genome.fa.s15.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  180  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56298831--56298880	18	2.6	19	81	6	57	24	28	0	48	1.52
56298854--56298938	43	2.0	43	92	0	143	23	25	3	47	1.68
56303787--56303840	25	2.2	25	89	0	81	16	29	38	14	1.89
56305140--56305184	25	1.9	22	86	13	63	37	28	13	20	1.90
56305141--56305190	23	2.2	23	82	13	59	38	30	12	20	1.88
56305676--56305725	18	2.6	19	81	6	57	24	28	0	48	1.52
56305699--56305783	43	2.0	43	92	0	143	23	25	3	47	1.68
56315085--56315115	13	2.3	14	94	5	55	32	16	16	35	1.91
56315183--56315257	31	2.4	31	82	14	93	41	6	6	45	1.57
56315206--56315264	31	2.0	29	86	6	82	45	8	3	42	1.51
56334122--56334158	3	11.7	3	88	11	56	0	35	0	64	0.94
56338044--56338095	24	2.2	24	89	0	77	36	3	9	50	1.54
56340528--56340669	23	6.0	23	74	12	92	53	5	8	32	1.54
56340529--56340696	24	7.1	23	76	11	108	52	4	8	33	1.52
56340661--56340728	24	2.8	24	76	12	68	57	2	5	33	1.38
56348182--56348233	24	2.2	24	89	0	77	36	3	9	50	1.54
56352764--56352801	10	3.9	10	89	6	60	44	0	5	50	1.24
56352764--56352803	19	2.1	19	95	0	71	42	0	5	52	1.23
56353903--56354169	120	2.2	120	80	3	288	30	11	22	35	1.90
56371815--56371857	6	7.0	6	85	15	61	79	2	0	18	0.85
56371816--56371859	19	2.3	19	88	7	63	79	2	0	18	0.83
56371816--56371858	20	2.2	19	87	4	59	81	2	0	16	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56371815--56371875	29	2.3	25	86	11	77	73	1	0	24	0.92
56373524--56373583	30	2.0	30	83	3	75	43	0	38	18	1.50
56373797--56373833	9	4.1	9	92	0	65	29	10	13	45	1.77
56380080--56380119	20	2.0	20	90	0	62	50	0	10	40	1.36
56390567--56390713	56	2.6	56	87	4	215	24	6	16	52	1.68
56391602--56391653	26	2.0	26	88	3	79	50	3	0	46	1.20
56391801--56391855	16	3.4	16	79	0	65	32	21	5	40	1.76
56396553--56396634	32	2.6	32	90	3	121	51	17	2	29	1.58
56396588--56396634	16	2.9	16	69	12	51	53	14	4	27	1.60
56400183--56400213	5	6.2	5	100	0	62	19	38	0	41	1.51
56403767--56404047	125	2.3	126	85	6	369	28	16	22	32	1.95
56406436--56406468	15	2.3	15	89	5	50	66	6	0	27	1.15
56406560--56406611	10	5.3	10	75	11	54	65	0	0	34	0.93
56406567--56406631	33	2.0	32	85	11	89	58	1	1	38	1.17
56406663--56406762	52	1.9	52	85	0	137	34	0	32	34	1.58
56406715--56406783	22	3.1	22	89	0	102	39	0	27	33	1.57
56416359--56416395	2	18.5	2	100	0	74	51	0	48	0	1.00
56429399--56429439	21	2.0	21	85	9	57	26	2	4	65	1.25
56435626--56435669	21	2.0	21	86	4	61	61	9	2	27	1.38
56436258--56436289	15	2.0	17	88	11	50	56	9	0	34	1.32
56438846--56438896	24	2.1	24	82	13	61	72	0	3	23	1.01
56440413--56440526	44	2.6	44	80	8	133	27	22	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56440544--56440652	45	2.4	45	85	7	134	30	20	19	30	1.97
56440795--56440915	44	2.8	44	83	7	156	29	28	16	24	1.97
56440916--56441404	88	5.6	88	92	0	791	19	23	28	28	1.98
56441080--56441399	44	7.3	44	63	8	175	19	23	30	27	1.98
56450506--56450536	15	2.1	15	93	0	53	35	16	6	41	1.74
56463893--56463923	14	2.2	14	94	0	53	64	3	6	25	1.33
56468572--56468639	31	2.2	31	83	0	91	39	8	17	33	1.81
56470712--56470782	8	8.8	8	73	14	65	60	0	1	38	1.06
56473614--56473661	19	2.5	19	86	6	62	47	0	27	25	1.52
56474571--56474657	42	2.1	42	86	0	120	25	20	32	21	1.98
56474993--56475086	49	1.9	49	91	0	152	43	7	23	25	1.79
56475997--56476029	6	5.5	6	100	0	66	48	0	0	51	1.00
56477059--56477188	67	1.9	67	88	0	197	33	16	16	33	1.92
56479645--56479677	5	6.6	5	100	0	66	21	0	39	39	1.53
56481227--56481291	22	2.8	25	75	11	66	61	4	0	33	1.16
56481274--56481348	36	2.1	35	92	2	123	42	5	2	49	1.39
