genome.fa.s15.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  160  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50310996--50311033	15	2.5	15	86	0	58	21	0	42	36	1.53
50310969--50311036	15	4.9	14	74	13	52	23	0	35	41	1.55
50320002--50320060	27	2.2	25	82	11	82	20	0	11	67	1.21
50320012--50320059	13	3.6	13	97	2	87	22	0	12	64	1.27
50320540--50320592	21	2.5	21	84	9	72	39	1	1	56	1.21
50320632--50320725	49	1.9	49	86	4	136	47	14	1	36	1.52
50324000--50324068	21	3.3	21	77	0	66	39	18	37	4	1.71
50324501--50324592	42	2.2	42	84	5	114	27	22	21	28	1.99
50324514--50324762	43	5.9	42	80	8	231	26	21	19	32	1.97
50325161--50325223	30	2.1	30	96	0	117	23	3	15	57	1.53
50327312--50327526	41	5.2	41	89	2	315	30	24	19	25	1.98
50331612--50331745	33	4.2	33	79	12	172	8	18	11	60	1.57
50332816--50332872	21	2.6	22	86	2	80	21	10	26	42	1.85
50337912--50337946	18	2.0	17	88	5	52	45	0	0	54	0.99
50337821--50338203	120	3.2	120	99	0	757	43	2	4	48	1.37
50338032--50338066	18	2.0	17	88	5	52	45	0	0	54	0.99
50338152--50338186	18	2.0	17	88	5	52	45	0	0	54	0.99
50338351--50338441	45	2.0	44	83	6	112	37	27	5	29	1.79
50338422--50338457	16	2.2	16	95	0	63	38	33	2	25	1.70
50341175--50341223	23	2.1	23	96	0	89	38	0	14	46	1.44
50341301--50341344	22	2.0	21	87	12	63	38	13	9	38	1.77
50341688--50341749	24	2.6	23	75	12	63	51	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50341934--50341958	13	1.9	13	100	0	50	32	32	8	28	1.86
50342758--50343324	126	4.5	125	85	4	752	29	16	23	30	1.96
50346494--50346615	21	5.7	22	76	12	85	26	0	25	47	1.58
50346494--50347131	43	15.0	43	80	7	628	24	0	27	47	1.56
50346494--50347162	22	30.0	22	79	7	649	24	0	27	47	1.57
50346494--50347131	65	10.0	64	80	8	610	24	0	27	47	1.56
50348577--50348614	20	1.9	20	84	10	51	55	7	2	34	1.43
50349617--50349654	20	1.9	20	84	10	51	55	7	2	34	1.43
50350610--50350652	22	2.0	22	85	0	59	41	6	32	18	1.77
50350610--50350658	11	4.4	11	78	2	53	40	6	34	18	1.75
50351807--50352056	93	2.7	93	89	1	385	39	17	16	27	1.90
50351833--50352887	70	15.2	69	74	12	708	39	17	16	27	1.91
50352019--50352422	93	4.4	93	93	2	672	38	17	16	26	1.92
50352101--50352138	20	1.9	20	94	0	67	47	13	13	26	1.79
50352202--50352584	163	2.4	163	93	2	646	39	16	16	27	1.91
50352362--50352901	93	5.8	93	94	0	929	39	16	16	27	1.90
50352176--50352894	186	3.9	186	87	6	842	39	16	16	27	1.90
50352202--50352650	163	2.8	163	86	8	612	38	16	16	27	1.91
50353592--50353689	28	3.5	28	85	2	126	29	25	13	31	1.93
50360011--50360829	93	8.8	93	90	4	999	39	16	15	28	1.90
50360035--50360412	163	2.3	163	92	1	627	39	16	16	27	1.90
50360035--50360727	163	4.3	163	80	8	558	38	16	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50361520--50361645	28	4.5	28	87	2	164	30	24	14	30	1.94
50363100--50363330	38	5.8	38	73	18	170	65	0	33	0	1.02
50363092--50363308	43	5.0	43	81	6	217	64	0	34	0	1.04
50363109--50363232	48	2.6	47	71	17	67	65	0	33	0	0.99
50363101--50363323	10	21.8	10	68	16	73	65	0	32	0	1.02
50363659--50364421	158	4.9	152	74	13	704	50	7	11	30	1.67
50363841--50363870	16	1.9	15	93	6	51	70	0	3	26	1.03
50363652--50364414	317	2.4	316	93	0	1323	50	7	11	30	1.66
50374702--50374764	29	2.2	29	82	5	74	53	11	6	28	1.60
50378719--50378748	3	10.0	3	100	0	60	33	0	0	66	0.92
50384796--50384972	46	3.8	46	87	0	246	29	23	9	37	1.85
50390433--50390477	25	2.0	23	83	16	58	24	42	26	6	1.79
50393505--50393536	3	10.7	3	100	0	64	68	0	0	31	0.90
50399112--50399175	32	2.0	32	100	0	128	28	18	25	28	1.98
50400229--50400277	25	2.0	25	83	0	62	38	0	16	44	1.48
50400673--50400758	43	2.0	43	90	0	136	52	1	23	23	1.54
