genome.fa.s15.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  124  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39280216--39280244	13	2.3	13	94	5	51	62	0	0	37	0.96
39280262--39280361	51	2.0	51	86	4	139	45	2	27	26	1.65
39280321--39280373	11	4.7	11	79	11	54	41	1	30	26	1.66
39280329--39280373	11	3.9	12	83	16	60	42	0	33	24	1.55
39280975--39281027	25	2.0	28	85	10	76	49	0	7	43	1.31
39281258--39281333	31	2.5	31	91	0	125	27	15	11	44	1.82
39282536--39282615	31	2.6	31	82	3	92	42	16	17	23	1.88
39282704--39282780	38	2.1	37	80	7	84	31	2	6	59	1.36
39282975--39283051	31	2.5	31	81	10	88	45	15	10	28	1.79
39287938--39287982	22	2.0	22	91	0	72	20	46	15	17	1.84
39288985--39289016	15	2.1	15	94	0	55	28	15	21	34	1.94
39291418--39291805	194	2.0	194	96	1	724	25	12	15	45	1.82
39302333--39302402	21	3.3	21	70	7	70	17	15	41	25	1.89
39302316--39302444	42	3.1	42	89	2	179	20	16	37	24	1.93
39302376--39302446	21	3.4	21	66	21	58	15	16	40	26	1.89
39307583--39307714	39	3.4	38	92	3	201	32	8	9	50	1.64
39308640--39308694	29	2.0	27	86	13	76	60	9	14	16	1.59
39315376--39315430	29	2.0	27	82	13	67	60	10	14	14	1.60
39323643--39323869	41	5.5	41	80	0	202	22	27	14	35	1.93
39323643--39323869	82	2.8	82	80	0	256	22	27	14	35	1.93
39323646--39323869	123	1.8	123	80	3	272	22	26	15	35	1.94
39331676--39331705	5	6.0	5	100	0	60	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39332666--39332695	14	2.1	14	93	0	51	40	0	43	16	1.48
39333475--39333521	24	1.9	25	83	12	62	38	19	10	31	1.86
39338081--39338264	51	3.6	51	82	5	160	26	14	27	32	1.95
39345870--39345916	5	9.4	5	100	0	94	80	0	0	19	0.70
39347515--39347550	18	2.0	18	100	0	72	50	0	0	50	1.00
39348919--39348954	18	2.1	17	89	5	54	38	8	16	36	1.79
39356693--39357508	47	17.3	47	95	1	1416	29	29	8	32	1.87
39356743--39356821	25	3.3	25	64	16	67	32	27	5	34	1.79
39364111--39364430	157	2.0	157	96	0	595	29	26	12	31	1.93
39380168--39380202	18	1.9	18	88	0	52	8	25	34	31	1.86
39381804--39381863	30	2.0	31	83	3	77	21	25	13	40	1.89
39383837--39383896	17	3.5	16	84	8	66	71	1	18	8	1.19
39383835--39383895	18	3.4	18	90	2	97	70	1	19	8	1.21
39393653--39393955	47	6.4	47	90	3	416	33	9	30	27	1.88
39393659--39393934	93	2.9	93	88	3	401	31	10	30	26	1.90
39393806--39393927	22	5.3	22	62	21	61	33	11	29	25	1.91
39393664--39393934	140	1.9	142	88	5	415	31	10	31	26	1.90
39399322--39399365	2	22.0	2	100	0	88	0	0	50	50	1.00
39400723--39400797	35	2.1	35	81	13	84	22	4	6	66	1.32
39402403--39402445	6	7.5	6	86	2	54	16	0	4	79	0.90
39402403--39402445	18	2.5	17	88	7	61	16	0	4	79	0.90
39407473--39407540	16	4.2	16	92	0	109	29	0	32	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39407670--39407979	157	2.0	157	94	0	548	43	3	5	47	1.42
39407733--39407982	76	3.1	81	63	24	186	46	4	3	45	1.39
39407716--39408037	157	2.0	155	81	5	349	46	4	4	44	1.44
39408859--39408888	13	2.3	13	100	0	60	60	13	6	20	1.55
39413295--39413393	39	2.4	41	80	14	116	36	4	6	53	1.45
39414280--39414329	21	2.5	20	81	15	59	54	2	4	40	1.31
39414283--39414377	10	9.4	10	69	17	54	56	1	6	35	1.31
39414285--39414398	30	3.7	31	73	10	83	60	0	5	33	1.25
39414349--39414399	10	5.0	10	83	4	66	72	0	3	23	1.01
39414364--39414411	10	4.4	11	89	10	64	75	0	8	16	1.04
39415139--39415184	23	2.0	23	83	8	58	45	6	0	47	1.28
39415305--39415361	27	2.1	28	86	3	80	52	12	7	28	1.64
39420361--39421079	44	16.6	45	70	16	303	29	24	18	27	1.98
39420361--39421103	217	3.4	217	95	0	1317	29	24	18	27	1.98
39421102--39421222	44	2.7	45	81	13	151	26	25	19	28	1.99
39420959--39421246	143	2.0	143	97	0	540	25	26	20	27	1.99
