genome.fa.s15.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  158  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49651411--49651560	37	4.1	37	94	0	255	34	4	14	47	1.62
49651433--49651534	20	5.4	19	68	14	77	34	4	14	46	1.66
49651559--49651598	9	4.4	9	90	0	62	25	7	27	40	1.82
49657068--49657265	98	2.0	98	100	0	396	30	16	12	40	1.85
49658008--49658230	10	22.9	9	66	19	69	34	4	2	58	1.32
49660897--49660952	16	3.6	16	76	16	64	46	1	0	51	1.11
49661034--49661090	15	3.5	15	71	17	51	49	1	1	47	1.22
49666440--49666587	72	2.1	72	100	0	296	27	25	18	29	1.98
49668074--49668112	14	2.8	14	88	0	60	41	30	2	25	1.69
49669067--49669111	18	2.3	20	85	7	58	13	13	0	73	1.10
49669175--49669236	31	2.0	31	84	9	83	19	8	4	67	1.34
49674806--49674886	20	4.1	20	69	22	53	18	24	18	38	1.93
49680541--49680578	8	4.8	8	84	9	51	34	2	0	63	1.09
49680550--49680579	9	3.4	9	95	4	53	30	0	0	70	0.88
49680634--49680697	19	3.2	19	72	14	58	39	4	0	56	1.20
49683665--49683691	14	1.9	14	100	0	54	44	0	3	51	1.19
49684850--49684886	2	18.5	2	100	0	74	51	0	48	0	1.00
49687016--49687056	22	1.9	21	85	14	57	46	0	4	48	1.23
49696943--49697005	25	2.6	24	75	5	63	19	26	19	34	1.95
49697105--49697228	24	4.9	25	66	15	60	15	23	21	39	1.91
49701769--49701845	35	2.1	36	92	4	129	25	9	14	50	1.72
49715297--49715334	14	2.7	14	84	11	51	76	2	13	7	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49719896--49720158	40	6.6	40	87	3	316	24	20	28	26	1.99
49719935--49720193	80	3.3	80	83	3	220	26	20	27	25	1.99
49721549--49721768	84	2.6	83	81	5	255	34	15	19	30	1.93
49721549--49721801	84	3.0	82	79	6	247	34	16	19	29	1.93
49723946--49723995	19	2.5	20	77	6	57	52	0	8	40	1.31
49734647--49734831	40	4.7	40	83	6	216	25	28	22	24	1.99
49734647--49734831	79	2.3	80	80	8	198	25	28	22	24	1.99
49742638--49742820	79	2.3	81	83	7	223	24	27	22	24	2.00
49742617--49742820	40	5.1	40	81	8	229	24	27	22	25	2.00
49747650--49747728	37	2.1	37	88	4	115	25	30	18	25	1.98
49747847--49748615	47	16.3	47	95	0	1322	29	29	8	32	1.87
49762243--49762322	29	2.6	32	75	13	96	36	3	0	60	1.15
49773097--49773142	23	2.0	23	91	0	74	30	17	30	21	1.96
49773774--49773997	113	2.0	113	95	0	403	35	12	13	37	1.83
49777790--49777831	21	2.0	22	90	4	68	33	0	2	64	1.07
49777792--49777837	21	2.2	21	84	7	58	34	2	2	60	1.21
49777810--49777975	57	2.9	57	84	6	201	43	1	3	51	1.27
49779312--49779343	11	2.9	11	95	0	55	34	34	0	31	1.58
49781169--49781211	18	2.4	18	88	0	59	18	30	9	41	1.82
49781448--49781475	14	2.0	14	100	0	56	28	0	7	64	1.20
49781414--49781462	9	5.3	9	81	13	64	28	0	8	63	1.23
49781455--49781703	49	5.1	49	96	0	428	41	3	8	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49784825--49785110	124	2.3	124	87	1	430	29	19	18	32	1.96
49785297--49785335	12	3.2	12	88	3	51	38	38	0	23	1.55
49785402--49785477	40	1.9	40	84	7	102	22	30	27	19	1.98
49786133--49786183	19	2.5	20	82	14	61	52	0	1	45	1.12
49787673--49787711	21	1.9	19	85	10	51	35	10	0	53	1.35
49789028--49789063	12	3.0	12	95	0	63	22	0	0	77	0.76
49789029--49789076	18	2.7	18	90	3	71	20	2	0	77	0.88
49795504--49795544	20	2.0	20	95	0	73	43	46	0	9	1.36
49798862--49798894	12	2.8	12	90	4	50	57	0	3	39	1.14
49799186--49799238	20	2.4	23	79	20	60	62	3	3	30	1.30
49800328--49800369	19	2.3	18	84	12	50	7	0	11	80	0.88
49801446--49801500	20	2.8	20	88	0	83	25	29	16	29	1.97
49801838--49802161	45	7.2	45	96	0	603	37	15	21	26	1.93
49802794--49802916	57	2.2	56	92	4	203	46	14	21	17	1.84
49803051--49803114	22	2.9	22	72	11	67	68	6	7	17	1.35
49814947--49815037	42	2.2	42	89	0	146	23	26	34	16	1.95
