genome.fa.s15.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  185  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57753476--57753506	16	1.9	16	93	0	53	61	0	0	38	0.96
57756519--57756581	31	2.0	31	100	0	126	31	6	15	46	1.71
57765387--57765416	13	2.3	13	94	0	51	23	3	6	66	1.30
57765999--57766034	18	2.0	18	94	0	63	36	5	25	33	1.79
57770799--57770879	21	3.9	21	71	0	63	43	17	23	16	1.88
57770799--57770942	42	3.4	42	78	5	139	43	16	21	18	1.88
57778604--57778662	27	2.2	26	84	3	73	33	11	0	54	1.37
57779202--57779262	19	3.3	19	76	4	70	42	9	0	47	1.36
57779210--57779262	18	2.9	18	75	11	54	41	9	0	49	1.35
57779802--57779835	5	7.0	5	96	3	61	0	0	17	82	0.67
57779838--57779907	27	2.6	27	79	0	77	45	1	11	41	1.49
57782678--57782717	21	2.0	21	90	5	64	67	7	5	20	1.34
57784249--57784535	94	3.0	94	80	1	342	25	20	19	34	1.96
57784388--57784675	139	2.1	138	83	3	355	28	20	19	32	1.97
57784310--57785063	44	16.3	44	63	17	138	27	19	19	32	1.96
57784527--57784762	94	2.5	93	82	5	269	29	18	19	33	1.95
57784425--57784709	138	2.1	139	81	2	331	28	18	19	33	1.96
57784644--57785071	181	2.3	182	81	4	457	28	18	20	32	1.96
57793273--57793316	22	2.0	21	86	4	61	77	6	15	0	0.97
57794084--57794120	16	2.3	16	86	13	58	40	0	0	59	0.97
57795909--57795963	15	3.7	15	85	0	74	18	0	70	10	1.15
57795908--57795963	18	3.1	18	81	0	58	19	0	69	10	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57808934--57808968	13	2.8	12	83	8	52	25	8	11	54	1.64
57810144--57810220	38	2.0	38	100	0	154	25	20	18	35	1.95
57813424--57813583	83	2.0	81	85	3	214	40	8	5	45	1.57
57816961--57816992	17	1.9	17	93	6	57	53	0	3	43	1.16
57817935--57817974	21	1.9	21	84	0	53	35	2	7	55	1.42
57823504--57823544	22	1.9	21	85	14	57	7	4	26	60	1.43
57827433--57827474	22	1.9	22	85	0	57	23	19	11	45	1.83
57829694--57829746	21	2.5	22	84	6	65	41	20	35	1	1.64
57831947--57832240	126	2.3	125	89	4	439	28	19	17	34	1.94
57832283--57832458	98	1.8	95	89	7	257	39	16	2	41	1.61
57837721--57837774	28	1.9	28	88	0	81	48	1	5	44	1.37
57851854--57851885	16	1.9	17	93	6	57	28	3	0	68	1.04
57855759--57855833	36	2.1	35	87	4	107	36	28	9	26	1.87
57859241--57859280	17	2.3	16	84	16	53	62	0	0	37	0.95
57859241--57859280	18	2.3	17	87	12	55	62	0	0	37	0.95
57859787--57859828	23	1.9	22	85	9	59	35	0	4	59	1.19
57860959--57861028	27	2.5	28	93	2	115	20	14	10	55	1.67
57866793--57866867	39	1.9	39	97	0	141	42	16	9	32	1.79
57874212--57874312	41	2.5	41	83	3	114	18	28	20	31	1.97
57874252--57874331	41	2.0	41	84	0	106	20	27	23	28	1.99
57879890--57879915	6	4.3	6	100	0	52	30	19	15	34	1.93
57887765--57887894	37	3.5	37	91	0	197	33	29	17	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57897402--57897626	40	5.7	40	86	5	296	24	22	27	25	2.00
57901219--57901284	28	2.5	26	86	11	91	43	1	4	50	1.32
57911359--57911428	24	3.0	23	72	2	59	25	7	15	51	1.69
57911917--57911952	12	3.0	12	100	0	72	41	8	16	33	1.78
57915838--57916037	99	2.0	100	99	0	393	36	5	10	49	1.58
57917546--57917598	26	2.0	26	100	0	106	35	15	15	33	1.88
57918309--57918346	19	2.0	20	94	5	69	47	5	18	28	1.70
57918553--57918610	19	2.7	22	84	10	68	36	8	17	37	1.80
57931854--57931917	29	2.2	29	78	10	78	42	1	1	54	1.19
57946005--57946135	58	2.3	54	83	11	158	51	1	1	45	1.19
57946088--57946120	17	1.9	17	93	0	57	60	0	3	36	1.12
57946095--57946160	27	2.5	27	75	7	64	56	1	0	42	1.08
57960020--57960076	20	2.7	21	83	8	71	45	12	10	31	1.76
57966087--57966158	37	1.9	38	85	2	101	37	2	12	47	1.56
57966091--57966173	37	2.2	37	80	6	94	34	7	10	46	1.66
57970664--57970733	35	2.0	36	82	2	88	31	12	18	37	1.89
