Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  132  of  216  ( 25871 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41995578--41995622
10
4.3
10
81
10
54
20
2
0
77
0.87
41995578--41995612
12
3.1
12
92
8
56
22
0
0
77
0.78
41995578--41995624
22
2.1
22
88
0
67
19
2
0
78
0.85
41995578--41995621
19
2.4
18
82
17
56
20
2
0
77
0.88
42003789--42003975
51
3.7
49
75
11
173
25
16
27
31
1.97
42004104--42004176
37
1.9
37
84
13
96
42
1
23
32
1.63
42008695--42008760
4
16.5
4
100
0
132
50
25
0
24
1.50
42013433--42013596
43
3.8
43
81
7
190
31
23
19
26
1.98
42013529--42013677
44
3.5
42
79
9
133
24
24
18
32
1.97
42014076--42014127
21
2.5
21
87
9
79
5
44
15
34
1.70
42016940--42016986
12
4.2
12
76
15
55
31
2
19
46
1.61
42016933--42016988
21
2.7
21
91
0
85
32
1
19
46
1.61
42016893--42017134
91
2.7
88
75
13
217
36
1
17
44
1.59
42017106--42017142
9
4.1
9
96
0
65
35
2
21
40
1.68
42017062--42017154
49
1.9
47
85
12
127
39
2
18
39
1.63
42017134--42017209
39
1.9
40
94
2
136
39
9
15
35
1.80
42017141--42017205
22
3.2
21
64
28
50
41
10
15
32
1.81
42017205--42017319
9
12.6
9
76
14
76
29
0
21
48
1.50
42017207--42017313
18
5.8
18
76
16
103
30
0
20
48
1.50
42017201--42017319
27
4.7
27
79
14
153
30
0
21
47
1.51
42019854--42019917
20
3.5
20
66
33
63
50
3
1
45
1.27
42019854--42019934
33
2.9
27
82
14
76
49
4
1
44
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42020291--42020338
7
7.0
7
78
4
53
29
45
0
25
1.53
42020291--42020344
27
2.0
27
85
0
72
31
46
0
22
1.52
42020296--42020334
20
2.0
20
89
0
60
28
48
0
23
1.51
42022013--42022197
40
4.6
39
83
5
203
23
22
27
25
2.00
42022013--42022197
79
2.3
81
83
7
227
23
22
27
25
2.00
42022014--42022230
79
2.7
79
80
7
192
25
22
27
24
2.00
42029418--42029602
79
2.3
81
84
7
236
24
22
27
25
2.00
42029419--42029602
40
4.6
40
83
9
216
24
22
27
25
2.00
42029419--42029635
79
2.7
79
81
7
201
25
22
27
24
2.00
42031130--42031171
15
2.9
15
86
6
52
30
45
0
23
1.53
42031112--42031196
35
2.4
35
82
3
109
35
44
1
18
1.58
42031205--42031289
39
2.2
39
86
0
116
47
20
5
27
1.73
42035863--42035887
12
2.1
12
100
0
50
48
0
0
52
1.00
42035926--42036023
37
2.6
39
76
20
104
51
3
3
42
1.33
42042492--42042546
26
2.1
26
96
0
101
43
10
14
30
1.80
42043275--42043302
10
2.8
10
100
0
56
32
28
10
28
1.90
42045043--42045078
5
6.8
5
87
12
54
55
0
0
44
0.99
42045038--42045078
15
2.5
17
84
15
59
51
2
0
46
1.14
42056745--42056783
5
7.8
5
85
8
53
76
0
5
17
0.96
42056746--42056783
14
2.6
14
91
8
58
76
0
5
18
0.97
42058280--42058308
14
2.0
15
93
6
51
20
0
27
51
1.47
42067663--42067694
16
1.9
17
93
6
57
34
0
15
50
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42068922--42069041
44
2.8
43
80
7
136
47
8
10
34
1.67
42069316--42069377
3
20.7
3
100
0
124
32
0
0
67
0.91
42075213--42075410
50
3.8
50
81
4
207
23
27
20
27
1.99
42080593--42080632
11
3.6
11
93
6
64
22
35
0
42
1.54
42081814--42081838
7
3.6
7
100
0
50
28
0
12
60
1.32
42082489--42082528
18
2.2
18
95
0
71
22
30
7
40
1.81
42082734--42083205
115
4.1
115
97
0
883
39
9
7
43
1.64
42082734--42083205
229
2.1
231
97
0
885
39
9
7
43
1.64
42086841--42086870
14
2.1
14
100
0
60
20
6
23
50
1.71
42089668--42089707
16
2.5
16
91
0
62
47
2
7
42
1.45
42089780--42089807
9
3.1
9
100
0
56
32
0
10
57
1.33
42089700--42089873
68
2.6
68
96
3
320
41
5
7
45
1.54
42089848--42089891
9
5.1
9
89
10
74
31
0
11
56
1.35
42089845--42089882
16
2.4
16
95
0
67
34
0
10
55
1.34
42090382--42090433
9
5.8
9
88
0
68
11
38
13
36
1.81
42092577--42092891
92
3.3
