genome.fa.s15.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  131  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41704855--41705310	159	2.9	159	93	0	770	31	17	25	25	1.97
41705085--41705284	108	1.9	108	81	2	249	30	17	25	28	1.97
41704866--41705287	51	8.0	51	72	9	283	30	17	26	26	1.98
41705360--41705608	138	1.8	138	82	5	324	30	19	20	29	1.97
41705308--41705665	182	2.0	182	84	4	472	31	18	20	28	1.97
41705303--41705750	226	2.0	227	93	0	763	31	18	20	29	1.96
41705303--41705662	44	8.0	44	77	8	314	31	18	21	28	1.97
41705625--41705709	44	1.9	44	81	9	102	34	16	17	31	1.93
41705781--41705864	44	1.9	44	85	0	114	32	17	21	28	1.96
41705829--41705954	45	2.8	44	80	2	135	33	15	23	28	1.94
41705931--41706030	44	2.3	44	82	3	112	33	15	23	29	1.94
41712655--41712693	19	2.1	19	100	0	78	46	15	5	33	1.68
41720431--41720580	27	5.4	28	92	1	223	26	12	28	33	1.92
41720431--41720580	55	2.7	56	90	3	223	26	12	28	33	1.92
41727287--41727328	21	2.0	21	85	0	57	69	2	14	14	1.30
41728768--41728917	27	5.4	28	92	1	223	26	12	28	33	1.92
41728768--41728917	55	2.7	56	90	3	223	26	12	28	33	1.92
41735807--41735956	27	5.4	28	92	1	223	26	12	28	33	1.92
41735807--41735956	55	2.7	56	90	3	223	26	12	28	33	1.92
41744124--41744273	27	5.4	28	92	1	223	26	12	28	33	1.92
41744124--41744273	55	2.7	56	90	3	223	26	12	28	33	1.92
41751025--41751062	19	2.0	19	89	0	58	34	21	7	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41751115--41751156	18	2.3	19	83	4	50	35	4	4	54	1.42
41753165--41753211	17	2.7	17	90	3	67	42	4	6	46	1.48
41753595--41753633	20	2.0	20	90	5	62	56	5	7	30	1.49
41756653--41756717	17	3.5	18	77	10	60	58	3	1	36	1.23
41756971--41757000	16	1.9	15	93	6	51	33	10	0	56	1.32
41758876--41758945	20	3.5	20	84	0	77	35	22	31	10	1.87
41762710--41762978	44	6.2	43	76	2	241	26	24	20	28	1.99
41762736--41762981	87	2.8	87	93	0	411	26	24	20	28	1.99
41762576--41762850	131	2.1	130	82	6	331	25	23	21	29	1.99
41762605--41762978	131	2.9	130	79	4	326	25	24	20	28	1.99
41763083--41763884	44	18.7	42	70	9	327	28	20	17	33	1.96
41763080--41763884	212	3.8	212	88	2	1139	28	20	17	33	1.95
41781211--41781258	20	2.5	20	86	3	62	35	14	27	22	1.93
41784247--41784279	15	2.2	15	94	0	57	12	24	6	57	1.57
41793486--41793648	9	18.6	9	68	21	55	31	3	2	62	1.25
41793555--41793650	10	9.6	10	68	13	54	30	4	2	63	1.24
41793596--41793641	22	2.0	22	84	12	58	32	2	2	63	1.19
41796387--41796480	41	2.3	41	88	1	143	28	18	26	26	1.98
41800198--41800295	46	2.1	46	84	0	124	37	24	16	21	1.93
41810466--41810536	25	2.8	25	82	4	90	22	19	16	40	1.91
41812474--41812514	16	2.6	16	85	14	59	70	12	0	17	1.16
41812482--41812516	15	2.4	14	86	13	52	71	11	0	17	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41813653--41813696	23	2.0	22	82	13	54	29	2	2	65	1.16
41813758--41813838	24	3.5	24	77	5	76	34	6	3	55	1.42
41815377--41815486	37	3.0	37	98	0	211	36	12	20	30	1.90
41816222--41816262	19	2.2	19	100	0	82	26	31	9	31	1.89
41816291--41816348	3	19.3	3	100	0	116	67	0	32	0	0.91
41822177--41822245	27	2.6	27	80	0	84	27	23	14	34	1.94
41823407--41823462	11	4.8	12	84	6	80	32	0	16	51	1.44
41823407--41823462	23	2.4	23	100	0	112	32	0	16	51	1.44
41824729--41824784	22	2.7	21	74	17	53	37	3	3	55	1.35
41824967--41825092	61	2.1	58	84	10	157	42	4	3	50	1.39
41828001--41828071	37	1.9	37	94	0	124	38	32	15	14	1.87
41837290--41837329	13	3.0	14	82	17	50	40	7	0	52	1.30
41838201--41838225	12	2.1	12	100	0	50	48	8	20	24	1.76
41842758--41842791	16	2.1	17	88	5	52	67	2	0	29	1.05
41842980--41843016	18	2.2	18	85	9	51	45	10	2	40	1.53
