330358--47330399	22	2.0	21	90	4	66	45	0	40	14	1.45
47333590--47333666	37	2.1	37	95	0	136	40	14	15	29	1.87
47335018--47335147	48	2.7	48	91	5	201	50	0	6	43	1.29
47336787--47336812	12	2.2	12	100	0	52	38	0	19	42	1.51
47336788--47337038	129	1.9	129	90	1	396	26	11	21	40	1.87
47339514--47339841	163	2.0	164	91	1	534	25	17	18	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216