genome.fa.s15.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  146  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46206103--46206164	23	2.7	23	82	2	72	46	1	1	50	1.20
46216176--46216232	30	1.9	30	85	0	78	42	10	15	31	1.81
46219407--46219440	15	2.2	16	89	5	52	32	2	0	64	1.08
46221435--46221518	30	2.7	30	89	10	118	34	3	0	61	1.13
46222669--46222704	16	2.2	16	100	0	72	16	27	19	36	1.93
46224253--46224394	71	2.0	71	91	0	230	35	18	18	28	1.94
46227400--46227459	20	3.0	20	81	11	63	38	0	6	55	1.27
46227400--46227437	19	2.1	19	95	5	69	39	0	5	55	1.23
46229416--46229458	21	2.0	21	90	0	68	41	0	18	39	1.51
46230163--46230224	31	2.0	31	81	6	72	46	0	11	41	1.39
46230573--46230603	11	2.9	11	95	4	55	74	0	25	0	0.82
46230928--46230971	23	1.9	24	90	9	74	54	0	20	25	1.45
46232783--46232864	24	3.3	24	74	14	69	14	29	21	34	1.93
46233030--46233102	25	3.0	25	80	6	69	20	26	20	32	1.97
46233902--46233940	21	1.9	19	85	10	51	30	0	23	46	1.53
46235534--46235650	49	2.4	49	97	0	216	21	23	18	35	1.95
46242896--46243308	30	13.8	30	85	2	544	42	17	10	29	1.82
46243223--46243285	28	2.4	25	80	15	67	41	17	9	31	1.82
46244393--46244434	20	2.0	21	86	13	61	30	7	16	45	1.74
46250835--46250870	19	1.9	18	88	5	54	2	11	22	63	1.39
46251642--46251739	49	2.0	49	100	0	196	22	20	16	40	1.91
46253498--46253523	11	2.4	11	100	0	52	38	7	0	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46253470--46253628	44	3.5	43	78	16	171	34	2	0	62	1.14
46253509--46253558	17	3.0	17	80	8	59	34	2	0	64	1.05
46253542--46253579	11	3.4	11	96	3	67	39	2	0	57	1.12
46253553--46253628	39	1.9	38	89	7	116	32	2	1	63	1.17
46255982--46256050	27	2.5	27	73	15	70	40	1	5	52	1.34
46259951--46260004	2	27.0	2	100	0	108	50	0	50	0	1.00
46261465--46261497	15	2.2	15	94	0	57	63	12	0	24	1.28
46262040--46262100	28	2.3	24	81	18	68	73	1	4	19	1.10
46262040--46262100	25	2.3	25	80	11	68	73	1	4	19	1.10
46263549--46264461	44	21.1	44	69	15	388	27	22	19	29	1.98
46263471--46264461	217	4.5	217	91	1	1531	27	22	20	29	1.98
46276209--46276242	15	2.2	16	89	5	52	64	11	0	23	1.26
46276786--46276827	20	2.2	20	86	4	59	76	0	2	21	0.90
46284756--46284816	31	2.0	31	90	6	97	60	0	1	37	1.07
46284756--46284849	12	8.9	11	73	18	67	59	0	2	38	1.09
46284756--46284942	42	4.5	41	84	9	245	62	0	2	34	1.09
46284791--46284824	17	2.0	17	88	0	50	64	0	0	35	0.94
46284773--46284838	31	2.1	30	86	10	89	63	0	3	33	1.10
46284756--46284943	11	18.2	11	68	21	59	62	0	2	34	1.09
46291898--46291944	24	2.0	24	84	16	62	34	0	14	51	1.43
46293483--46293521	13	3.1	13	85	3	53	12	28	28	30	1.93
46298453--46298637	40	4.6	40	85	5	205	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46298454--46298636	80	2.3	81	83	5	230	24	21	27	25	1.99
46317802--46317861	21	3.0	20	80	7	59	33	6	5	55	1.48
46323043--46323089	21	2.2	21	92	0	76	36	23	14	25	1.93
46328993--46329177	79	2.3	82	84	7	238	25	27	22	24	2.00
46328974--46329177	40	5.1	40	82	8	238	25	27	22	25	2.00
46332492--46332521	16	1.9	16	93	6	53	50	20	0	30	1.49
46332970--46333012	20	2.2	20	87	4	61	20	16	4	58	1.56
46337703--46337738	11	3.4	11	88	3	56	69	11	8	11	1.37
46337694--46337738	21	2.0	22	87	8	65	66	11	11	11	1.45
46340879--46340957	37	2.1	37	90	0	122	25	31	18	24	1.98
46341076--46341843	47	16.3	47	97	0	1340	28	30	9	31	1.89
46345206--46345471	40	6.7	40	90	1	399	26	28	21	22	1.99
46346684--46346762	37	2.1	37	90	0	122	25	31	18	24	1.98
46346881--46347592	47	15.0	47	97	1	1289	29	29	8	32	1.87
46352211--46352465	56	4.5	57	80	3	257	31	11	14	42	1.81
46352211--46352462	113	2.2	114	84	1	310	31	11	14	42	1.81