41843139--41843182	17	2.5	18	81	7	54	29	2	0	68	1.02
41843133--41843181	17	2.8	17	78	3	53	26	4	0	69	1.06
41843138--41843191	18	3.1	16	77	15	54	29	1	1	66	1.12
41846840--41846895	29	2.0	28	85	3	76	48	3	3	44	1.37
41850555--41850587	14	2.3	15	94	5	59	24	0	6	69	1.10
41863648--41863883	45	5.3	45	84	3	307	24	22	11	41	1.87
41863647--41863871	89	2.5	90	90	3	355	24	23	12	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41864762--41864812	4	12.8	4	87	0	57	39	0	0	60	0.97
41864766--41864812	8	5.9	8	92	0	76	38	0	0	61	0.96
41867454--41867487	17	2.1	15	89	10	50	29	0	64	5	1.17
41870812--41870858	24	2.0	24	86	0	67	53	23	10	12	1.70
41873424--41873573	37	3.9	37	84	10	187	25	22	16	36	1.94
41873533--41873840	51	6.2	51	88	7	438	28	22	13	34	1.93
41873637--41873854	46	4.7	46	86	7	287	29	22	13	34	1.92
41873533--41873840	97	3.1	99	86	8	414	28	22	13	34	1.93
41873727--41873840	52	2.2	52	85	4	149	29	22	11	35	1.89
41876273--41876380	37	3.0	37	89	4	168	36	15	23	25	1.94
41877631--41877824	99	2.0	99	91	2	318	23	14	29	31	1.95
41877631--41877824	49	3.9	49	93	2	316	23	14	29	31	1.95
41880943--41881304	46	7.6	46	82	11	367	35	14	21	29	1.93
41881052--41881304	53	5.1	51	82	14	300	35	14	21	28	1.93
41881211--41881374	37	4.3	38	82	13	178	35	15	21	26	1.94
41882802--41882854	11	4.9	11	81	11	56	41	0	35	22	1.54
41883366--41883457	15	5.8	16	71	15	57	47	4	0	47	1.21
41883866--41883911	23	2.0	23	86	0	65	13	10	23	52	1.71
41885582--41885733	37	3.9	37	81	13	173	26	21	15	36	1.94
41885650--41886015	46	7.6	46	86	8	437	28	22	14	34	1.93
41885693--41886009	52	6.3	52	86	7	417	28	22	13	35	1.93
41885650--41886001	196	1.8	195	92	0	596	28	22	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41885889--41886001	51	2.2	52	84	6	140	30	22	11	36	1.89
41890625--41890700	37	2.1	37	92	0	125	19	14	23	42	1.88
41892468--41892571	41	2.6	41	87	1	138	34	25	16	24	1.95
41893427--41893475	21	2.2	22	89	7	73	0	34	0	65	0.93
41897558--41897603	22	2.1	22	84	8	58	54	17	0	28	1.43
41900525--41900576	25	2.0	26	82	10	63	42	1	5	50	1.37
41902202--41902278	36	2.2	35	86	6	104	37	2	6	53	1.41
41902266--41902318	20	2.9	18	78	18	56	39	1	3	54	1.29
41909358--41909402	20	2.2	20	84	7	56	33	17	2	46	1.61
41912195--41912242	14	3.1	15	79	14	53	60	6	2	31	1.33
41912183--41912233	18	2.7	18	77	17	59	58	5	3	31	1.40
41915627--41915660	17	2.0	17	100	0	68	58	5	17	17	1.57
41918161--41918199	19	2.1	19	95	0	69	23	0	5	71	1.05
41925898--41925982	9	9.4	9	86	0	116	44	21	8	25	1.79
41934094--41934136	22	2.0	22	81	9	52	44	2	0	53	1.13
41938936--41938979	20	2.2	20	87	0	61	0	52	0	47	1.00
41938937--41938982	24	1.9	24	90	0	74	0	52	0	47	1.00
41962293--41962383	42	2.2	42	85	0	119	47	14	23	15	1.82
41964196--41964266	25	3.0	24	81	8	65	38	19	22	19	1.94
41964581--41964619	19	2.1	19	100	0	78	41	5	5	48	1.47
41973033--41973095	21	3.0	21	83	4	74	17	22	15	44	1.86
41974688--41974734	22	2.1	23	92	4	78	44	19	0	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41984862--41984890	11	2.6	11	100	0	58	24	17	27	31	1.97
41985130--41985189	30	2.0	30	83	3	75	21	33	0	45	1.52
41988997--41989058	31	2.0	31	84	6	81	41	3	1	53	1.27
41988997--41989071	31	2.5	32	80	8	77	41	2	1	54	1.23
41989208--41989248	18	2.3	18	83	12	57	58	0	0	41	0.98
41989236--41989286	26	1.9	27	92	4	86	39	1	3	54	1.30
41989407--41989448	21	2.0	21	81	9	50	59	0	2	38	1.10
41989485--41989538	18	3.0	17	84	12	72	51	0	1	46	1.11
41992262--41992320	22	2.7	22	77	12	68	55	0	6	37	1.26
41992249--41992298	18	2.7	19	84	6	68	54	0	6	40	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216