genome.fa.s15.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  113  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35876047--35876097	27	1.9	26	84	11	68	21	9	13	54	1.67
35888187--35888806	44	13.2	44	65	19	218	33	18	20	28	1.96
35888187--35888857	142	4.7	142	94	0	1126	33	18	20	28	1.96
35888729--35888884	44	3.6	42	75	10	113	30	18	20	30	1.96
35888777--35888947	85	2.0	85	84	4	220	29	19	22	28	1.98
35892882--35893048	85	2.0	85	82	4	203	23	25	30	20	1.98
35894851--35894918	22	3.2	21	80	15	77	44	16	5	33	1.72
35901610--35901668	22	2.6	23	79	10	59	40	16	6	35	1.76
35906532--35906720	50	3.8	50	82	0	216	27	21	28	22	1.99
35927852--35927899	24	2.0	24	83	0	60	27	18	27	27	1.98
35929856--35929902	22	2.1	23	84	4	60	48	0	12	38	1.41
35940721--35940758	15	2.5	15	86	0	58	28	15	13	42	1.85
35945531--35945555	13	1.9	13	100	0	50	44	32	0	24	1.54
35945470--35945621	81	1.9	81	92	0	259	32	22	6	38	1.80
35955883--35956021	68	2.0	68	100	0	278	36	24	4	34	1.75
35956354--35956426	34	2.1	35	84	2	94	43	16	6	32	1.74
35957118--35957159	22	1.9	22	85	9	59	42	4	4	47	1.45
35958000--35958036	15	2.5	15	90	0	56	27	18	8	45	1.77
35958296--35958324	7	4.1	7	100	0	58	44	13	0	41	1.44
35958503--35958541	20	2.0	20	94	0	69	35	25	33	5	1.78
35968056--35968117	28	2.2	28	83	11	74	29	12	6	51	1.65
35968702--35968753	9	5.8	9	79	0	59	50	17	5	26	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35968702--35968753	18	2.9	18	79	0	68	50	17	5	26	1.69
35969380--35969416	16	2.3	16	95	0	65	37	5	32	24	1.78
35969396--35969493	44	2.2	46	90	3	155	30	4	28	36	1.76
35969650--35969683	17	2.0	17	100	0	68	58	0	0	41	0.98
35969716--35969755	20	2.0	21	85	5	55	60	5	0	35	1.19
35969723--35969803	28	2.9	28	81	10	94	55	1	0	43	1.07
35969630--35969889	117	2.3	115	87	10	371	50	3	1	44	1.28
35969845--35969908	32	2.0	32	81	0	74	48	3	0	48	1.17
35975416--35975514	49	2.0	49	98	0	189	43	19	3	34	1.66
35975912--35976174	9	28.9	9	67	16	75	62	2	3	31	1.25
35975916--35976031	19	6.3	19	66	13	55	66	2	2	28	1.18
35975992--35976033	21	2.1	19	86	8	57	66	9	0	23	1.21
35976039--35976156	27	4.1	28	77	15	109	58	0	4	36	1.23
35976103--35976174	28	2.4	30	81	9	76	62	2	2	31	1.24
35976410--35976759	174	2.0	171	93	2	603	33	8	19	39	1.81
35976835--35976909	9	8.6	9	76	8	57	25	2	1	70	1.08
35976835--35976909	18	4.3	17	75	11	71	25	2	1	70	1.08
35976801--35976891	34	2.7	35	80	14	93	32	2	1	63	1.13
35976800--35976890	42	2.1	43	84	9	116	31	2	1	64	1.12
35980553--35980786	42	5.6	40	80	8	270	21	17	26	34	1.95
35980554--35980790	84	2.8	84	93	0	384	21	18	26	33	1.96
35989555--35989587	16	2.1	16	88	11	50	54	0	3	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35989554--35989598	22	2.0	22	87	8	65	53	0	4	42	1.21
35989724--35989770	10	4.6	10	80	12	51	63	0	2	34	1.06
35996570--35996595	13	2.0	13	100	0	52	30	38	0	30	1.58
36002506--36002533	8	3.5	8	100	0	56	10	14	0	75	1.06
36006617--36006656	21	1.9	21	89	0	62	47	7	2	42	1.45
36013176--36013774	47	12.6	47	91	2	937	33	7	29	29	1.86
36013176--36013774	96	6.3	94	93	1	937	33	7	29	29	1.86
36013892--36013993	37	2.8	37	95	0	177	24	18	30	26	1.98
36015443--36015476	18	1.9	18	88	5	52	38	5	0	55	1.24
36020143--36020220	36	2.1	37	88	2	113	25	32	17	24	1.97
36020339--36020792	47	9.7	47	96	1	801	29	29	8	32	1.87
36024672--36025052	40	9.8	40	92	3	591	26	28	20	25	1.99
36024672--36025052	119	3.3	119	91	2	596	26	28	20	25	1.99
36026262--36026339	37	2.1	37	87	0	111	26	32	16	24	1.96
36026457--36026817	47	7.7	47	95	2	611	29	29	8	32	1.86
36026457--36026817	143	2.6	143	93	3	610	29	29	8	32	1.86
