genome.fa.s15.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  175  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54779129--54779181	26	2.0	26	100	0	106	43	22	11	22	1.85
54782747--54782793	26	2.0	23	84	16	60	25	12	8	53	1.67
54785712--54785776	32	2.1	32	97	2	123	30	9	12	47	1.72
54786270--54786392	10	12.4	10	66	17	60	70	12	13	3	1.28
54786277--54786380	20	5.3	20	81	11	92	71	11	14	2	1.26
54786277--54786372	21	4.8	20	81	13	92	70	11	14	3	1.27
54789537--54789601	32	2.1	32	97	2	123	30	9	12	47	1.72
54790910--54791002	42	2.2	42	80	0	105	44	19	19	17	1.87
54799849--54799883	15	2.4	15	90	4	54	48	0	8	42	1.33
54806509--54806568	22	2.8	21	79	5	57	25	46	10	18	1.79
54807670--54807728	6	10.2	6	78	14	52	79	1	3	15	0.94
54807670--54807733	23	2.8	22	81	6	74	78	1	4	15	1.00
54807674--54807715	16	2.5	17	92	3	68	78	2	0	19	0.86
54807674--54807722	16	2.9	16	78	6	53	79	2	2	16	0.92
54808285--54808319	15	2.4	15	90	4	54	48	0	8	42	1.33
54813241--54813290	5	10.0	5	100	0	100	40	0	20	40	1.52
54813324--54813391	35	1.9	36	87	3	102	29	13	20	36	1.91
54817132--54817521	51	7.7	51	81	6	425	29	26	15	28	1.96
54817129--54817521	102	3.9	102	89	2	474	29	25	15	29	1.96
54817130--54817518	153	2.5	151	82	5	469	29	26	14	29	1.95
54826594--54826639	20	2.3	20	84	0	56	41	17	17	23	1.90
54830725--54830758	12	2.9	11	91	8	50	8	26	44	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54834810--54834930	38	3.2	38	68	13	104	48	5	11	33	1.63
54834578--54834869	137	2.1	138	91	1	480	45	5	9	40	1.58
54834792--54834945	76	2.0	76	92	0	254	46	5	10	37	1.60
54835013--54835227	75	2.9	73	88	5	317	31	14	9	44	1.78
54835551--54835615	33	2.0	33	96	0	121	36	26	12	24	1.91
54838836--54838872	19	2.0	20	89	10	60	35	8	2	54	1.44
54845801--54845858	29	2.0	29	89	0	89	24	10	29	36	1.88
54859498--54859549	24	2.1	24	82	3	59	57	5	3	32	1.40
54859509--54859558	24	2.1	23	85	7	64	54	8	2	36	1.42
54859593--54859677	17	4.7	17	80	13	98	42	12	15	29	1.84
54859601--54859679	39	2.0	39	97	0	149	43	12	13	30	1.82
54861570--54861657	30	2.9	30	98	0	167	38	15	17	28	1.90
54875770--54875820	22	2.4	22	81	15	63	49	0	0	50	1.00
54875779--54875821	22	2.0	22	90	9	70	48	0	0	51	1.00
54877011--54877056	5	9.2	5	100	0	92	41	19	19	19	1.91
54878079--54878112	9	3.8	9	96	0	59	29	11	14	44	1.81
54892234--54892294	30	2.0	30	96	0	113	18	50	6	24	1.70
54893009--54893061	9	5.8	9	76	12	54	28	0	1	69	0.99
54893008--54893062	28	2.0	27	86	6	76	30	0	1	67	1.01
54912427--54912519	6	15.5	6	100	0	186	33	0	17	49	1.47
54913568--54913605	20	1.9	20	84	10	51	55	21	0	23	1.44
54915297--54915351	25	2.2	25	86	0	74	12	25	21	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54915417--54915512	49	1.9	50	85	2	131	21	26	20	31	1.98
54915470--54915517	25	1.9	25	82	0	60	22	27	18	31	1.97
54925479--54925572	27	3.6	27	72	23	76	42	1	1	55	1.14
54925722--54925862	46	3.1	46	84	5	178	23	15	14	46	1.82
54925722--54925917	47	4.1	46	80	10	189	26	16	13	44	1.84
54925819--54925935	55	2.1	56	91	1	191	30	14	11	43	1.80
54928263--54928370	15	7.2	15	67	12	78	44	7	22	25	1.79
54928257--54928380	30	4.1	30	93	1	203	43	6	24	25	1.78
54932954--54933061	15	7.2	15	67	12	78	44	7	22	25	1.79
54932948--54933071	30	4.1	30	93	1	203	43	6	24	25	1.78
54935015--54935039	9	2.8	9	100	0	50	44	8	0	48	1.32
54937103--54937156	20	2.9	19	81	8	58	46	12	12	27	1.79
54938896--54938997	41	2.5	41	84	7	143	30	19	14	35	1.92
54943095--54943134	21	1.9	21	100	0	80	42	10	7	40	1.67
54965094--54965129	18	1.9	19	88	5	56	44	2	19	33	1.65
54967632--54967752	42	2.9	42	81	9	165	28	15	27	28	1.96