39429315--39429369	24	2.3	25	81	12	62	14	25	12	47	1.80
39433072--39433110	15	2.6	15	84	15	62	58	5	7	28	1.47
39437570--39437618	20	2.5	20	89	0	71	30	6	8	55	1.54
39448101--39448221	23	5.3	23	85	4	165	23	19	24	31	1.98
39448101--39448221	45	2.7	46	90	1	190	23	19	24	31	1.98
39448425--39448472	23	2.0	25	84	8	64	39	0	22	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39450061--39450108	17	2.7	17	77	6	51	12	20	45	20	1.83
39450383--39450496	27	4.3	27	86	4	153	35	17	21	26	1.95
39450570--39450664	24	4.0	24	87	0	127	26	5	24	44	1.75
39450628--39450698	24	3.0	23	82	12	72	26	8	18	46	1.77
39450765--39450829	27	2.4	27	83	14	82	21	24	21	32	1.98
39450783--39450835	27	2.0	27	85	7	72	24	26	18	30	1.98
39450847--39451084	32	7.5	33	81	6	276	18	19	23	38	1.93
39450844--39451084	64	3.8	64	90	1	367	18	19	23	38	1.93
39451321--39451408	28	3.0	29	86	5	108	22	22	25	29	1.99
39451312--39451394	28	3.0	28	90	0	121	19	22	26	31	1.98
39452825--39452853	15	1.9	15	100	0	58	82	3	13	0	0.79
39452825--39452863	20	1.9	21	89	5	62	79	2	17	0	0.84
39454735--39454761	3	9.0	3	100	0	54	66	0	0	33	0.92
39455227--39455402	27	6.5	27	83	3	201	27	14	27	30	1.95
39455228--39455383	82	1.9	81	88	3	233	26	15	28	29	1.96
39455224--39455402	82	2.2	81	82	3	225	27	15	27	30	1.96
39465935--39466139	27	7.6	27	86	3	232	26	15	28	29	1.96
39465935--39466139	109	1.9	109	83	2	268	26	15	28	29	1.96
39476751--39476785	7	5.1	7	93	6	63	71	0	0	28	0.86
39481754--39481891	28	4.9	28	81	3	161	31	24	17	26	1.97
39481721--39481891	56	3.1	56	85	1	202	31	23	18	26	1.97
39482737--39482806	32	2.2	32	82	7	81	44	11	17	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39485208--39485237	13	2.3	13	94	0	51	73	16	0	10	1.09
39485490--39485535	18	2.5	18	82	3	56	17	54	23	4	1.61
39485490--39485530	19	2.2	19	86	4	57	17	53	24	4	1.63
39486452--39486509	30	1.9	30	100	0	116	24	10	10	55	1.65
39486527--39486574	3	16.0	3	95	0	87	33	2	0	64	1.05
39497441--39497493	16	3.3	15	78	17	52	52	1	1	43	1.23
39497441--39497490	18	2.8	17	82	8	55	52	2	2	44	1.24
39497709--39497743	8	4.6	8	96	3	56	31	0	11	57	1.34
39497709--39497743	15	2.3	15	90	9	54	31	0	11	57	1.34
39500366--39500405	22	1.9	21	85	10	55	25	15	17	42	1.88
39500466--39500506	21	2.0	21	85	0	55	34	9	12	43	1.75
39500389--39500683	101	2.9	99	83	6	333	36	17	9	36	1.83
39501378--39501403	6	4.3	6	100	0	52	50	0	0	50	1.00
39501770--39501826	19	3.0	19	80	10	55	50	3	0	45	1.18
39502077--39502143	11	5.9	11	75	17	66	56	1	2	38	1.24
39502071--39502143	24	3.1	24	77	16	73	56	1	4	38	1.27
39502470--39502512	19	2.3	19	81	14	54	39	0	0	60	0.97
39502475--39502534	21	2.7	23	77	17	63	35	1	3	60	1.23
39502488--39502560	31	2.2	32	77	13	78	36	1	4	57	1.26
39507141--39507208	33	2.1	33	100	0	136	32	14	17	35	1.91
39516225--39516594	23	15.8	23	82	3	434	40	19	13	26	1.88
39516225--39516594	47	7.9	46	84	2	434	40	19	13	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39516225--39516594	70	5.3	70	89	1	456	40	19	13	26	1.88
39516234--39516594	117	3.1	117	90	1	537	40	19	13	25	1.89
39521127--39521190	18	3.5	18	67	12	58	32	17	25	25	1.96
39521126--39521200	37	2.0	37	94	0	132	33	17	22	26	1.96
39527491--39527524	3	11.3	3	87	0	50	73	0	26	0	0.83
39527872--39528010	36	3.9	36	84	1	145	19	8	22	49	1.75
39528690--39528743	21	2.4	22	81	12	65	14	11	40	33	1.82
39528709--39528805	21	4.6	21	72	10	72	18	11	35	35	1.87
39529471--39529530	29	2.1	28	84	6	77	55	13	5	26	1.59
39529790--39529824	2	17.5	2	100	0	70	48	51	0	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216