genome.fa.s15.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  154  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48763841--48764035	78	2.5	80	82	4	216	28	24	12	33	1.92
48765718--48765749	9	3.6	9	95	0	55	43	21	9	25	1.82
48766998--48767028	8	3.9	8	91	0	53	35	0	12	51	1.40
48778437--48778512	29	2.6	29	82	4	89	48	14	11	25	1.77
48781402--48781434	14	2.3	15	90	10	52	48	3	0	48	1.17
48783522--48783548	14	1.9	14	100	0	54	55	0	7	37	1.28
48788507--48788551	22	2.0	22	100	0	90	20	31	13	35	1.91
48788511--48788558	22	2.2	22	92	0	78	18	39	12	29	1.88
48789690--48789882	26	7.3	26	85	1	224	29	27	12	31	1.93
48789662--48789882	78	2.8	79	81	3	239	27	26	13	32	1.93
48794213--48794267	21	2.6	21	83	8	67	25	32	20	21	1.97
48796348--48796470	28	4.4	28	88	2	167	26	12	29	32	1.92
48796373--48796483	28	4.0	27	88	5	91	28	11	27	32	1.92
48800661--48800751	29	3.3	28	70	11	80	32	24	18	24	1.97
48800661--48800793	56	2.4	56	83	7	155	30	24	18	27	1.98
48807890--48807936	12	3.8	12	86	5	67	12	6	10	70	1.33
48807890--48807933	13	3.5	13	90	6	72	11	4	9	75	1.19
48808927--48808973	23	2.1	23	84	7	62	51	12	4	31	1.59
48812536--48812597	28	2.2	29	86	11	85	11	14	6	67	1.40
48816952--48816981	15	2.0	15	93	0	51	30	6	20	43	1.77
48819657--48819762	38	2.8	38	86	8	139	30	9	3	56	1.49
48822720--48822771	25	2.0	26	88	3	79	26	3	21	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48823051--48823089	15	2.5	16	84	16	55	61	0	2	35	1.10
48826372--48826539	20	8.6	20	71	13	127	47	5	5	41	1.51
48826383--48826573	57	3.3	57	87	2	258	46	6	5	41	1.53
48826461--48826701	94	2.6	90	77	13	258	44	7	5	41	1.56
48826612--48826718	37	3.1	35	75	22	118	45	11	2	40	1.54
48826807--48827168	9	43.3	9	64	21	130	45	20	3	31	1.66
48826842--48826922	16	4.8	16	75	14	72	40	23	0	35	1.55
48827027--48827164	16	9.0	16	66	20	80	47	19	2	30	1.64
48826999--48827089	25	3.7	25	73	13	82	49	20	3	26	1.64
48827042--48827097	25	2.2	25	90	0	85	44	21	3	30	1.69
48827042--48827163	65	1.9	65	87	0	181	45	19	3	31	1.66
48827086--48827176	25	3.7	25	79	7	96	46	17	2	34	1.61
48830025--48830333	43	7.2	43	88	2	419	19	18	33	29	1.95
48830401--48830442	22	1.9	22	90	0	66	42	28	19	9	1.82
48831045--48831093	21	2.3	21	80	16	57	18	10	14	57	1.65
48835704--48835734	14	2.2	14	100	0	62	29	29	12	29	1.94
48836972--48837019	14	3.5	14	79	20	57	79	8	0	12	0.94
48836971--48837011	15	2.8	15	79	13	50	80	7	0	12	0.90
48836970--48837035	29	2.3	28	80	17	73	77	9	0	13	0.99
48853821--48853859	20	2.0	20	90	10	62	41	12	7	38	1.72
48857251--48857315	27	2.3	29	82	15	82	13	6	6	73	1.21
48865430--48865493	27	2.4	27	89	0	92	35	17	9	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48872905--48873054	27	5.6	27	92	4	200	31	18	16	34	1.93
48875287--48875339	24	2.1	26	86	10	74	52	5	0	41	1.25
48876744--48877449	353	2.0	353	99	0	1385	31	19	21	27	1.98
48880387--48880447	29	2.1	28	91	8	97	29	0	1	68	0.99
48880424--48880490	18	3.5	18	75	15	71	37	1	0	61	1.05
48880402--48880458	29	2.0	29	82	6	71	36	1	0	61	1.07
48880404--48880508	40	2.6	40	91	5	176	34	1	0	63	1.05
48880433--48880499	11	6.4	11	77	18	54	35	2	0	61	1.12
48880922--48881019	48	2.0	48	88	7	146	30	12	18	38	1.87
48883537--48883617	27	3.0	27	74	13	76	28	23	7	40	1.81
48883576--48883654	27	3.0	26	73	12	79	22	22	10	44	1.83
48884401--48884430	15	1.9	16	93	6	53	56	3	0	40	1.16
48885082--48885154	30	2.4	30	74	0	74	34	6	15	43	1.73
48885147--48885280	63	2.2	61	84	9	173	43	6	16	33	1.74
48888728--48888768	20	2.0	20	90	0	64	34	19	14	31	1.92
48889434--48889483	26	1.9	26	87	0	73	52	12	10	26	1.70
