genome.fa.s15.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  159  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49990478--49990503	13	2.0	13	100	0	52	61	0	0	38	0.96
49995515--49995539	5	5.0	5	100	0	50	60	0	0	40	0.97
49997483--49997628	33	4.4	33	70	6	114	33	18	21	26	1.96
49997412--49997749	101	3.5	99	81	7	370	34	16	22	26	1.96
49997567--49997753	90	2.1	90	89	2	286	33	17	24	25	1.96
50000674--50000716	12	3.5	12	87	3	59	16	23	0	60	1.35
50003919--50003971	19	2.7	20	82	5	63	24	7	0	67	1.16
50017597--50017748	41	3.7	41	89	0	223	33	18	25	23	1.97
50017597--50017785	41	4.6	41	81	9	206	31	17	24	26	1.97
50017597--50017785	82	2.3	82	84	4	229	31	17	24	26	1.97
50017590--50017874	41	6.9	40	73	11	166	29	17	24	29	1.97
50022387--50022413	14	1.9	14	100	0	54	37	22	25	14	1.93
50026969--50027077	46	2.3	46	79	17	136	26	6	20	46	1.74
50030148--50030180	16	2.1	16	94	0	57	45	6	21	27	1.75
50030214--50030266	25	2.1	25	82	6	63	37	1	1	58	1.20
50036369--50036445	37	2.1	36	88	4	111	25	29	18	25	1.98
50036564--50037106	47	11.4	47	92	3	845	29	29	8	32	1.87
50036818--50037106	149	1.9	150	97	0	553	30	29	8	32	1.87
50043457--50043481	5	5.0	5	100	0	50	80	0	0	20	0.72
50048597--50048659	31	2.0	31	100	0	126	38	19	9	33	1.84
50060440--50060472	14	2.3	15	94	5	59	0	15	0	84	0.61
50064354--50064414	30	2.0	30	96	0	113	42	4	22	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50070136--50070502	184	2.0	184	97	0	698	32	9	22	35	1.86
50070462--50070596	54	2.5	54	82	9	168	35	2	25	37	1.68
50070447--50070596	27	5.6	26	81	9	142	37	2	24	36	1.67
50074382--50074454	27	2.7	27	71	0	65	17	27	20	34	1.95
50074625--50074776	45	3.4	45	83	3	173	24	20	16	38	1.92
50076348--50076457	42	2.6	42	76	12	118	25	19	26	29	1.98
50076309--50076465	43	3.7	42	71	13	115	24	18	28	29	1.98
50080846--50080928	44	1.9	44	87	7	125	25	22	24	27	2.00
50084550--50084631	3	27.3	3	82	4	94	4	29	1	64	1.22
50085641--50085676	3	12.0	3	93	0	63	66	0	30	2	1.06
50091337--50091372	15	2.5	14	86	8	54	44	8	0	47	1.33
50093360--50093394	18	1.9	18	88	0	52	31	14	11	42	1.81
50093485--50093706	55	3.9	55	75	11	212	51	12	9	26	1.69
50110244--50110283	19	2.1	19	95	0	71	42	12	5	40	1.64
50111787--50111827	20	2.0	20	90	0	64	21	17	7	53	1.67
50116580--50116612	17	1.9	17	88	11	50	30	21	0	48	1.50
50116802--50116902	51	2.0	51	96	0	184	36	21	0	40	1.60
50117954--50118046	39	2.4	39	92	0	150	44	20	5	30	1.74
50120265--50120339	33	2.2	34	81	9	91	5	24	0	70	1.07
50123359--50123412	21	2.8	19	81	10	65	72	1	22	3	1.10
50123359--50123419	21	3.1	20	72	9	54	72	1	19	6	1.16
50125668--50125781	32	3.6	30	77	12	97	33	4	16	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50125865--50125918	22	2.4	22	87	9	74	29	7	16	46	1.74
50127011--50127119	51	2.1	51	82	0	137	30	10	15	44	1.79
50127032--50127110	17	4.6	17	70	6	61	27	11	16	44	1.82
50128575--50128778	101	2.0	101	92	1	338	32	13	14	39	1.85
50129045--50129344	90	3.3	89	78	9	286	19	20	18	41	1.91
50129209--50129413	90	2.3	90	80	8	222	16	18	20	44	1.87
50129363--50129448	30	2.9	30	87	0	118	16	17	25	40	1.90
50129520--50129590	29	2.4	30	77	17	76	18	16	18	46	1.84
50129535--50129597	29	2.1	30	85	8	85	17	20	20	41	1.91
50129856--50129999	78	1.8	78	80	5	175	22	11	20	45	1.83
50129896--50130063	79	2.1	77	81	5	185	23	14	17	44	1.85
50132088--50132118	16	2.0	15	93	6	53	35	0	0	64	0.94
50132979--50133043	32	2.0	32	96	0	121	36	9	32	21	1.85
50133355--50133397	17	2.4	17	84	11	50	67	0	2	30	1.03
50133801--50133835	16	2.3	15	95	5	61	42	5	25	25	1.77
