genome.fa.s15.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  109  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34610022--34610084	30	2.1	30	93	0	108	47	6	11	34	1.64
34610307--34610344	10	3.9	10	86	3	51	52	0	5	42	1.24
34610306--34610344	19	2.0	21	85	10	55	53	0	5	41	1.23
34610884--34610931	14	3.4	14	88	5	78	43	6	0	50	1.27
34612853--34612923	20	3.4	21	76	17	76	50	2	2	43	1.31
34613353--34613377	9	2.8	9	100	0	50	40	0	0	60	0.97
34619217--34619281	22	3.0	21	76	13	69	44	18	18	18	1.87
34619303--34619505	32	6.3	32	89	0	298	37	22	19	20	1.94
34619320--34619502	96	1.9	96	95	0	330	38	22	18	20	1.93
34619512--34619561	26	1.9	26	87	0	73	36	24	24	16	1.94
34619549--34619608	27	2.2	27	82	11	70	31	21	25	21	1.98
34619681--34619758	24	3.3	24	73	8	70	51	20	5	23	1.67
34619780--34620165	27	14.3	27	84	1	479	25	20	18	36	1.95
34624934--34625511	47	12.1	47	91	3	906	31	8	30	28	1.87
34624934--34625511	96	6.0	94	91	4	906	31	8	30	28	1.87
34624934--34625511	145	4.0	143	94	1	955	31	8	30	28	1.87
34625630--34625708	37	2.1	37	90	0	122	22	18	32	25	1.97
34627575--34627677	44	2.4	44	98	1	199	22	15	34	27	1.94
34627659--34627732	29	2.6	29	89	4	105	25	16	32	25	1.96
34628045--34628187	40	3.6	40	85	3	171	24	21	27	26	1.99
34631969--34632499	47	11.1	47	92	3	805	31	8	30	29	1.87
34631969--34632499	145	3.7	143	92	4	840	31	8	30	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34632618--34632696	37	2.1	37	90	0	122	24	18	31	25	1.98
34635351--34635379	13	2.1	14	93	6	51	34	27	20	17	1.95
34640152--34640200	25	2.0	25	88	8	73	38	6	18	36	1.76
34660779--34660928	76	2.0	76	83	0	192	42	19	14	24	1.88
34669974--34670041	36	1.9	36	88	8	104	42	2	0	54	1.15
34670024--34670056	16	2.1	16	88	5	50	24	3	0	72	0.98
34676970--34677001	12	2.6	13	85	14	50	37	0	6	56	1.25
34680966--34681321	41	8.7	41	89	0	523	27	20	28	23	1.99
34683153--34683338	102	1.8	102	85	6	261	24	17	26	30	1.97
34683342--34683433	44	2.1	45	87	2	132	25	19	23	31	1.98
34691752--34691929	91	2.0	90	84	4	232	34	14	21	29	1.93
34694319--34694378	22	2.7	22	82	5	77	21	16	16	45	1.86
34694310--34694382	22	3.3	21	79	7	76	23	19	17	39	1.92
34694309--34694396	44	2.0	44	80	12	101	21	20	19	38	1.93
34694674--34694709	17	2.1	17	89	0	54	63	0	11	25	1.27
34695643--34695706	25	2.5	25	87	5	83	23	20	23	32	1.98
34695659--34695706	25	1.9	25	95	0	87	27	16	18	37	1.92
34698566--34698633	29	2.3	29	89	0	100	44	16	25	14	1.85
34705401--34705597	29	6.8	29	81	6	211	38	16	24	19	1.92
34715969--34716013	18	2.5	19	80	20	60	44	2	13	40	1.56
34718066--34718144	37	2.1	37	90	0	122	25	31	18	24	1.98
34718263--34718613	47	7.5	47	94	0	594	28	29	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34722649--34722946	40	7.8	39	89	8	443	25	26	20	27	1.99
34722666--34722946	76	3.7	76	95	1	501	26	26	20	27	1.99
34724159--34724229	37	1.9	37	88	0	106	30	30	15	22	1.95
34724355--34724517	47	3.5	47	91	0	254	27	31	8	32	1.87
34728510--34728856	40	8.8	40	84	2	452	26	25	21	27	1.99
34730068--34730146	37	2.1	37	88	0	113	26	30	18	24	1.98
34730267--34730380	47	2.4	47	86	0	156	27	31	8	32	1.87
34743638--34743713	39	1.9	39	86	2	107	43	18	18	19	1.88
34752918--34752977	26	2.3	26	80	8	70	65	0	3	31	1.09
34758477--34758542	26	2.5	26	87	0	105	24	27	22	25	2.00
34767229--34767406	51	3.5	51	77	3	155	24	17	26	30	1.97
34767611--34767683	37	1.9	38	86	2	103	45	2	20	31	1.65
34771783--34771982	93	2.2	90	79	7	231	36	26	12	25	1.91
34773056--34773111	27	2.1	27	83	6	69	39	14	8	37	1.77
34779706--34779832	64	2.0	63	93	1	218	47	14	9	28	1.76