49814947--49815055	42	2.6	42	86	2	139	21	27	34	16	1.94
49817954--49817997	20	2.2	20	87	0	61	43	40	0	15	1.47
49839372--49839436	21	3.1	22	81	14	77	38	9	16	35	1.81
49839372--49839427	19	2.8	19	94	5	94	37	10	16	35	1.83
49839471--49839535	16	4.1	16	91	0	103	40	7	32	20	1.80
49843027--49843102	36	2.1	36	80	11	84	38	9	1	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49843195--49843237	23	1.9	22	90	4	68	32	6	4	55	1.47
49848147--49848175	12	2.4	12	100	0	58	41	6	31	20	1.79
49859398--49859511	29	3.9	29	78	15	103	34	21	16	27	1.95
49859410--49859558	28	5.2	28	85	3	165	36	20	14	27	1.92
49862012--49862069	22	2.6	22	72	0	62	36	17	20	25	1.94
49867912--49868099	41	4.5	41	77	10	177	34	24	17	24	1.96
49867861--49868081	41	5.2	41	77	7	176	33	23	19	23	1.97
49867898--49868059	84	1.9	85	91	3	265	35	24	18	22	1.96
49867861--49868099	125	1.9	128	81	6	290	33	24	18	24	1.97
49868917--49868953	17	2.3	17	90	9	60	54	24	0	21	1.45
49870943--49871023	42	1.9	42	85	5	110	30	22	14	32	1.94
49873690--49874008	41	7.6	41	76	7	259	34	26	15	23	1.95
49873730--49873967	84	2.8	84	92	0	413	35	26	15	22	1.94
49876616--49876878	53	4.9	53	84	0	310	26	23	14	36	1.93
49879208--49879263	29	1.9	29	96	0	103	21	23	5	50	1.69
49879215--49879263	15	3.3	15	69	25	50	24	20	6	48	1.72
49884971--49885031	30	2.0	30	100	0	122	32	22	3	40	1.70
49886753--49887029	33	8.3	33	67	7	128	25	24	18	31	1.97
49886752--49887033	101	2.8	101	93	0	483	26	24	17	31	1.97
49888556--49888580	13	1.9	13	100	0	50	24	24	4	48	1.68
49890690--49890864	45	3.9	45	76	8	133	28	18	13	40	1.88
49894003--49894029	4	6.8	4	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49898761--49898818	22	2.6	22	89	8	91	13	27	29	29	1.94
49902529--49902581	6	8.8	6	100	0	106	67	0	0	32	0.91
49902673--49902789	33	3.9	30	71	26	90	69	2	4	23	1.19
49902743--49902785	22	2.0	22	86	9	61	76	2	0	20	0.89
49902678--49902791	5	20.4	5	69	25	52	71	1	3	23	1.11
49903097--49903205	51	2.1	51	86	3	148	13	32	21	33	1.92
49913866--49913895	12	2.5	12	94	0	51	6	30	40	23	1.80
49914955--49915041	30	2.9	29	79	6	86	29	24	13	32	1.94
49922909--49922985	15	5.1	15	71	12	59	44	7	19	28	1.78
49922901--49922985	30	2.8	30	92	0	134	44	7	21	27	1.77
49927571--49927642	15	4.8	15	73	11	58	45	6	19	27	1.76
49927563--49927646	30	2.8	30	92	0	132	45	5	21	27	1.75
49933383--49933465	35	2.4	35	87	0	112	39	19	16	24	1.91
49936161--49936191	16	1.9	16	93	0	53	48	0	0	51	1.00
49947095--49947134	21	1.9	21	85	10	55	70	7	20	2	1.24
49950597--49950642	18	2.6	17	76	10	56	56	0	2	41	1.11
49951659--49951702	21	2.0	23	86	8	65	56	4	2	36	1.32
49957033--49957067	18	1.9	18	88	0	52	28	25	14	31	1.95
49957546--49957585	22	1.9	21	85	10	55	12	10	0	77	0.99
49962003--49962035	11	3.0	11	95	0	57	21	42	9	27	1.83
49962746--49962923	88	2.0	88	92	0	293	20	20	25	33	1.97
49967150--49967234	33	2.5	33	80	3	98	11	9	40	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49970718--49970758	22	2.0	22	85	9	59	39	2	7	51	1.43
49971827--49971925	39	2.5	39	78	0	108	27	8	22	42	1.81
49979166--49979291	28	4.5	28	96	1	218	33	28	11	26	1.92
49979768--49979793	12	2.2	12	100	0	52	42	0	7	50	1.31
49981396--49981523	36	3.5	36	77	9	116	39	32	13	15	1.86
49985019--49985095	28	2.8	28	91	0	127	25	25	24	23	2.00
49985466--49985769	27	11.3	27	82	2	317	17	17	20	45	1.86
49986513--49986549	18	2.1	18	89	0	56	78	2	13	5	1.03
49988644--49989034	195	2.0	195	98	0	764	39	16	12	31	1.85
49990106--49990165	27	2.3	25	76	18	59	33	6	0	60	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216