48891603--48891696	34	2.8	34	87	6	131	39	0	17	43	1.49
48891790--48892183	126	3.1	126	87	1	540	35	17	17	29	1.92
48895702--48895751	18	2.8	18	96	0	91	48	6	22	24	1.73
48900456--48900527	27	2.7	26	77	14	67	56	1	5	36	1.31
48902575--48902656	16	4.6	16	72	21	56	52	3	1	42	1.26
48902549--48902640	40	2.2	39	81	9	94	51	3	1	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48908564--48908644	38	2.1	38	83	0	99	44	23	14	17	1.86
48908298--48909323	338	3.0	341	90	2	1589	43	16	12	28	1.84
48909244--48909337	38	2.4	38	80	1	107	43	25	12	18	1.85
48914179--48914228	22	2.2	24	82	7	59	40	0	16	44	1.47
48916887--48916950	32	2.0	32	100	0	128	25	15	15	43	1.86
48920893--48920946	28	1.9	28	88	0	81	16	24	38	20	1.92
48924509--48924573	14	4.4	14	84	9	85	66	0	10	23	1.23
48924517--48924574	8	7.8	8	79	14	70	68	0	8	22	1.16
48924509--48924574	22	3.0	22	81	16	82	66	0	10	22	1.22
48924517--48924576	30	2.0	30	96	0	111	68	0	8	23	1.16
48932871--48932922	21	2.4	21	78	15	61	59	1	5	32	1.32
48952707--48952773	30	2.2	30	81	0	80	31	13	29	25	1.94
48954118--48954145	9	3.1	9	100	0	56	46	32	0	21	1.52
48954809--48954873	21	3.1	21	88	2	96	33	26	24	15	1.95
48956049--48956086	3	12.7	3	100	0	76	65	0	0	34	0.93
48956213--48956254	11	3.5	11	82	17	57	54	2	0	42	1.13
48956212--48956247	14	2.6	14	90	0	63	55	2	0	41	1.14
48962265--48962338	21	3.5	22	81	10	91	35	25	22	16	1.95
48962264--48962351	21	4.0	23	79	10	87	34	23	22	19	1.97
48962265--48962351	44	2.0	41	80	6	93	34	24	22	18	1.96
48963510--48963541	3	10.7	3	100	0	64	65	0	0	34	0.93
48963676--48963717	11	3.5	11	82	17	57	54	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48963675--48963710	14	2.6	14	90	0	63	55	2	0	41	1.14
48964319--48964374	23	2.3	24	80	14	62	51	0	1	46	1.11
48965663--48965765	30	3.5	30	83	1	118	36	20	2	39	1.68
48966103--48966143	20	2.0	21	85	9	57	70	0	26	2	0.99
48966125--48966171	18	2.6	19	75	18	55	72	0	25	2	0.96
48966112--48966184	10	7.4	10	74	11	53	68	0	30	1	0.98
48966114--48966193	23	3.4	23	78	11	74	68	0	30	1	0.97
48966262--48966301	21	2.0	19	90	9	62	70	0	30	0	0.88
48966263--48966303	18	2.5	17	85	14	59	73	0	26	0	0.84
48966263--48966369	18	5.8	18	69	18	58	72	0	22	4	1.02
48966323--48966363	12	3.2	12	83	12	55	80	0	19	0	0.71
48966275--48966363	39	2.4	37	78	16	94	73	0	22	4	1.02
48966924--48966971	24	2.0	25	84	12	64	25	0	4	70	1.04
48976631--48976762	50	2.6	50	76	7	133	30	22	28	18	1.98
48976695--48976825	49	2.6	50	83	3	149	29	21	25	23	1.99
48976947--48976984	20	1.9	20	88	0	58	52	2	23	21	1.59
48977055--48977103	24	2.0	24	100	0	98	32	16	8	42	1.77
48983922--48984108	50	3.8	49	80	4	198	27	21	28	22	1.99
48984318--48984370	20	2.7	20	77	11	63	56	5	22	15	1.60
48985527--48986740	76	15.9	76	81	6	1197	27	17	20	34	1.95
48985513--48986737	227	5.3	227	86	4	1491	27	17	20	33	1.95
48985513--48986737	152	8.0	151	82	5	1367	27	17	20	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48986916--48987049	30	4.4	30	85	5	171	38	17	0	43	1.50
48986916--48987049	61	2.2	60	86	1	178	38	17	0	43	1.50
48987436--48987508	27	2.6	27	77	10	76	67	1	28	2	1.13
48987436--48987497	19	3.4	19	73	15	58	69	1	25	3	1.13
48987580--48987659	3	27.0	3	75	14	69	71	0	28	0	0.87
48987581--48987728	44	3.6	43	81	13	177	76	0	23	0	0.79
48987590--48987729	13	10.0	13	77	14	120	77	0	22	0	0.78
48987580--48987729	68	2.2	67	84	11	184	76	0	24	0	0.80
48987590--48987729	7	19.3	7	76	15	117	77	0	22	0	0.78
48987611--48987739	25	5.4	23	74	19	88	78	0	20	1	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216