genome.fa.s15.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  104  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32704247--32704296	13	3.9	13	89	2	75	70	6	2	22	1.20
32704244--32704299	13	4.4	13	79	4	69	69	5	1	23	1.18
32704338--32704375	15	2.5	15	100	0	76	68	5	10	15	1.36
32705303--32705347	18	2.5	17	82	13	54	73	2	15	8	1.18
32705301--32705352	18	2.8	18	75	16	52	67	1	19	11	1.31
32708786--32708827	21	2.0	21	85	0	57	38	0	23	38	1.55
32709260--32709333	26	2.8	28	80	11	86	18	27	20	33	1.96
32712392--32712502	58	1.9	58	94	0	195	46	20	13	18	1.83
32720029--32720176	72	2.0	73	88	3	219	27	13	27	32	1.94
32720029--32720211	72	2.5	72	84	4	217	25	13	28	32	1.94
32722485--32722556	33	2.2	33	85	5	92	55	6	26	11	1.60
32727750--32727939	72	2.6	72	89	2	292	24	16	28	30	1.96
32734026--32734063	19	2.0	20	94	5	69	36	10	34	18	1.85
32739225--32739721	131	3.9	122	77	9	297	33	14	13	38	1.86
32739345--32739778	131	3.3	131	84	2	521	33	14	13	38	1.86
32741141--32741184	20	2.2	20	88	8	63	29	6	20	43	1.78
32756915--32756965	17	3.1	17	80	13	61	15	27	0	56	1.39
32759899--32759923	12	2.1	12	100	0	50	44	8	16	32	1.76
32761908--32761989	42	2.0	42	85	4	112	14	35	28	21	1.93
32766744--32766774	11	2.7	12	90	10	55	25	0	9	64	1.24
32768375--32768410	18	1.9	19	88	5	56	30	11	22	36	1.89
32769332--32769519	50	3.6	50	80	4	187	27	20	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32776199--32776330	50	2.6	51	82	3	167	36	12	16	34	1.86
32779441--32779470	15	2.0	15	100	0	60	6	46	0	46	1.29
32779627--32779685	21	2.9	19	72	22	57	11	22	1	64	1.35
32784329--32784377	22	2.2	23	82	10	66	42	18	8	30	1.79
32789814--32789864	23	2.2	23	86	10	77	7	9	3	78	1.07
32792245--32792293	22	2.2	23	82	10	66	42	18	8	30	1.79
32794024--32794329	60	5.1	61	68	13	158	22	24	14	39	1.91
32794055--32794276	30	7.4	30	74	5	123	22	24	13	39	1.90
32794120--32794296	90	2.0	87	81	8	205	22	25	14	37	1.92
32794143--32794329	29	6.3	29	75	9	112	22	26	13	37	1.92
32796074--32796118	21	2.2	20	84	15	56	24	4	13	57	1.54
32797224--32797547	165	2.0	165	94	0	567	30	22	9	37	1.86
32797666--32797709	19	2.4	18	80	3	52	25	4	6	63	1.38
32802311--32802352	23	1.9	23	85	9	61	23	9	11	54	1.66
32809859--32810037	96	1.9	96	87	0	268	35	17	15	31	1.91
32811088--32811136	25	2.0	25	84	15	66	48	12	12	26	1.75
32814273--32814484	40	5.3	40	80	2	221	21	28	16	33	1.95
32814289--32814347	20	3.0	20	68	9	57	16	28	15	38	1.89
32814272--32814475	80	2.6	79	84	2	255	20	27	16	35	1.94
32831616--32831657	22	2.1	19	86	13	57	45	2	0	52	1.13
32843594--32843659	26	2.5	26	92	0	105	24	25	27	22	2.00
32847129--32847166	19	2.0	19	90	10	60	28	7	21	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32866923--32866964	22	1.9	22	90	0	66	19	9	9	61	1.53
32870408--32870467	29	2.1	29	81	6	68	36	16	13	33	1.88
32872097--32872131	17	2.1	16	89	5	52	60	0	0	40	0.97
32872097--32872147	8	6.6	8	74	17	54	58	0	0	41	0.98
32876312--32876357	22	2.1	22	100	0	92	56	4	13	26	1.55
32881351--32881618	137	2.0	137	87	1	394	18	22	26	32	1.97
32886778--32886805	11	2.5	11	100	0	56	25	25	10	39	1.87
32890147--32890194	24	2.0	24	88	8	71	10	43	0	45	1.38
32891272--32891325	18	3.1	18	81	7	58	12	46	0	40	1.42
32893937--32893988	22	2.4	22	93	3	88	38	25	11	25	1.89
32898324--32898417	46	2.0	46	95	0	170	34	21	20	24	1.97
32900926--32901002	25	3.1	24	85	5	100	35	19	23	22	1.96
32900896--32901002	50	2.2	49	83	5	126	33	19	22	24	1.97
32900939--32901002	24	2.6	25	85	2	85	34	20	21	23	1.97
32904181--32904238	16	3.6	16	75	9	55	20	15	12	51	1.75
32905314--32905371	25	2.3	25	81	0	71	18	31	25	24	1.98
