Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  155  of  216  ( 25871 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48988256--48988287
11
2.8
12
90
9
57
21
9
9
59
1.57
48988260--48988288
11
2.6
11
100
0
58
24
6
6
62
1.45
48991011--48991069
23
2.5
23
78
10
66
71
0
23
5
1.06
48991039--48991082
18
2.6
17
89
7
63
77
0
20
2
0.88
48995298--48995374
41
1.9
41
84
5
104
37
7
1
53
1.38
48997511--48997557
19
2.5
19
86
6
60
25
21
10
42
1.85
49000290--49000343
8
6.9
8
82
4
74
85
9
1
3
0.80
49000290--49000343
24
2.3
23
93
3
90
85
9
1
3
0.80
49001036--49001214
93
1.9
94
84
4
243
29
15
7
47
1.73
49001688--49001745
24
2.4
24
91
0
89
36
10
22
31
1.88
49001932--49002909
44
22.7
44
67
15
271
32
23
18
25
1.97
49001854--49002919
85
12.4
85
69
11
444
32
22
19
25
1.97
49002197--49002931
44
17.1
44
69
15
288
32
22
19
25
1.97
49001854--49002919
129
8.3
129
89
0
1567
32
22
19
25
1.97
49004792--49004838
23
2.0
24
83
4
60
40
8
2
48
1.45
49008591--49008660
28
2.5
28
95
0
122
24
22
15
37
1.93
49009865--49009917
13
3.8
13
78
11
52
77
0
5
16
0.96
49013095--49013144
21
2.3
22
80
10
59
6
6
8
80
1.04
49018145--49018176
7
4.6
7
100
0
64
31
0
0
68
0.90
49024404--49024463
23
2.5
24
78
13
70
21
16
40
21
1.92
49025980--49026017
14
2.8
14
84
4
51
55
0
0
44
0.99
49029381--49029692
44
6.9
43
72
15
152
27
20
18
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49029339--49029649
142
2.2
142
94
0
543
27
20
19
32
1.97
49029426--49029821
186
2.1
186
90
0
605
27
19
19
33
1.96
49029563--49029693
44
3.0
44
89
0
190
27
21
19
32
1.97
49031754--49031830
31
2.6
29
85
10
93
10
9
11
68
1.39
49031777--49031846
37
1.9
36
88
2
104
10
5
11
72
1.26
49031791--49031844
7
8.4
7
82
12
55
11
3
11
74
1.20
49031778--49031843
12
5.3
12
71
12
53
10
6
12
71
1.31
49039130--49039800
100
6.7
100
87
2
889
24
25
22
28
1.99
49039213--49039788
50
11.5
50
65
5
282
23
25
22
28
2.00
49039145--49039807
50
13.2
50
65
6
271
24
24
22
28
1.99
49041184--49041228
14
3.1
15
84
12
58
13
20
0
66
1.24
49041753--49041829
13
6.2
12
79
10
66
2
7
5
84
0.85
49041754--49041796
12
3.6
12
81
12
52
2
13
0
83
0.74
49041767--49041796
11
2.6
12
94
5
53
0
16
0
83
0.65
49044750--49044801
22
2.4
22
81
15
63
7
21
5
65
1.40
49045272--49045318
22
2.1
22
100
0
94
14
36
17
31
1.90
49045275--49045323
22
2.3
21
93
6
82
12
36
16
34
1.86
49047669--49047725
22
2.5
23
88
2
80
52
3
5
38
1.41
49048042--49048096
3
19.0
3
74
7
51
60
7
0
32
1.24
49052475--49052521
18
2.6
17
87
12
67
74
4
14
6
1.17
49053106--49053136
15
2.0
16
93
6
55
70
16
0
12
1.16
49054926--49054970
21
2.1
22
83
4
56
26
4
4
64
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49058853--49058919
31
2.2
31
83
2
82
41
13
10
34
1.79
49068952--49069138
97
2.0
94
86
7
261
48
3
1
45
1.29
49075540--49075596
29
2.0
28
82
3
69
59
8
0
31
1.28
49075599--49075651
12
4.0
12
73
21
52
67
1
0
30
1.01
49075559--49075648
29
3.1
28
81
12
85
63
3
0
33
1.11
49075548--49075651
19
5.3
19
76
9
59
64
2
0
32
1.08
49075548--49075677
10
13.2
9
74
16
91
61
3
0
33
1.19
49077140--49077178
21
1.9
21
89
5
62
53
0
7
38
1.30
49078804--49078855
3
17.7
3
92
4
88
0
32
1
65
1.04
49097381--49097422
22
1.9
22
95
0
75
16
11
16
54
1.70
49100348--49100378
3
10.3
3
92
0
53
0
29
0
70
0.87
49117639--49117689
20
2.7
19
80
14
61
31
0
5
62
1.19
49117639--49117690
19
2.7
19
80
11
61
30
0
5
63
1.18
49120420--49120468
24
2.0
25
84
8
64
57
6
0
36
1.24
49121259--49121292
16
2.1
17
88
5
52
67
8
17
5
1.37
49121269--49121310
23
1.9
23
90
9
70
64
9
21
4
1.42