92
93
3
504
40
10
11
37
1.75
42095212--42095258
20
2.3
20
82
10
60
70
8
4
17
1.29
42095271--42095305
17
2.1
17
100
0
70
71
11
0
17
1.14
42098537--42098707
51
3.4
50
75
6
182
29
14
26
30
1.95
42102352--42102403
18
2.9
18
94
0
86
36
13
9
40
1.77
42104323--42104348
3
8.7
3
100
0
52
0
0
65
34
0.93
42113749--42114141
193
2.0
193
95
0
696
27
25
15
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42116590--42116629
17
2.2
17
86
8
53
52
12
5
30
1.60
42135263--42135302
5
7.6
5
97
2
62
77
0
0
22
0.77
42151183--42151252
26
2.5
28
77
15
72
51
5
10
32
1.59
42151475--42151542
3
22.7
3
79
11
77
60
2
2
33
1.27
42154489--42154524
17
2.1
17
100
0
72
30
5
22
41
1.76
42155121--42155145
11
2.3
11
100
0
50
64
8
20
8
1.46
42157435--42157540
30
3.7
27
75
14
95
33
4
1
60
1.28
42157429--42157534
31
3.6
28
76
12
88
32
4
2
60
1.32
42157452--42157555
10
10.6
10
76
9
72
32
2
0
63
1.16
42157435--42157561
58
2.2
58
84
8
161
30
4
1
62
1.25
42157471--42157585
9
12.4
9
74
14
67
27
3
0
67
1.12
42157452--42157571
28
4.1
29
78
11
122
30
3
0
65
1.15
42157928--42157960
15
2.1
17
88
11
52
60
0
0
39
0.97
42166825--42166870
15
3.1
15
81
9
58
52
0
0
47
1.00
42166991--42167053
32
2.0
32
87
0
90
44
6
6
42
1.55
42168891--42168938
19
2.5
19
83
9
62
39
4
0
56
1.19
42168936--42168979
22
2.1
20
83
8
52
36
6
2
54
1.40
42169265--42169344
29
2.7
29
72
12
83
32
7
1
58
1.34
42170575--42170610
19
2.0
17
89
10
54
44
16
5
33
1.71
42176791--42176852
25
2.5
26
82
7
76
24
30
14
30
1.95
42181598--42181631
17
1.9
18
88
5
52
41
2
0
55
1.15
42185866--42186006
40
3.5
40
81
1
158
31
16
28
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42186203--42186247
21
2.1
22
84
12
58
55
15
8
20
1.66
42196788--42196818
15
2.1
15
100
0
62
29
25
19
25
1.99
42199838--42199900
29
2.2
29
85
5
83
53
6
23
15
1.65
42199851--42199912
29
2.1
29
94
5
108
46
6
24
22
1.75
42200396--42200454
24
2.5
24
94
0
100
18
28
18
33
1.95
42200396--42200481
24
3.6
22
85
7
73
17
26
18
37
1.93
42200466--42200536
24
2.9
24
73
10
63
19
25
21
33
1.97
42205653--42205690
20
1.9
20
84
10
51
42
7
10
39
1.69
42215833--42215881
21
2.3
22
75
3
55
28
32
0
38
1.57
42215910--42216017
48
2.3
47
84
6
146
29
49
2
18
1.62
42216873--42216997
29
4.4
29
71
9
87
52
29
2
16
1.56
42217146--42217176
2
15.5
2
100
0
62
0
48
0
51
1.00
42232186--42232251
20
3.3
20
72
4
71
54
9
16
19
1.68
42232175--42232256
39
2.1
39
97
0
155
52
7
19
20
1.70
42232174--42232232
19
3.1
19
70
4
64
54
6
20
18
1.66
42232431--42232456
4
6.5
4
100
0
52
23
0
0
76
0.78
42232452--42232486
3
11.7
3
100
0
70
31
0
0
68
0.90
42233175--42233225
20
2.6
20
81
3
59
41
7
0
50
1.31
42238348--42238384
18
2.2
17
90
9
58
48
0
0
51
1.00
42249786--42249811
12
2.2
12
100
0
52
7
38
23
30
1.83
42252638--42252772
18
8.0
17
69
19
86
39
0
2
57
1.19
42252931--42253023
44
2.1
46
85
4
127
35
26
4
33
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42253013--42253058
16
2.9
16
93
0
74
26
32
2
39
1.68
42252967--42253185
116
1.9
116
82
3
280
32
26
5
35
1.81
42253116--42253150
16
2.3
15
95
5
61
34
17
0
48
1.47
42253121--42253174
16
3.4
16
86
0
72
33
24
1
40
1.66
42253391--42253428
19
2.0
19
89
0
58
63
5
0
31
1.17
42253351--42253557
28
7.5
27
68
20
108
62
4
0
32
1.21
42253394--42253462
34
2.0
34
83
10
88
66
4
0
28
1.10
42253507--42253567
19
3.2
20
81
9
65
65
6
3
24
1.32
42253536--42253622
45
1.9
45
83
4
113
56
3
2
37
1.29
42253591--42253735
31
5.2
29
68
20
80
56
5
0
37
1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216