genome.fa.s15.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  150  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47340426--47340459	4	8.0	4	90	9	50	23	0	2	73	0.97
47340409--47340468	22	2.7	22	73	19	61	26	0	6	66	1.16
47346898--47346931	4	8.0	4	90	9	50	23	0	2	73	0.97
47346881--47346940	22	2.7	22	73	19	61	26	0	6	66	1.16
47350570--47350595	11	2.4	11	100	0	52	65	0	19	15	1.27
47351974--47352117	25	5.8	25	76	3	146	34	18	16	29	1.93
47352458--47352719	129	2.0	129	89	4	404	28	13	18	39	1.89
47368845--47368989	20	7.2	20	68	12	82	33	17	36	12	1.87
47368837--47369065	40	5.8	40	83	2	273	36	17	32	13	1.89
47368837--47369065	79	2.9	80	84	1	264	36	17	32	13	1.89
47368905--47369049	20	7.3	20	64	13	75	37	17	32	12	1.88
47374663--47374801	40	3.5	40	80	0	134	18	29	16	35	1.93
47374786--47374870	20	4.2	20	71	5	73	14	35	17	32	1.90
47384721--47384767	24	2.1	23	84	11	62	14	46	2	36	1.57
47393505--47393578	25	3.0	25	80	9	80	24	21	17	36	1.95
47395439--47395618	80	2.3	80	83	10	210	27	27	20	23	1.99
47395436--47395618	40	4.6	40	81	8	187	28	27	20	24	1.99
47399420--47399600	80	2.3	80	83	9	219	27	27	20	23	1.99
47399417--47399600	40	4.6	40	81	7	196	28	27	20	23	1.99
47400610--47400636	14	1.9	14	100	0	54	0	7	3	88	0.61
47403619--47403948	49	6.8	47	80	9	290	32	20	24	22	1.98
47403619--47403948	97	3.4	96	83	8	393	32	20	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47403619--47403948	50	6.8	48	80	8	346	32	20	24	22	1.98
47407723--47407793	5	13.2	5	74	14	52	19	21	0	59	1.38
47407710--47407762	21	2.5	21	78	0	52	18	13	3	64	1.43
47407725--47407766	16	2.6	16	88	0	57	21	14	0	64	1.29
47407723--47407766	21	2.1	21	86	0	61	20	15	0	63	1.31
47407800--47407864	21	3.1	21	76	17	64	27	7	1	63	1.31
47407798--47407891	42	2.2	43	79	9	111	26	9	2	61	1.38
47417819--47417843	12	2.1	12	100	0	50	44	8	8	40	1.63
47417859--47417893	18	1.9	18	88	11	54	34	0	25	40	1.56
47421284--47421319	18	2.0	18	100	0	72	38	11	22	27	1.88
47421752--47422239	243	2.0	243	98	0	940	32	6	23	37	1.80
47424379--47424430	4	12.8	4	80	15	54	23	1	0	75	0.91
47424379--47424432	10	5.3	10	75	20	58	22	1	0	75	0.89
47424380--47424429	7	7.3	7	78	17	52	24	2	0	74	0.93
47433119--47433148	15	2.1	15	93	6	53	13	0	0	86	0.57
47436316--47436627	153	2.0	154	89	3	477	38	14	14	32	1.87
47439331--47439365	17	2.1	17	94	0	61	37	20	5	37	1.76
47442651--47442732	26	3.2	26	69	27	84	23	13	29	34	1.93
47442588--47442732	50	2.9	50	85	5	202	24	14	28	32	1.94
47442956--47442987	16	2.0	16	93	0	55	59	0	15	25	1.36
47445697--47445789	47	2.0	48	84	2	125	25	15	26	32	1.95
47448990--47449021	16	2.0	16	93	0	55	59	0	15	25	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47459762--47459871	25	4.2	25	70	15	71	10	19	15	55	1.68
47468123--47468176	17	3.2	17	70	19	58	24	20	1	53	1.55
47468528--47468580	11	4.8	11	73	0	52	39	45	3	11	1.58
47470669--47470767	42	2.4	42	78	10	112	21	31	21	26	1.98
47470710--47470832	54	2.3	54	82	4	140	20	29	24	26	1.99
47471278--47471302	12	2.1	12	100	0	50	48	0	24	28	1.52
47474912--47474987	20	3.8	19	71	10	62	30	23	31	14	1.94
47474898--47474993	40	2.4	40	75	16	99	30	21	32	15	1.95
47474995--47475136	40	3.5	40	87	0	185	32	16	29	21	1.95
47476567--47476648	42	2.0	41	92	2	137	36	24	23	15	1.94
47476461--47476839	95	4.0	95	88	2	474	37	23	20	18	1.94
47476696--47476838	42	3.1	42	64	22	99	33	23	23	18	1.97
47477669--47477731	27	2.4	26	78	7	65	26	26	22	23	2.00
47477727--47477839	52	2.2	53	88	1	174	30	32	18	18	1.95
47477900--47477969	27	2.6	27	90	0	104	28	35	15	20	1.93