46352211--46352498	56	5.1	56	80	2	222	30	12	14	42	1.83
46353153--46353382	113	2.0	113	97	0	433	35	13	13	36	1.85
46366173--46366222	25	2.0	26	88	4	75	64	12	12	12	1.51
46370220--46370278	29	2.0	29	100	0	118	37	15	13	33	1.86
46379542--46379575	16	2.1	16	100	0	68	64	5	11	17	1.45
46380627--46380682	26	2.0	29	86	10	82	51	0	1	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46383499--46383810	43	7.3	43	87	4	432	27	32	16	23	1.96
46384086--46384180	43	2.2	43	90	0	145	45	9	11	33	1.73
46388229--46388255	6	4.5	6	100	0	54	55	0	0	44	0.99
46388411--46388464	27	2.0	27	100	0	108	22	18	3	55	1.58
46389070--46389121	7	7.4	7	86	0	77	34	50	0	15	1.45
46389062--46389121	21	2.8	20	80	9	75	33	48	0	18	1.48
46389165--46389211	14	3.5	13	80	13	51	31	48	2	17	1.58
46389598--46389643	20	2.4	20	82	7	51	63	4	4	28	1.33
46389650--46389842	41	4.7	41	82	7	248	30	29	23	17	1.97
46394944--46394986	16	2.6	16	81	7	50	55	2	2	39	1.25
46395666--46395764	52	2.1	46	85	14	130	50	5	8	36	1.54
46396592--46396845	124	2.0	124	100	0	508	36	9	14	39	1.79
46410535--46410590	29	1.9	29	82	7	69	19	10	16	53	1.71
46410946--46410992	24	1.9	25	86	4	69	19	31	12	36	1.89
46444714--46444751	20	1.9	20	94	0	67	23	7	0	68	1.16
46447836--46448287	47	9.6	47	95	0	760	28	29	8	33	1.86
46447886--46447964	25	3.3	25	66	16	76	31	29	5	34	1.79
46447836--46448287	237	1.9	235	95	0	823	28	29	8	33	1.86
46454233--46454262	11	2.6	11	94	5	51	36	3	0	60	1.14
46454554--46454606	21	2.5	20	76	8	52	35	1	11	50	1.49
46454773--46454930	25	6.3	25	77	10	119	31	19	22	25	1.98
46459632--46459693	21	3.0	21	68	0	52	14	24	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46459623--46459751	42	3.1	42	81	2	134	14	24	16	44	1.85
46461767--46461808	20	2.2	20	87	12	61	57	4	21	16	1.58
46464618--46464783	23	7.1	23	72	9	102	19	1	33	45	1.58
46464618--46464735	48	2.5	47	84	4	146	21	1	33	44	1.62
46465059--46465099	21	2.0	21	95	0	73	65	0	2	31	1.05
46468420--46468452	3	11.0	3	100	0	66	66	0	0	33	0.92
46470207--46470281	37	2.1	36	87	2	105	29	21	21	28	1.98
46470254--46470493	102	2.4	102	89	0	372	27	25	16	30	1.97
46470243--46470496	51	5.0	51	75	0	231	27	25	16	29	1.97
46470499--46470660	51	3.2	51	83	0	198	27	24	16	31	1.96
46470325--46470765	174	2.5	174	87	1	598	27	24	16	31	1.96
46472124--46472148	12	2.1	12	100	0	50	24	0	0	76	0.80
46472141--46472273	44	3.0	44	86	3	187	17	24	18	40	1.91
46472141--46472269	45	2.9	45	87	3	181	17	24	17	41	1.90
46473176--46473214	11	3.5	11	89	3	60	0	20	0	79	0.73
46473176--46473236	22	2.8	22	85	9	72	4	18	0	77	0.95
46476752--46476786	16	2.2	16	89	0	52	45	20	14	20	1.85
46485122--46485179	7	8.3	7	83	12	75	67	3	15	13	1.36
46486467--46487251	100	7.8	100	89	0	1072	34	23	19	23	1.96
46486467--46487224	50	15.2	50	71	3	475	34	23	19	23	1.97
46487549--46487620	26	2.8	26	85	8	103	43	37	5	13	1.68
46487551--46487620	14	5.4	13	72	17	65	41	38	5	14	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46487814--46487838	13	1.9	13	100	0	50	24	0	4	72	1.02
46490162--46490208	18	2.7	17	78	12	51	74	4	0	21	0.99
46490340--46490461	3	40.0	3	75	15	108	61	0	4	33	1.21
46493183--46493207	4	6.2	4	100	0	50	28	0	24	48	1.52
46493929--46493956	14	2.0	14	100	0	56	35	0	0	64	0.94
46494929--46494987	31	1.9	31	85	0	82	42	10	8	38	1.69
46496507--46496559	22	2.4	21	77	22	56	39	5	7	47	1.56
46496509--46496556	20	2.3	21	85	7	62	39	6	8	45	1.59
46498406--46498440	18	1.9	18	88	11	54	74	0	2	22	0.95
46504542--46504629	39	2.3	38	90	2	131	39	5	21	32	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216