57970233--57970832	303	2.0	299	95	1	1076	37	11	12	39	1.79
57976676--57976715	20	2.0	20	90	9	64	40	2	2	55	1.27
57981449--57981511	30	2.1	30	96	0	117	57	15	3	23	1.53
57981541--57981583	22	2.0	22	85	0	59	55	9	13	20	1.66
57983253--57983299	16	2.9	16	81	15	60	44	0	0	55	0.99
57987236--57987266	6	5.2	6	100	0	62	83	0	0	16	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57995385--57995679	145	2.0	145	98	0	563	35	17	18	27	1.94
58005798--58005825	12	2.3	12	100	0	56	39	0	32	28	1.57
58010981--58011119	73	1.9	73	96	0	260	45	8	10	35	1.69
58013175--58013311	41	3.5	41	75	17	121	37	17	19	24	1.93
58013231--58013300	33	2.1	33	97	0	131	32	21	24	21	1.98
58018759--58018783	13	1.9	13	100	0	50	28	32	8	32	1.86
58020965--58020997	12	2.8	12	82	17	50	63	3	0	33	1.10
58033073--58033249	58	3.1	57	70	8	148	32	15	18	33	1.92
58038553--58038614	29	2.1	29	90	0	97	30	29	12	27	1.93
58040970--58041001	13	2.5	13	94	0	55	31	0	12	56	1.37
58041096--58041337	50	4.7	50	86	4	297	26	24	28	19	1.99
58041096--58041345	100	2.4	103	87	6	355	26	24	28	20	1.99
58047830--58047899	27	2.6	27	76	0	77	27	32	30	10	1.89
58048819--58048882	31	2.1	31	85	5	85	40	9	1	48	1.45
58049763--58050265	109	4.7	103	73	12	409	33	18	17	30	1.94
58049722--58050265	216	2.5	217	83	5	645	33	18	17	31	1.94
58050434--58051090	112	5.9	111	75	10	474	41	15	15	28	1.87
58051082--58051187	48	2.2	48	85	5	135	46	16	16	20	1.84
58051129--58052805	105	16.0	103	71	11	641	36	16	16	29	1.91
58051138--58051349	108	1.9	108	82	3	264	40	17	14	27	1.88
58050866--58051395	263	2.0	258	83	3	659	43	15	15	25	1.86
58051299--58051501	108	1.9	107	82	8	252	41	14	14	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58052080--58052805	310	2.3	314	77	9	745	35	17	18	28	1.94
58052440--58052745	98	3.0	98	80	11	307	38	17	18	25	1.92
58052537--58052805	110	2.4	111	86	2	380	36	15	17	29	1.92
58058014--58058061	20	2.4	20	85	0	69	33	14	25	27	1.94
58058569--58058598	13	2.3	13	94	0	51	40	46	0	13	1.43
58058738--58058796	9	6.4	9	76	3	64	23	8	25	42	1.82
58061270--58061364	19	5.2	17	71	17	50	15	6	2	75	1.09
58061353--58061386	14	2.4	14	95	0	59	17	0	2	79	0.86
58061322--58061386	24	2.8	23	81	11	62	15	3	3	78	1.00
58061353--58061395	19	2.3	19	88	8	61	18	0	4	76	0.95
58061357--58061400	14	3.2	13	87	6	52	20	0	4	75	0.98
58061441--58061511	33	2.1	34	87	5	110	38	0	0	61	0.96
58061465--58061525	22	2.9	21	87	7	79	37	0	0	62	0.96
58061473--58061541	22	3.1	21	82	10	75	43	0	0	56	0.99
58061592--58061632	21	2.0	21	85	9	57	34	0	2	63	1.08
58061591--58061654	22	2.8	22	77	20	60	35	0	3	60	1.12
58061916--58061972	19	3.0	20	87	7	82	50	0	7	42	1.29
58061971--58062026	13	4.2	13	76	13	51	62	0	3	33	1.12
58061971--58062026	20	2.8	21	74	20	73	62	0	3	33	1.12
58062470--58062552	41	2.0	42	90	2	132	34	7	4	53	1.50
58062615--58062766	72	2.1	72	88	0	223	51	3	3	41	1.34
58063362--58063404	20	2.1	20	83	12	52	37	4	4	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58065340--58065374	18	1.9	18	94	0	61	2	42	0	54	1.15
58065836--58065905	3	23.3	3	71	11	54	31	2	5	60	1.35
58065848--58065908	23	2.8	22	85	5	70	32	3	8	55	1.45
58065871--58065916	23	2.0	23	83	8	58	30	2	10	56	1.46
58078775--58079497	72	9.7	73	81	12	792	30	17	21	31	1.96
58078775--58079536	148	5.1	147	84	9	931	30	17	20	31	1.96
58079263--58079432	84	2.0	87	86	7	242	27	18	20	33	1.96
58079361--58079514	72	2.1	72	85	5	204	29	20	20	29	1.97
58083115--58083191	30	2.6	30	82	0	91	32	25	15	25	1.96
58083136--58083206	30	2.4	30	90	0	106	29	23	16	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216