49122095--49122638
100
5.4
100
86
2
617
24
19
22
33
1.97
49122125--49122644
200
2.6
200
85
0
718
25
18
23
33
1.97
49122149--49122606
50
9.2
49
71
7
330
25
19
22
32
1.97
49122741--49123554
44
17.6
44
69
16
291
26
20
19
32
1.97
49122684--49123383
142
4.9
141
95
0
1156
26
20
19
33
1.96
49124778--49124830
7
7.9
7
87
8
83
15
15
0
69
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49124778--49124830
13
3.9
14
87
7
83
15
15
0
69
1.19
49124778--49124829
20
2.6
20
93
0
95
15
15
0
69
1.20
49130216--49130264
24
2.0
25
84
8
64
57
6
0
36
1.24
49136442--49136491
18
3.1
16
83
11
57
68
0
2
30
1.01
49136861--49136889
15
1.9
15
100
0
58
41
6
13
37
1.72
49148098--49148243
50
2.9
50
82
4
177
23
27
21
28
1.99
49150721--49151128
203
2.0
203
99
0
807
35
15
20
28
1.93
49159739--49159907
85
2.0
85
98
0
329
52
14
5
28
1.63
49165325--49165393
32
2.2
32
82
7
88
62
4
1
31
1.24
49165472--49165523
23
2.3
22
81
12
61
50
7
9
32
1.64
49168019--49168197
50
3.6
50
86
0
232
22
29
21
26
1.99
49168019--49168252
100
2.3
101
80
5
240
24
28
19
27
1.99
49168060--49168242
50
3.5
50
85
4
177
24
30
19
26
1.98
49185876--49185944
32
2.2
32
82
7
88
62
4
1
31
1.24
49186023--49186074
23
2.3
22
81
12
61
50
7
9
32
1.64
49188571--49188749
50
3.6
50
86
0
232
22
29
21
26
1.99
49188571--49188804
100
2.3
101
80
5
240
24
28
19
27
1.99
49188612--49188794
50
3.5
50
85
4
177
24
30
19
26
1.98
49197235--49197266
14
2.1
16
88
11
50
68
3
18
9
1.30
49199107--49199158
23
2.3
22
75
21
54
9
23
1
65
1.32
49202831--49202974
54
2.7
54
82
5
177
34
18
22
25
1.96
49202831--49202958
27
4.7
27
88
1
177
33
19
21
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49202990--49203033
23
1.9
23
95
0
79
22
4
25
47
1.70
49203024--49203076
24
2.2
24
86
6
72
16
9
26
47
1.77
49203248--49203420
32
5.5
31
80
4
179
20
19
19
39
1.92
49203246--49203403
64
2.5
64
84
0
199
21
20
19
37
1.94
49203410--49203461
22
2.4
22
80
0
59
17
15
19
48
1.82
49205861--49205915
21
2.6
21
82
8
58
25
14
21
38
1.92
49213255--49213326
20
3.7
19
80
16
85
58
9
0
31
1.31
49213255--49213331
19
4.1
19
79
15
72
57
9
0
33
1.30
49213336--49213379
19
2.2
21
84
8
56
63
2
2
31
1.19
49214766--49214814
18
2.5
19
83
9
55
40
0
2
57
1.10
49215285--49215352
29
2.3
29
78
9
77
41
4
1
52
1.30
49215843--49215874
11
2.9
11
100
0
64
46
37
0
15
1.46
49216014--49216080
9
7.4
9
83
12
84
25
10
23
40
1.86
49220052--49220079
14
2.0
14
100
0
56
42
14
28
14
1.84
49222418--49222492
37
2.0
37
94
0
132
28
6
38
26
1.81
49223929--49223983
28
2.0
28
85
7
76
16
30
21
30
1.95
49223990--49224135
33
4.4
33
82
0
166
21
21
13
42
1.88
49228597--49228721
13
9.3
13
81
6
117
44
1
18
36
1.60
49246552--49246576
5
5.0
5
100
0
50
20
0
0
80
0.72
49246836--49247182
50
6.9
49
69
6
178
23
19
22
34
1.97
49246804--49247182
98
3.8
99
84
3
456
23
19
21
35
1.96
49249575--49249688
18
6.5
18
71
17
78
9
6
2
81
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49249580--49249700
37
3.2
36
76
21
99
9
5
3
80
0.98
49249559--49249711
57
2.6
60
77
12
142
10
5
5
79
1.05
49249586--49249654
1
69.0
1
75
0
57
5
5
1
86
0.74
49249574--49249666
25
3.8
24
73
17
66
8
4
3
83
0.87
49249586--49249670
8
11.2
8
73
14
65
8
4
2
84
0.83
49257373--49257500
42
3.1
41
79
11
118
18
22
17
40
1.91
49257443--49257500
21
2.8
21
83
0
80
12
22
20
44
1.84
49259652--49259809
59
2.7
59
84
7
214
24
25
22
27
2.00
49259665--49259829
59
2.8
59
82
5
138
23
23
23
30
1.99
49264665--49264706
16
2.8
15
89
10
52
42
0
0
57
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216