32916736--32916998	40	6.6	40	88	3	325	26	27	20	24	1.99
32924652--32924914	40	6.6	40	88	3	325	26	27	20	24	1.99
32927189--32927213	11	2.3	11	100	0	50	44	24	0	32	1.54
32933001--32933030	14	2.1	14	93	0	51	50	26	0	23	1.50
32936646--32936699	20	2.7	20	73	2	54	35	5	11	48	1.62
32945847--32946023	51	3.5	50	85	5	223	29	25	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32945937--32946019	26	3.2	26	65	27	68	32	25	12	30	1.92
32966744--32966783	13	3.0	13	92	7	71	22	17	0	60	1.37
32969050--32969241	51	3.8	50	80	8	210	31	26	13	29	1.93
32974566--32974741	47	3.7	47	86	1	228	32	9	31	27	1.88
32974860--32974938	37	2.1	37	90	0	122	24	18	31	25	1.98
32982681--32982724	20	2.2	20	83	0	52	40	15	18	25	1.90
32983873--32983902	10	3.0	10	95	0	51	50	0	6	43	1.28
32995727--32995810	22	3.8	23	81	9	86	16	0	46	36	1.48
32997127--32997165	18	2.1	19	85	9	53	69	7	15	7	1.35
33009310--33009520	40	5.3	40	86	2	248	28	27	20	23	1.99
33011779--33011887	50	2.2	50	85	1	148	23	14	19	42	1.88
33012307--33012359	24	2.2	24	89	0	79	11	18	20	49	1.78
33012315--33012369	24	2.2	25	93	3	94	9	18	23	49	1.76
33013995--33014047	23	2.3	23	81	9	56	45	0	5	49	1.26
33014832--33014907	20	4.0	20	76	15	79	34	0	1	64	1.02
33014829--33014907	9	8.3	9	71	19	54	32	0	1	65	1.00
33017300--33017506	108	1.9	107	88	4	310	45	7	14	32	1.73
33021535--33021929	203	1.9	203	94	0	700	33	20	22	23	1.97
33023767--33023800	17	2.0	17	94	0	59	38	0	11	50	1.39
33024491--33024516	11	2.4	11	100	0	52	23	11	15	50	1.76
33025977--33026468	248	2.0	248	93	0	851	34	12	18	35	1.88
33029405--33029472	12	6.0	11	70	23	52	70	2	16	10	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33029446--33029563	46	2.6	45	75	5	112	64	1	22	11	1.35
33036732--33036782	27	1.9	26	84	11	68	21	9	13	54	1.67
33051979--33052016	20	1.9	20	94	0	67	34	18	23	23	1.96
33052999--33053033	15	2.3	15	90	0	52	71	8	2	17	1.23
33073068--33073144	33	2.3	34	86	8	113	40	11	6	41	1.67
33074937--33074975	18	2.2	18	90	9	62	5	20	2	71	1.17
33076018--33076059	18	2.3	18	84	8	50	14	9	7	69	1.37
33103369--33103460	45	2.0	45	100	0	184	26	6	21	45	1.76
33103926--33103991	34	1.9	34	90	0	105	31	24	18	25	1.97
33112100--33112342	121	2.0	121	95	0	441	28	12	16	42	1.84
33112976--33113061	26	3.3	26	80	0	91	37	22	20	19	1.95
33115395--33115517	28	4.4	28	84	2	140	29	21	24	24	1.99
33115855--33116087	27	8.6	27	84	6	276	18	18	20	42	1.89
33115855--33116087	81	2.9	81	87	2	308	18	18	20	42	1.89
33120055--33120405	47	7.5	47	92	0	549	32	8	29	28	1.87
33120524--33120602	37	2.1	37	88	4	115	25	18	30	25	1.98
33127245--33127326	28	3.2	28	68	22	88	30	21	23	24	1.99
33129902--33130047	43	3.4	42	77	3	148	31	23	15	30	1.95
33130957--33131159	32	6.4	32	89	0	282	19	18	21	41	1.91
33139542--33139610	36	1.9	35	82	8	86	42	23	5	28	1.77
33141069--33141178	30	3.7	30	87	0	139	41	14	27	16	1.87
33141032--33141202	60	2.8	59	73	5	173	39	15	25	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33144600--33144642	3	14.7	3	85	4	52	32	6	0	60	1.23
33145931--33145959	14	2.1	14	100	0	58	41	31	6	20	1.79
33150175--33150343	27	6.3	27	82	10	175	21	15	18	44	1.86
33150176--33150324	54	2.8	54	90	2	237	20	16	18	44	1.87
33150174--33150343	81	2.1	81	83	4	227	22	15	18	44	1.87
33158153--33158199	22	2.1	22	88	0	67	46	14	17	21	1.83
33158233--33158286	26	2.1	26	89	0	81	37	29	22	11	1.89
33158277--33158341	27	2.4	27	87	12	91	29	24	27	18	1.98
33158420--33158489	24	2.9	24	76	4	79	45	22	4	27	1.71
33158555--33159293	27	27.5	27	84	1	804	20	17	20	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216