genome.fa.s15.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  195  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60552476--60552529	27	2.0	27	88	0	81	38	1	7	51	1.41
60552611--60552682	34	2.0	37	86	10	105	54	4	13	27	1.58
60566043--60566084	21	2.0	21	85	0	57	66	9	7	16	1.42
60566760--60566799	20	2.0	21	85	14	57	32	2	2	62	1.22
60567052--60567119	36	1.9	35	82	8	84	29	13	8	48	1.72
60570360--60570406	19	2.5	19	76	13	51	70	14	12	2	1.26
60571102--60571191	35	2.6	35	91	5	139	58	14	20	6	1.58
60571177--60571217	19	2.2	18	86	4	55	75	0	19	4	0.98
60578957--60578991	18	1.9	18	88	0	52	45	0	2	51	1.16
60579309--60579364	28	2.0	28	96	0	103	51	0	30	17	1.46
60592720--60592814	42	2.3	42	92	0	154	25	25	11	37	1.89
60594505--60594537	17	1.9	17	93	0	57	27	0	18	54	1.44
60595761--60595944	46	4.0	46	93	0	305	35	9	26	28	1.88
60601258--60601390	21	6.3	21	78	5	117	14	23	16	45	1.84
60606429--60606559	62	2.1	62	95	1	235	35	6	21	37	1.78
60609430--60609631	43	4.7	43	84	6	196	30	26	17	25	1.97
60616075--60616227	43	3.6	43	91	3	220	30	25	18	26	1.98
60618459--60618501	21	2.1	21	87	8	63	16	4	23	55	1.59
60623913--60623951	19	2.1	19	85	4	53	53	0	2	43	1.14
60625844--60625975	67	2.0	67	82	8	164	29	4	25	40	1.76
60650085--60650140	26	2.1	27	83	3	69	21	10	10	57	1.63
60656848--60656900	25	2.1	25	92	0	88	18	33	16	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60656848--60656914	25	2.7	25	85	0	80	19	29	20	29	1.97
60656906--60656951	24	1.9	24	95	0	83	28	19	21	30	1.98
60661784--60661886	27	3.7	27	77	5	98	43	29	14	12	1.82
60664529--60664589	3	20.3	3	83	6	79	62	1	4	31	1.26
60666116--60666496	87	4.4	87	74	11	219	26	21	20	31	1.98
60666167--60666496	44	7.6	45	75	10	239	26	20	21	31	1.98
60679133--60679193	3	20.3	3	77	12	63	63	1	4	29	1.24
60681403--60681520	43	2.8	42	83	6	139	32	32	16	19	1.94
60685946--60686304	147	2.4	147	83	4	429	32	13	14	40	1.84
60686573--60686807	55	4.2	55	86	4	278	36	37	3	23	1.72
60686763--60686791	14	2.0	15	93	6	51	41	37	0	20	1.53
60686773--60686828	21	2.6	22	85	2	78	39	39	0	21	1.54
60687170--60687208	15	2.7	15	84	4	53	43	33	0	23	1.54
60687375--60687892	114	4.6	114	90	1	745	25	27	21	25	2.00
60688963--60688995	16	2.0	17	94	5	59	42	3	12	42	1.57
60689774--60689940	84	2.0	84	89	4	257	33	13	14	38	1.85
60707713--60707911	97	2.0	99	82	5	244	31	9	21	38	1.84
60712475--60712503	13	2.1	14	93	6	51	0	0	27	72	0.85
60719938--60719978	20	2.0	20	100	0	82	46	29	9	14	1.77
60722366--60722409	23	1.9	22	82	17	54	36	25	0	38	1.56
60722455--60722542	45	2.0	45	93	0	149	31	22	19	26	1.98
60722553--60722739	51	3.7	50	76	7	198	32	26	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60722550--60722731	101	1.8	99	86	5	258	33	26	15	23	1.95
60728837--60728885	22	2.3	20	78	18	55	38	12	0	48	1.41
60728843--60728885	22	2.0	22	90	9	70	34	13	0	51	1.42
60734115--60734156	19	2.2	19	87	8	59	47	0	4	47	1.23
60734841--60734885	7	6.6	7	97	2	83	57	13	0	28	1.36
60736206--60736392	50	3.7	49	87	3	257	19	29	24	26	1.98
60741254--60741500	100	2.4	104	85	6	349	20	29	23	25	1.99
60741255--60741498	50	4.7	50	85	3	290	20	29	24	25	1.99
60746456--60746649	51	3.8	50	83	2	244	19	29	23	26	1.98
60746456--60746638	101	1.8	102	85	3	262	19	30	23	26	1.98
60751366--60751463	41	2.4	41	94	0	169	30	14	28	26	1.95
60751509--60751537	13	2.1	14	93	6	51	31	13	17	37	1.89
60755521--60755719	44	4.6	44	85	5	230	20	19	27	33	1.96
60763945--60764166	96	2.3	97	82	6	265	40	2	18	37	1.65
60764199--60764738	126	4.3	127	89	1	822	32	17	22	26	1.96