56511075--56511117	21	2.0	21	90	0	68	69	2	2	25	1.12
56521570--56521600	9	3.4	9	90	0	53	38	22	12	25	1.90
56523235--56523314	36	2.3	35	89	8	126	43	18	5	32	1.72
56539665--56539913	50	4.8	50	84	3	282	21	29	22	26	1.99
56539664--56539913	100	2.4	104	86	5	337	21	29	22	26	1.99
56540008--56540039	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56540251--56540308	30	1.9	30	86	6	82	29	24	3	43	1.70
56545958--56546121	28	5.9	28	97	0	285	26	10	27	35	1.90
56550548--56550796	50	4.8	50	85	3	300	21	29	22	26	1.99
56550547--56550796	100	2.4	104	88	5	355	21	29	22	26	1.99
56550891--56550922	13	2.5	13	94	0	55	56	12	0	31	1.37
56551134--56551191	30	1.9	30	86	6	82	29	24	3	43	1.70
56563528--56563552	13	1.9	13	100	0	50	32	4	24	40	1.73
56568505--56568644	40	3.5	40	74	8	108	30	25	17	26	1.97
56568803--56568859	24	2.3	24	80	17	64	49	17	0	33	1.47
56569526--56569583	16	3.7	15	84	6	71	3	18	3	74	1.11
56587824--56587849	8	3.2	8	100	0	52	53	11	23	11	1.69
56595595--56596054	234	2.0	233	94	0	812	28	16	21	33	1.95
56597599--56597628	16	1.9	16	93	6	53	46	20	10	23	1.80
56601925--56602024	28	3.6	28	87	2	130	34	12	26	28	1.92
56602144--56602207	27	2.4	27	86	0	83	39	12	23	25	1.90
56604637--56604719	38	2.2	38	95	0	148	42	12	8	37	1.72
56622079--56622110	16	1.9	17	93	6	57	50	34	0	15	1.45
56623235--56623292	23	2.5	24	80	8	66	31	5	6	56	1.47
56627626--56627659	6	5.7	6	100	0	68	70	14	0	14	1.17
56627610--56627662	12	4.9	10	86	8	61	75	13	0	11	1.05
56627644--56627717	28	2.6	29	85	8	89	70	10	9	9	1.35
56627644--56627722	30	2.8	27	81	11	86	70	10	8	10	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56628590--56628623	7	5.0	7	89	7	52	67	0	17	14	1.23
56628591--56628623	13	2.4	14	95	5	59	66	0	18	15	1.25
56630157--56630607	50	9.0	50	70	7	270	32	23	20	24	1.98
56630132--56630616	100	4.8	99	85	4	609	32	23	19	24	1.98
56630944--56630975	16	1.9	17	93	6	57	50	34	0	15	1.45
56631181--56631222	22	2.0	22	85	4	59	71	2	19	7	1.20
56632097--56632154	23	2.5	24	80	8	66	31	5	6	56	1.47
56640785--56640855	24	3.0	24	89	0	97	18	29	19	32	1.96
56640785--56640878	48	2.0	48	81	8	111	18	28	19	34	1.95
56640892--56640948	25	2.3	25	84	6	71	21	26	19	33	1.97
56644727--56644798	23	2.9	24	80	14	67	33	26	0	40	1.56
56644939--56644985	3	16.0	3	77	4	51	59	4	0	36	1.17
56644939--56644985	12	4.0	12	86	5	60	59	4	0	36	1.17
56651977--56652015	20	2.0	20	90	10	62	28	23	2	46	1.65
56652929--56652987	30	2.0	30	93	0	100	57	10	3	28	1.48
56653549--56653585	18	2.1	18	100	0	74	40	10	10	37	1.75
56665356--56665469	38	3.2	37	64	22	89	41	10	9	38	1.72
56665351--56665487	69	2.0	69	94	0	238	39	8	11	40	1.73
56670499--56670592	39	2.4	39	87	7	129	37	21	21	20	1.95
56670628--56670868	41	5.9	41	84	3	290	23	21	26	28	1.99
56670628--56670868	123	2.0	122	85	4	324	23	21	26	28	1.99
56671963--56671994	14	2.2	15	94	5	57	31	0	31	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56672257--56672307	14	3.6	14	75	0	57	17	0	43	39	1.49
56672447--56672749	150	2.0	148	89	6	470	39	15	13	31	1.87
56673069--56673100	16	2.0	16	100	0	64	31	18	18	31	1.95
56674301--56674439	43	3.2	43	78	7	147	28	27	19	24	1.98
56674323--56674458	43	3.2	43	84	2	184	28	30	18	22	1.97
56678271--56678499	125	1.8	124	85	4	327	42	25	0	31	1.61
56678521--56678557	14	2.5	15	95	4	67	35	35	0	29	1.58
56678758--56678827	30	2.3	30	76	9	72	31	4	2	61	1.30
56678954--56679064	40	2.7	40	87	8	161	29	25	22	22	1.99
56679122--56679230	40	2.8	39	87	4	148	16	22	24	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216