34779785--34779842	28	2.1	28	86	0	80	51	13	6	27	1.66
34784251--34784289	20	2.0	20	85	10	53	2	33	2	61	1.23
34790332--34790449	61	1.9	61	82	3	148	40	16	4	38	1.68
34800157--34800249	29	3.2	30	77	10	86	37	23	3	35	1.71
34800270--34800326	22	2.6	23	78	15	66	54	19	0	26	1.44
34800279--34800311	16	2.1	17	88	11	52	60	15	0	24	1.35
34800257--34800361	57	2.0	53	82	16	128	56	19	0	24	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34802474--34802569	38	2.5	38	81	8	115	34	17	19	28	1.95
34802503--34802590	38	2.3	38	82	5	99	35	19	20	25	1.96
34809811--34809856	23	2.0	23	95	0	83	19	13	4	63	1.46
34818409--34818680	134	2.0	135	95	0	492	32	5	19	41	1.76
34820790--34820823	17	1.9	18	88	5	52	82	5	8	2	0.93
34823460--34823501	22	1.9	22	95	0	75	23	14	9	52	1.71
34823460--34823509	22	2.3	22	89	0	73	24	14	8	54	1.66
34828354--34828391	19	2.0	19	90	10	60	21	39	0	39	1.53
34857710--34857757	24	2.0	25	83	4	62	33	18	14	33	1.91
34858085--34858133	18	2.6	19	78	12	57	40	14	2	42	1.57
34860738--34860801	28	2.3	29	82	15	73	18	14	9	57	1.63
34860798--34860823	7	3.7	7	100	0	52	26	0	11	61	1.30
34870231--34870283	27	2.0	27	96	0	97	43	1	3	50	1.30
34871092--34871146	25	2.2	26	78	15	62	30	3	1	63	1.22
34879628--34879947	75	4.3	75	82	1	354	21	19	19	39	1.93
34885316--34885442	67	1.9	67	95	3	229	19	26	7	46	1.76
34886279--34886405	67	1.9	68	88	4	195	48	7	25	19	1.74
34890216--34890273	19	2.8	20	78	19	66	77	0	15	6	0.97
34894961--34895002	21	2.0	21	85	0	57	33	23	11	30	1.91
34917169--34917193	7	3.6	7	100	0	50	88	0	0	12	0.53
34923073--34923118	21	2.2	21	84	7	58	60	2	2	34	1.21
34929085--34929134	12	4.3	12	75	14	52	74	10	2	14	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34929790--34929815	13	2.0	13	100	0	52	23	30	23	23	1.99
34930441--34930493	24	2.2	25	83	6	65	37	18	24	18	1.94
34930460--34930596	73	1.9	73	80	8	163	35	18	24	21	1.95
34930579--34930660	26	3.2	26	78	3	94	39	20	23	17	1.92
34933050--34933083	14	2.4	14	100	0	68	64	17	0	17	1.29
34937346--34937373	5	5.6	5	100	0	56	82	0	0	17	0.68
34940184--34940223	21	2.0	20	90	5	62	35	0	25	40	1.56
34942099--34942150	25	2.1	25	85	0	68	53	13	7	25	1.65
34947703--34947758	18	3.1	18	70	12	51	8	5	41	44	1.58
34948186--34948453	138	1.9	138	87	1	385	27	18	20	33	1.96
34948246--34948450	44	4.5	44	66	14	112	27	19	20	32	1.97
34952969--34952998	11	2.8	11	95	5	53	26	20	6	46	1.75
34956499--34956539	19	2.2	19	86	8	57	43	4	21	29	1.73
34961525--34961585	28	2.1	29	84	3	79	18	21	40	19	1.91
34961596--34961638	22	2.0	22	90	0	68	11	16	27	44	1.82
34961686--34961895	43	4.9	43	88	0	303	27	31	20	21	1.98
34962493--34962941	23	19.7	23	75	10	361	39	23	6	30	1.79
34962493--34962941	68	6.6	69	74	12	298	39	23	6	30	1.79
34962540--34962950	159	2.6	160	96	0	761	40	23	5	29	1.78
34964956--34964988	17	1.9	17	100	0	66	21	24	6	48	1.72
34966079--34966107	14	2.0	15	93	6	51	34	48	0	17	1.47
34967056--34967420	41	8.9	41	87	3	461	29	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34967481--34967598	40	3.0	40	81	9	145	23	18	19	38	1.93
34967668--34967722	18	3.0	18	78	2	56	9	7	41	41	1.64
34968852--34968959	19	5.7	18	71	21	62	38	0	3	57	1.17
34968844--34968920	37	2.1	37	81	13	88	36	0	5	58	1.21
34968887--34968959	29	2.6	28	75	12	69	39	0	4	56	1.19
34968947--34968984	19	2.1	18	85	14	51	21	2	0	76	0.91
34969760--34969797	20	2.0	20	94	5	69	23	18	0	57	1.40
34970409--34970458	23	2.2	23	89	7	75	56	0	2	42	1.11
34972237--34973431	597	2.0	597	97	0	2245	46	10	13	29	1.76
34973894--34973924	4	7.8	4	92	0	53	70	0	3	25	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216