54973422--54973491	25	2.8	25	78	8	79	31	24	20	24	1.98
54978706--54978775	25	2.8	25	88	0	95	25	22	24	27	2.00
54984722--54984976	87	2.9	87	85	0	339	23	20	19	37	1.94
54984714--54985020	87	3.5	87	82	2	319	24	19	19	36	1.95
54986692--54986730	18	2.1	19	85	4	53	25	15	2	56	1.52
54987980--54988019	21	1.9	21	94	0	71	35	17	32	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54989950--54990134	101	1.8	102	90	3	302	23	17	28	31	1.97
54989942--54990132	51	3.8	51	83	4	253	24	16	28	30	1.97
54990138--54990230	45	2.1	45	93	0	159	27	19	19	33	1.96
55016576--55016614	3	13.3	3	94	5	71	64	0	35	0	0.94
55017300--55017473	93	1.8	94	88	3	269	44	10	14	29	1.79
55025042--55025087	3	15.3	3	95	0	83	2	0	30	67	1.03
55028930--55028976	21	2.2	21	81	7	51	25	25	23	25	2.00
55029010--55029106	30	3.3	29	82	4	106	28	6	18	46	1.73
55029037--55029106	29	2.4	30	88	7	99	28	4	20	47	1.69
55030372--55030410	21	1.9	21	85	15	55	33	5	2	58	1.33
55032896--55032939	18	2.4	18	81	7	54	79	4	0	15	0.89
55033226--55033285	28	2.1	27	85	11	77	48	1	10	40	1.47
55034821--55034874	28	2.0	28	85	7	76	61	3	1	33	1.25
55035401--55035486	19	4.2	21	86	10	81	38	17	6	37	1.77
55035404--55035448	23	2.0	22	91	4	72	40	17	4	37	1.70
55035427--55035499	19	3.8	19	96	0	128	38	16	8	36	1.79
55035816--55036160	44	7.8	44	67	8	173	30	23	16	29	1.97
55035728--55036162	132	3.3	132	93	1	714	30	23	17	28	1.97
55036330--55036803	132	3.6	133	86	2	546	29	25	16	28	1.97
55036367--55036836	220	2.1	220	88	1	692	29	25	15	28	1.96
55036330--55036836	44	11.5	44	75	5	445	29	25	16	28	1.96
55038039--55038071	6	5.7	6	96	3	59	0	15	0	84	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55042584--55042623	16	2.6	15	84	7	53	67	0	2	30	1.04
55043324--55043400	19	3.7	21	80	13	77	41	16	5	36	1.71
55043324--55043381	22	2.6	22	84	7	73	43	17	3	36	1.66
55043337--55043413	19	3.8	19	89	6	91	38	16	7	36	1.78
55044494--55044526	6	5.7	6	92	7	59	84	0	0	15	0.61
55045309--55045437	49	2.6	49	92	3	170	27	23	19	30	1.98
55046339--55046420	42	1.9	43	85	2	112	28	28	13	30	1.94
55057161--55057202	17	2.5	17	80	7	50	78	4	0	16	0.91
55057423--55057491	32	2.2	32	97	0	129	52	0	10	37	1.36
55057436--55057505	32	2.2	32	82	5	79	52	0	8	38	1.32
55067931--55067991	28	2.2	28	82	8	72	19	6	1	72	1.16
55075001--55075037	16	2.3	16	90	0	56	45	2	13	37	1.58
55081016--55081102	22	4.1	21	81	8	88	2	14	10	72	1.21
55081087--55081130	19	2.3	19	84	7	54	2	6	11	79	1.01
55081075--55081130	10	5.9	9	79	6	58	1	10	12	75	1.14
55081016--55081120	21	5.1	20	78	13	79	1	13	11	73	1.18
55088617--55088647	16	1.9	16	93	0	53	9	9	9	70	1.33
55089720--55089802	34	2.4	34	87	2	121	46	2	13	37	1.56
55090240--55090345	12	9.2	12	68	20	50	40	1	3	53	1.30
55090240--55090331	37	2.4	36	81	15	98	40	2	4	53	1.33
55090240--55090315	11	6.8	11	72	21	52	40	1	2	55	1.22
55090257--55090454	68	3.0	65	71	17	192	39	3	4	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55099390--55099553	30	5.3	30	83	4	159	35	6	14	43	1.70
55100745--55100807	31	2.0	31	100	0	126	30	6	22	41	1.78
55105116--55105175	16	3.8	16	95	4	104	36	0	31	31	1.58
55105154--55105263	45	2.6	41	76	9	107	36	5	25	32	1.79
55105389--55105430	15	2.7	16	82	14	52	52	2	0	45	1.13
55105398--55105439	15	2.9	15	82	10	52	52	0	0	47	1.00
55105387--55105597	107	2.0	108	97	0	397	49	5	1	43	1.35
55105492--55105537	16	2.9	16	78	12	51	52	2	0	45	1.13
55105492--55105546	15	3.7	15	79	13	53	52	1	0	45	1.11
55105426--55105595	37	4.7	35	67	20	100	48	6	1	43	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216