60766840--60766906	11	6.0	11	77	13	66	47	0	29	22	1.51
60772505--60772557	26	2.0	26	96	0	97	37	18	18	24	1.94
60773944--60773982	6	6.7	6	88	2	53	69	10	5	15	1.34
60774354--60774389	13	2.8	13	91	0	54	72	0	16	11	1.12
60775621--60775861	87	2.8	88	91	1	396	28	21	24	25	1.99
60776001--60776523	139	3.7	141	91	2	838	34	17	21	26	1.96
60776379--60776467	44	2.0	44	88	0	133	30	22	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60776001--60776523	281	1.9	281	93	0	902	34	17	21	26	1.96
60776569--60776777	50	4.2	50	75	6	172	33	23	19	22	1.97
60776566--60776785	100	2.2	100	89	0	323	33	24	18	23	1.97
60779698--60779737	21	2.0	19	85	9	53	60	2	0	37	1.11
60781108--60781146	19	2.1	18	85	4	51	35	2	15	46	1.60
60781376--60781419	23	1.9	23	95	0	79	18	15	27	38	1.91
60787721--60787796	23	3.3	23	92	0	134	22	21	26	30	1.99
60788386--60788427	11	3.8	12	78	15	54	28	30	0	40	1.57
60790915--60791265	123	2.8	125	90	2	544	33	22	15	27	1.95
60791758--60791797	3	13.3	3	94	0	71	70	0	30	0	0.88
60797703--60797755	18	2.9	19	75	10	58	37	15	1	45	1.57
60804307--60804375	25	2.8	25	79	0	84	15	24	21	37	1.93
60804413--60804474	25	2.5	25	78	7	63	22	27	17	32	1.97
60810162--60810255	35	2.7	35	88	0	143	38	27	11	22	1.89
60810150--60810271	35	3.5	35	80	2	120	40	29	11	18	1.86
60811005--60811043	19	2.1	19	100	0	78	58	10	5	25	1.51
60811010--60811053	19	2.3	19	88	4	61	63	9	6	20	1.46
60819206--60819241	18	2.0	18	94	0	63	50	16	13	19	1.79
60820689--60820725	18	2.1	17	90	5	56	29	16	5	48	1.68
60827346--60827372	13	2.1	13	100	0	54	14	40	7	37	1.74
60840792--60840843	24	2.2	24	89	0	77	50	9	3	36	1.54
60842157--60842276	61	2.0	62	89	1	188	42	5	11	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60859884--60859921	17	2.3	17	86	4	51	34	0	0	65	0.93
60861117--60861178	16	3.9	15	72	17	54	53	1	3	41	1.27
60861155--60861179	8	3.1	8	100	0	50	48	0	0	52	1.00
60867701--60867775	41	1.9	41	83	8	102	33	24	18	24	1.97
60867906--60867957	15	3.2	15	73	19	50	50	13	0	36	1.42
60873928--60873965	20	1.9	20	94	0	67	44	13	7	34	1.72
60874700--60874742	22	2.0	22	86	9	61	55	0	4	39	1.20
60876127--60876152	2	13.0	2	100	0	52	50	0	0	50	1.00
60878020--60878075	28	2.0	27	83	10	69	50	3	5	41	1.43
60880166--60880206	21	1.9	22	85	14	59	43	4	2	48	1.37
60880279--60880318	17	2.3	18	86	4	55	27	2	5	65	1.27
60880742--60880779	15	2.5	15	87	8	51	42	2	5	50	1.39
60884248--60884283	18	1.9	19	88	5	56	55	5	5	33	1.46
60893969--60894045	39	2.0	39	100	0	154	37	15	10	36	1.82
60897157--60897202	21	2.2	21	88	0	65	36	19	15	28	1.92
60897157--60897219	21	2.9	22	75	17	60	36	15	17	30	1.91
60897265--60897308	23	2.0	22	82	13	54	31	11	20	36	1.88
60897290--60897411	23	5.0	23	68	16	68	37	13	18	30	1.89
60902311--60902381	34	2.1	34	89	0	106	30	11	15	42	1.82
60902311--60902402	34	2.7	34	79	5	105	34	10	13	41	1.79
60903784--60903865	36	2.4	36	82	12	109	40	0	3	56	1.17
60903875--60903919	17	2.6	17	96	0	81	48	4	22	24	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60904702--60904740	21	1.9	21	89	5	62	33	2	0	64	1.08
60905159--60905212	23	2.3	23	76	17	58	66	3	0	29	1.09
60919262--60919287	11	2.4	11	100	0	52	7	26	7	57	1.54
60926193--60926248	21	2.7	21	94	0	94	30	39	8	21	1.84
60928370--60928411	19	2.2	18	84	16	50	19	4	7	69	1.31
60928472--60928504	16	2.0	17	88	5	50	51	0	3	45	1.16
60944144--60944197	27	1.9	29	92	7	94	64	0	5	29	1.16
60944316--60944340	8	3.1	8	100	0	50	40	12	0	48	1.40
60946244--60946274	16	1.9	16	100	0	62	51	29	6	12	1.65
60950323--60950366	20	2.1	22	84	16	58	68	9	9	13	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216