36033651--36033873	40	5.7	40	83	8	253	24	21	28	25	1.99
36033651--36033871	78	2.8	78	84	6	277	24	22	28	24	2.00
36040211--36040519	40	7.8	40	91	4	484	25	27	21	24	1.99
36040211--36040519	79	3.9	79	91	4	464	25	27	21	24	1.99
36040211--36040519	119	2.6	119	90	4	489	25	27	21	24	1.99
36041728--36041805	37	2.1	37	87	0	111	26	32	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36041924--36042337	47	8.7	47	95	2	706	29	28	8	33	1.87
36041924--36042337	96	4.4	94	95	2	706	29	28	8	33	1.87
36041924--36042316	143	2.8	143	95	2	702	29	28	8	33	1.87
36056822--36056878	17	3.4	17	76	11	64	17	42	0	40	1.49
36065830--36065879	8	6.0	8	81	9	64	20	0	0	80	0.72
36073027--36073107	15	6.0	13	70	25	53	50	3	0	45	1.19
36073036--36073103	27	2.6	26	90	9	111	50	4	0	45	1.22
36076145--36076191	20	2.5	19	75	6	51	55	2	2	40	1.24
36092190--36092863	89	7.6	89	93	1	1098	31	18	22	26	1.97
36092190--36092863	357	1.9	356	91	0	1116	31	18	22	26	1.97
36092973--36093103	37	3.4	37	69	13	118	32	16	21	29	1.95
36093001--36093129	41	3.2	41	69	14	131	32	16	17	33	1.93
36092964--36093153	81	2.3	81	97	0	353	31	17	21	30	1.96
36101320--36101603	50	5.6	50	80	2	273	23	26	20	28	1.99
36114357--36114409	13	4.1	13	85	0	79	35	28	7	28	1.84
36120960--36121121	46	3.6	46	91	4	251	28	24	16	31	1.96
36126412--36126499	42	2.1	42	95	0	158	36	4	7	51	1.52
36130887--36130975	43	2.1	42	80	2	97	30	32	15	21	1.94
36134314--36134338	10	2.5	10	100	0	50	40	8	0	52	1.31
36145106--36145140	18	1.9	18	94	0	61	17	14	5	62	1.49
36146044--36146126	35	2.4	35	81	0	103	14	14	27	43	1.84
36146140--36146200	33	1.9	32	87	12	90	11	4	34	49	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36158383--36158487	51	2.1	51	96	0	192	23	9	18	48	1.77
36160826--36160944	59	2.0	58	85	1	157	25	18	15	40	1.90
36165814--36165866	21	2.5	21	87	0	70	26	3	20	49	1.66
36170622--36170677	14	3.6	16	76	18	55	46	0	1	51	1.11
36170626--36170671	14	3.1	15	87	6	58	47	0	2	50	1.13
36170750--36170787	18	2.1	19	85	5	51	31	2	7	57	1.41
36170873--36170907	17	1.9	19	88	11	56	31	2	2	62	1.24
36171308--36171431	59	2.1	59	90	3	196	20	24	14	40	1.90
36172652--36172698	18	2.6	19	83	10	62	34	10	17	38	1.84
36175438--36175551	34	3.3	33	80	3	120	30	7	14	48	1.70
36179304--36179465	46	3.5	46	81	0	162	29	24	18	27	1.98
36190171--36190205	10	3.5	10	92	0	61	60	5	20	14	1.54
36190779--36191065	27	10.7	27	83	8	320	19	15	24	40	1.90
36190781--36191065	54	5.3	54	85	5	355	19	15	24	40	1.90
36190782--36191065	81	3.5	81	83	7	357	19	15	24	40	1.90
36198814--36198854	19	2.2	19	86	8	57	29	9	9	51	1.67
36208210--36208269	27	2.2	27	84	0	75	33	13	31	21	1.92
36217441--36217488	23	2.1	23	100	0	96	43	0	12	43	1.42
36259748--36259884	39	3.5	40	81	7	113	26	28	21	23	1.99
36259748--36259899	78	1.9	78	80	7	175	27	28	20	23	1.99
36259786--36259911	39	3.2	38	84	7	155	28	28	20	22	1.98
36260955--36260981	14	1.9	14	100	0	54	0	7	3	88	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36269197--36269224	14	2.0	14	100	0	56	14	14	0	71	1.15
36269221--36269291	5	13.2	6	80	14	59	30	2	16	49	1.61
36269213--36269268	27	2.1	27	100	0	112	28	7	10	53	1.62
36269250--36269295	20	2.2	21	88	7	76	30	0	21	47	1.51
36269250--36269295	10	4.5	10	86	13	67	30	0	21	47	1.51
36273103--36273150	21	2.3	21	78	7	53	31	4	20	43	1.71
36273738--36273850	50	2.3	49	80	4	120	28	23	17	30	1.97
36273741--36273850	25	4.4	25	72	10	82	27	22	18	31	1.97
36278085--36278138	26	2.1	26	100	0	108	29	31	3	35	1.75
36285879--36285914	15	2.4	15	90	0	54	55	8	0	36	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216