50141679--50141721	10	4.4	9	82	8	50	74	2	0	23	0.93
50141540--50142988	724	2.0	728	94	1	2579	40	13	15	30	1.85
50143054--50143093	16	2.5	16	83	0	53	45	15	2	37	1.59
50151732--50151804	30	2.5	29	91	4	112	26	23	28	21	1.99
50151921--50151976	26	2.2	25	90	3	85	39	17	23	19	1.92
50152184--50152263	27	3.0	27	88	3	81	17	20	23	38	1.93
50152195--50152411	27	8.2	27	84	8	234	17	17	21	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50152308--50152355	23	2.1	23	96	0	87	14	16	27	41	1.87
50158684--50159149	47	9.7	47	93	1	734	32	8	29	29	1.86
50158683--50159149	192	2.5	192	93	1	789	32	8	29	29	1.86
50161369--50161689	40	8.1	40	87	1	439	24	21	28	25	1.99
50165070--50165562	47	10.6	47	92	5	786	32	7	29	29	1.86
50167853--50168020	59	2.9	58	78	12	175	41	1	4	52	1.31
50168181--50168231	16	3.2	16	88	0	66	25	25	5	43	1.77
50169735--50169768	14	2.5	14	90	4	52	41	2	0	55	1.15
50172716--50172811	37	2.6	37	81	1	111	30	38	9	21	1.85
50174580--50174619	14	2.9	14	82	17	57	30	0	0	70	0.88
50182958--50183247	145	2.0	143	95	1	526	34	8	13	43	1.76
50186656--50186731	37	2.1	37	100	0	152	55	13	7	23	1.64
50204408--50204469	25	2.4	27	78	8	74	69	9	9	11	1.37
50204876--50204919	11	4.2	10	82	8	52	27	2	9	61	1.38
50229769--50229797	5	5.8	5	100	0	58	17	0	0	82	0.66
50239572--50239629	27	2.2	26	84	3	71	43	1	1	53	1.21
50239586--50239622	19	2.0	19	89	5	58	40	0	2	56	1.13
50239611--50239637	7	3.9	7	100	0	54	40	0	0	59	0.98
50246727--50246797	25	2.7	27	80	8	76	33	21	23	21	1.97
50246942--50247010	26	2.7	26	86	4	97	37	23	20	18	1.94
50249371--50249478	30	3.7	30	85	2	121	33	22	21	23	1.97
50249365--50249476	60	1.9	58	83	3	143	32	23	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50249585--50249712	26	4.9	26	81	3	114	41	20	20	17	1.91
50249586--50249688	52	2.0	52	84	0	134	38	22	21	17	1.93
50249887--50250084	27	7.3	27	79	2	175	20	17	18	43	1.88
50249927--50250085	81	2.0	81	82	5	196	22	15	18	44	1.87
50252573--50252624	12	4.3	12	82	0	59	65	1	21	11	1.34
50252609--50252651	20	2.1	20	86	4	59	60	2	27	9	1.40
50253822--50253858	14	2.6	14	86	0	56	37	0	45	16	1.47
50258292--50258330	5	7.6	5	82	5	51	41	17	0	41	1.50
50258602--50258640	19	2.1	19	100	0	78	38	20	5	35	1.75
50259097--50259129	13	2.4	14	90	5	50	39	12	6	42	1.67
50260618--50260649	15	2.1	15	100	0	64	62	6	6	25	1.42
50262854--50262915	31	2.0	31	90	0	97	40	11	24	24	1.87
50263031--50263060	7	4.4	7	95	4	53	43	0	0	56	0.99
50264460--50264497	19	2.0	19	85	10	51	81	0	7	10	0.87
50269239--50269292	27	2.0	27	85	0	72	31	22	5	40	1.77
50281633--50281661	11	2.6	11	100	0	58	51	0	0	48	1.00
50281622--50281750	42	3.1	42	88	5	181	61	0	2	36	1.09
50281683--50281716	17	2.0	17	94	0	59	61	0	0	38	0.96
50281622--50281751	41	3.1	42	86	3	183	60	0	2	36	1.09
50284516--50284567	21	2.4	22	83	3	61	53	1	38	5	1.36
50292426--50292533	44	2.4	43	78	6	117	28	19	19	32	1.96
50292552--50292655	51	2.0	51	81	0	118	30	23	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50292462--50292815	194	1.8	194	87	2	532	27	22	18	31	1.97
50292746--50293347	51	11.9	51	88	1	841	28	24	17	29	1.97
50297210--50297256	19	2.5	20	86	6	62	44	8	19	27	1.79
50299105--50299138	17	1.9	18	88	5	52	58	20	2	17	1.51
50300194--50300220	10	2.7	10	100	0	54	92	0	7	0	0.38
50301221--50301285	29	2.2	29	86	0	94	10	35	27	26	1.90
50306732--50306772	21	1.9	22	85	5	57	43	29	0	26	1.55
50309267--50309309	22	2.1	20	83	12	52	53	9	11	25	1.67
50310248--50310486	41	5.9	41	78	3	187	15	23	28	33	1.94
50310248--50310467	81	2.7	81	79	8	223	14	22	27	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216