47482483--47482538	29	1.9	29	100	0	112	23	21	17	37	1.94
47492139--47492182	20	2.2	20	91	0	70	43	18	4	34	1.70
47500784--47500809	13	2.0	13	100	0	52	30	15	15	38	1.88
47501388--47501427	19	2.0	21	85	9	57	20	7	7	65	1.43
47523673--47523728	22	2.4	22	79	8	58	12	0	39	48	1.41
47524853--47524901	21	2.3	20	80	10	53	30	4	2	63	1.24
47524885--47524917	13	2.4	14	90	5	50	30	3	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47527730--47527812	40	2.1	40	90	2	132	27	21	28	21	1.99
47528174--47528203	16	1.9	15	93	6	51	13	0	6	80	0.91
47545561--47546115	47	11.6	47	93	1	858	28	29	8	33	1.86
47545561--47546115	143	3.9	141	92	2	858	28	29	8	33	1.86
47550803--47550828	6	4.3	6	100	0	52	46	0	53	0	1.00
47551022--47551073	23	2.3	23	89	0	77	51	13	1	32	1.52
47556775--47557015	43	5.6	43	76	9	154	29	29	15	25	1.96
47559905--47559948	21	2.1	21	83	8	54	25	2	50	22	1.61
47561468--47561502	14	2.5	14	85	0	52	28	45	0	25	1.54
47561535--47561567	15	2.3	15	89	5	50	36	30	0	33	1.58
47561608--47561686	22	3.3	22	66	24	61	45	29	0	25	1.54
47561599--47561707	50	2.2	50	98	0	209	45	28	0	25	1.54
47561616--47561695	18	4.7	18	69	27	75	46	26	0	27	1.53
47563194--47563239	23	2.0	23	95	0	83	26	23	17	32	1.97
47563197--47563246	23	2.2	23	88	0	73	26	22	20	32	1.98
47572831--47572944	56	2.0	56	100	0	228	31	30	10	27	1.90
47574291--47574404	53	2.2	53	88	3	167	35	14	1	48	1.54
47574715--47574755	17	2.4	18	80	19	52	41	4	0	53	1.22
47579168--47579679	76	6.9	75	76	6	382	21	20	16	41	1.90
47579290--47579420	65	2.0	65	81	0	154	19	19	19	41	1.91
47579217--47579635	140	2.9	140	80	5	390	21	20	16	41	1.90
47581561--47581585	12	2.1	12	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47581719--47581799	39	2.2	36	80	6	90	24	23	16	35	1.94
47583247--47583513	138	1.9	136	87	1	390	38	7	9	44	1.66
47588159--47588201	22	2.0	22	95	0	77	39	6	16	37	1.75
47599879--47599950	34	2.1	34	100	0	144	43	16	8	31	1.78
47605569--47605817	30	8.4	30	76	8	152	23	23	12	40	1.88
47605567--47605701	60	2.2	60	84	5	184	26	22	11	39	1.88
47605687--47605760	29	2.5	30	84	2	96	17	28	9	44	1.80
47606605--47606634	16	1.9	15	93	6	51	40	13	0	46	1.43
47606952--47606990	20	2.0	20	100	0	78	25	20	30	23	1.98
47618202--47618319	40	3.0	40	81	5	139	22	25	17	34	1.96
47630381--47630420	18	2.2	18	90	0	62	45	0	37	17	1.49
47635732--47635795	23	3.0	21	86	10	94	23	32	0	43	1.54
47638110--47638147	17	2.2	17	90	0	58	39	5	0	55	1.23
47638081--47638263	55	3.2	55	69	20	135	40	4	6	48	1.49
47641283--47641575	126	2.3	125	89	2	444	28	20	18	32	1.96
47641608--47641911	96	3.2	96	87	3	398	40	20	2	35	1.68
47641938--47642007	21	3.4	20	80	5	77	51	38	0	10	1.36
47641959--47641995	7	5.3	7	96	0	65	56	40	0	2	1.13
47659143--47659329	40	4.7	40	81	9	211	24	27	22	25	2.00
47666402--47666585	40	4.6	40	76	10	162	25	27	21	26	1.99
47666430--47666533	39	2.6	40	89	1	147	25	26	19	27	1.99
47668495--47668537	20	2.2	20	100	0	86	27	13	25	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47672786--47673073	50	5.7	50	80	7	289	21	27	23	27	1.99
47672833--47673067	99	2.3	104	86	6	311	21	27	24	26	1.99
47681874--47681907	8	4.5	8	85	14	54	38	26	0	35	1.57
47681874--47681907	14	2.3	14	90	10	50	38	26	0	35	1.57
47687831--47687878	8	6.2	8	85	9	73	12	0	25	62	1.30
47689923--47690129	91	2.3	91	87	0	279	44	4	4	46	1.44
47690044--47690104	28	2.2	28	85	5	81	45	1	3	49	1.28
47690156--47690464	59	5.2	58	65	21	172	42	2	4	50	1.36
47690145--47690557	120	3.4	120	94	1	704	42	1	5	49	1.36
47690390--47690441	15	3.6	15	80	12	56	44	0	1	53	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216