genome.fa.s15.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  204  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63244248--63244292	22	2.0	24	86	8	67	44	11	4	40	1.60
63246790--63247076	51	5.6	51	87	3	366	29	24	16	29	1.96
63247546--63247610	30	2.2	30	82	0	76	32	23	7	36	1.83
63250366--63250391	11	2.4	11	100	0	52	0	11	7	80	0.89
63251061--63251085	10	2.5	10	100	0	50	52	0	32	16	1.44
63256549--63257016	120	3.9	120	98	0	893	43	2	6	47	1.41
63257164--63257254	45	2.0	45	85	2	121	37	28	6	27	1.82
63257235--63257303	16	4.2	16	92	3	120	36	37	1	24	1.65
63257235--63257303	33	2.1	32	94	2	120	36	37	1	24	1.65
63265710--63265752	21	2.0	22	95	4	79	74	2	0	23	0.93
63272475--63272503	15	1.9	15	100	0	58	20	27	17	34	1.95
63277446--63277472	14	1.9	14	100	0	54	40	0	0	59	0.98
63280323--63280369	3	15.7	3	100	0	94	68	0	0	31	0.90
63286640--63286677	14	2.7	14	88	8	51	42	47	0	10	1.38
63287584--63287629	12	3.8	12	79	0	56	34	2	54	8	1.43
63287893--63287940	25	2.0	25	83	4	62	43	14	10	31	1.79
63293948--63293992	23	1.9	24	86	4	65	53	0	4	42	1.21
63295384--63295408	3	8.3	3	100	0	50	36	0	0	64	0.94
63297741--63297765	7	3.6	7	100	0	50	40	0	0	60	0.97
63299952--63299987	16	2.2	17	90	5	56	50	0	0	50	1.00
63305895--63305925	15	2.1	15	100	0	62	19	29	12	38	1.89
63317260--63317324	28	2.2	28	84	13	78	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63324660--63324688	14	2.0	15	93	6	51	27	0	20	51	1.47
63324859--63324915	28	2.0	28	86	6	80	56	0	7	36	1.27
63325509--63325685	64	2.8	64	85	6	220	32	6	16	43	1.75
63325819--63325907	41	2.2	41	97	0	169	25	17	21	34	1.96
63329485--63329916	51	8.5	51	75	7	274	27	15	26	31	1.95
63329484--63329718	102	2.3	102	91	2	373	27	14	26	31	1.94
63329485--63329862	151	2.5	153	81	5	419	27	14	26	31	1.95
63329689--63329918	101	2.3	102	84	7	283	24	15	26	32	1.95
63334527--63334581	21	2.6	21	82	0	74	27	9	34	29	1.87
63334693--63334740	19	2.6	19	83	3	62	56	0	2	41	1.11
63359446--63359634	93	2.0	92	89	1	288	34	4	6	55	1.45
63359663--63359693	9	3.6	9	91	8	55	35	0	0	64	0.94
63362281--63362381	50	2.0	50	94	0	175	40	6	15	36	1.75
63362811--63363303	123	4.0	124	89	3	681	26	17	16	39	1.91
63362827--63363303	249	1.9	246	86	3	681	26	17	16	40	1.90
63363378--63363464	34	2.6	33	84	10	115	43	13	1	41	1.52
63379220--63379456	118	2.0	118	100	0	474	27	16	30	26	1.96
63386537--63386565	3	9.7	3	100	0	58	34	0	0	65	0.93
63386649--63386678	6	5.0	6	91	0	51	50	0	3	46	1.18
63389456--63389486	2	15.5	2	100	0	62	51	0	48	0	1.00
63389888--63389912	2	12.5	2	100	0	50	0	52	0	48	1.00
63393640--63393671	15	2.1	16	88	11	50	37	0	3	59	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63393777--63393831	25	2.1	26	80	12	60	41	1	5	50	1.36
63394701--63394746	6	7.7	6	85	0	56	34	19	2	43	1.63
63397938--63397985	19	2.6	18	83	9	53	66	0	6	27	1.15
63398899--63398925	5	5.4	5	100	0	54	37	0	0	62	0.95
63400053--63400108	24	2.3	23	77	14	60	71	0	16	12	1.15
63400068--63400101	15	2.2	16	89	5	52	79	0	14	5	0.91
63411418--63411482	11	6.0	11	81	3	78	21	30	0	47	1.51
63411420--63411482	32	2.0	32	83	0	81	22	30	0	47	1.51
63415039--63415070	9	3.6	9	95	0	55	40	25	9	25	1.85
63415038--63415087	18	2.8	18	78	0	55	46	22	6	26	1.74
63416151--63416203	6	8.8	6	100	0	106	15	0	67	16	1.23
63423675--63423725	18	2.7	19	78	6	59	35	19	0	45	1.51
63432255--63432291	13	2.8	14	84	12	51	43	24	0	32	1.55
63432783--63432858	30	2.6	29	77	6	82	50	9	14	26	1.73
63433329--63433408	42	1.9	42	92	0	133	56	7	8	27	1.57
63435175--63435220	24	1.9	24	82	8	58	41	8	0	50	1.33