50407804--50407851	13	3.7	13	78	10	62	33	6	25	35	1.81
50407807--50407855	26	1.9	26	91	4	82	32	6	28	32	1.82
50410697--50411088	95	4.1	95	83	2	428	38	14	18	28	1.90
50412913--50412940	14	2.0	14	100	0	56	35	7	0	57	1.26
50419203--50419241	17	2.3	17	81	0	51	71	7	5	15	1.26
50423302--50423331	16	1.9	15	93	6	51	73	0	26	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50424015--50424067	15	3.4	15	78	19	63	45	0	9	45	1.36
50424006--50424097	34	2.6	34	85	13	125	42	0	13	44	1.43
50427780--50427888	41	2.8	40	79	10	127	26	17	22	33	1.96
50432523--50432630	43	2.5	43	83	5	121	29	12	25	32	1.93
50432437--50432632	86	2.3	88	77	9	206	30	13	23	32	1.93
50433156--50433192	16	2.3	16	90	9	58	32	0	13	54	1.40
50435140--50435166	3	9.0	3	100	0	54	33	0	0	66	0.92
50440539--50440599	3	20.3	3	74	12	54	32	1	1	63	1.13
50440545--50440686	12	11.4	12	68	17	76	35	1	3	59	1.23
50440517--50440691	86	2.0	86	98	0	341	36	1	5	57	1.28
50440624--50440680	15	3.7	15	76	6	53	29	1	3	64	1.20
50444556--50444624	23	3.0	23	89	0	93	20	20	21	37	1.94
50444607--50444665	21	2.9	21	82	2	75	20	25	20	33	1.97
50449781--50449935	24	6.2	25	70	10	104	38	21	23	16	1.93
50452299--50452351	15	3.4	15	78	19	63	45	0	9	45	1.36
50452290--50452381	34	2.6	34	85	13	125	42	0	13	44	1.43
50454862--50454933	26	2.8	26	85	2	83	43	9	16	30	1.80
50471005--50471053	21	2.3	22	86	10	66	51	6	0	42	1.27
50471002--50471055	22	2.4	23	82	14	69	50	5	0	44	1.25
50472088--50472118	16	1.9	16	100	0	62	58	3	6	32	1.40
50473694--50473854	87	1.9	87	83	0	214	36	25	14	23	1.93
50478115--50478162	16	3.0	16	100	0	96	37	25	12	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50481269--50481392	24	5.2	24	73	13	96	34	22	26	16	1.95
50481283--50481447	48	3.4	47	76	10	134	36	21	25	16	1.94
50481275--50481426	72	2.1	74	87	2	218	34	21	25	17	1.95
50481283--50481426	24	5.9	24	75	8	121	35	21	25	17	1.95
50481284--50481447	24	6.6	25	73	8	104	36	21	25	17	1.94
50481500--50481558	25	2.4	26	81	16	72	32	22	30	15	1.94
50484831--50484869	13	2.9	14	80	7	53	66	0	17	15	1.25
50487083--50487132	26	2.0	25	84	7	66	52	2	6	40	1.38
50494369--50494426	29	2.0	29	89	0	89	34	15	27	22	1.94
50496848--50496887	20	2.0	20	85	9	55	25	5	0	70	1.08
50497830--50497884	27	2.0	29	82	10	71	50	36	3	9	1.51
50498262--50498286	10	2.5	10	100	0	50	16	0	0	84	0.63
50498977--50499012	3	11.7	3	88	5	54	33	2	0	63	1.08
50500918--50500960	13	3.5	13	81	18	65	34	0	16	48	1.46
50500910--50500965	23	2.5	23	91	2	96	37	0	14	48	1.44
50506636--50506678	18	2.3	19	96	4	79	72	4	4	18	1.20
50506735--50506764	12	2.5	12	94	0	51	63	0	10	26	1.26
50510375--50510609	116	2.0	116	98	0	452	26	25	12	35	1.92
50518592--50518658	33	2.0	33	97	0	125	20	34	8	35	1.84
50521876--50521944	24	2.9	24	85	8	88	52	7	4	36	1.49
50522801--50522851	20	2.5	21	81	6	61	70	3	17	7	1.27
50523331--50523381	26	2.0	26	88	7	77	19	5	35	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50523765--50524319	44	12.8	44	69	8	154	27	25	18	28	1.98
50523752--50524409	218	3.0	218	91	0	1052	27	25	19	27	1.99
50523850--50524409	44	12.9	43	66	14	159	26	26	19	27	1.99
50523769--50524510	218	3.4	213	86	3	747	26	25	19	28	1.98
50524409--50524666	129	2.0	129	93	0	435	25	24	19	31	1.98
50530771--50530839	24	2.9	24	85	8	88	52	7	4	36	1.49
50535773--50535851	30	2.5	30	81	6	86	59	6	0	34	1.23
50535775--50535882	30	3.5	30	77	8	85	56	6	0	37	1.25
50535957--50535990	5	6.8	5	100	0	68	41	0	17	41	1.50
50538221--50538246	12	2.2	12	100	0	52	92	7	0	0	0.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216