63435174--63435424	124	2.0	125	99	0	495	33	9	15	42	1.78
63436866--63436901	11	3.2	11	88	4	54	19	33	2	44	1.65
63440004--63440068	3	21.3	3	76	14	62	29	6	3	61	1.35
63452369--63452748	44	8.8	43	74	10	224	29	21	22	26	1.99
63454416--63454477	3	20.3	3	75	15	56	29	6	3	61	1.37
63458979--63459020	21	2.1	20	82	8	50	54	2	38	4	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63467047--63467143	28	3.4	28	71	18	81	26	13	11	48	1.76
63467532--63467675	60	2.4	60	79	4	148	49	11	15	24	1.77
63471197--63471258	10	6.5	10	73	17	51	59	0	4	35	1.19
63471197--63471258	18	3.3	19	78	17	58	59	0	4	35	1.19
63471197--63471272	29	2.6	28	79	6	80	59	0	6	34	1.24
63472115--63472240	20	6.8	18	64	14	60	46	14	4	34	1.66
63472121--63472255	17	7.4	17	64	14	63	48	12	4	34	1.61
63472115--63472260	37	3.9	37	94	0	256	46	13	4	34	1.65
63476473--63476511	6	6.5	6	81	0	51	46	2	28	23	1.65
63477150--63477190	19	2.2	18	86	4	55	12	34	2	51	1.52
63477150--63477190	18	2.2	19	83	12	50	12	34	2	51	1.52
63479371--63479407	9	4.1	9	89	0	56	48	13	8	29	1.71
63483740--63483797	28	2.2	27	84	9	75	65	12	10	12	1.47
63485306--63485358	18	2.9	18	83	8	63	47	0	1	50	1.12
63488514--63488540	12	2.2	12	100	0	54	44	0	7	48	1.31
63488861--63488913	21	2.5	21	90	0	79	30	35	9	24	1.87
63501619--63501674	18	3.1	18	84	0	76	8	8	46	35	1.67
63504390--63504443	24	2.3	23	80	3	63	46	1	0	51	1.11
63506793--63506831	19	2.0	20	95	5	71	30	0	0	69	0.89
63506801--63506851	26	1.9	27	96	4	95	25	0	0	74	0.82
63506804--63506861	26	2.2	26	84	6	73	24	0	5	70	1.07
63510134--63510201	35	2.0	34	88	2	100	38	16	10	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63510497--63510529	17	1.9	17	88	11	50	60	0	0	39	0.97
63511815--63511872	30	1.9	30	83	13	75	36	8	1	53	1.42
63513323--63513410	35	2.5	35	80	8	99	39	0	0	60	0.97
63513348--63513408	25	2.6	24	85	12	74	40	0	0	59	0.98
63513358--63513416	26	2.3	25	80	11	66	38	0	0	61	0.96
63513806--63513867	21	3.0	21	73	17	76	62	0	12	24	1.30
63523730--63523773	15	3.1	14	84	9	54	20	0	0	79	0.73
63523730--63523773	7	6.4	7	92	2	63	20	0	0	79	0.73
63523781--63523830	19	2.4	21	83	12	68	36	0	4	60	1.16
63530350--63530416	29	2.3	30	79	7	75	22	16	19	41	1.90
63530422--63530511	42	2.2	41	78	9	94	24	26	26	22	2.00
63542258--63542287	15	2.0	15	100	0	60	53	6	0	40	1.27
63542335--63542365	16	1.9	16	93	0	53	48	0	0	51	1.00
63543902--63544199	126	2.4	126	90	0	470	32	18	21	27	1.97
63549705--63549769	11	6.1	10	76	16	60	46	3	27	23	1.67
63549716--63549769	22	2.5	22	85	5	76	46	3	27	22	1.69
63552892--63552956	32	2.1	32	85	2	87	23	12	10	53	1.69
63553794--63553835	18	2.3	18	87	0	57	9	26	33	30	1.88
63566781--63566834	18	3.0	18	73	10	56	70	7	0	22	1.12
63567776--63567882	41	2.6	41	84	11	121	23	3	28	44	1.70
63568700--63568756	24	2.4	24	84	0	69	36	7	0	56	1.27
63576299--63577385	216	5.0	216	86	1	1356	27	25	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63576439--63577491	432	2.4	429	84	4	1192	28	25	14	31	1.95
63576314--63577543	648	1.9	646	80	5	1428	27	25	14	31	1.95
63583948--63584004	28	2.0	30	86	10	84	54	1	12	31	1.48
63584099--63584153	27	2.0	27	100	0	110	30	3	21	43	1.70
63585360--63585410	17	3.0	17	97	0	93	39	11	13	35	1.82
63587944--63587991	21	2.2	22	78	14	55	52	0	2	45	1.12
63588185--63588237	14	3.8	15	73	16	51	52	5	1	39	1.36
63596965--63597004	21	1.9	21	94	0	71	20	10	12	57	1.63
63597301--63597339	9	4.3	9	87	9	53	48	0	0	51	1.00
63597307--63597336	8	3.6	8	95	4	51	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216