genome.fa.s15.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  107  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33767528--33767554	5	5.4	5	100	0	54	62	18	0	18	1.32
33769014--33769052	13	3.2	12	86	13	53	15	2	7	74	1.15
33769060--33769092	15	2.2	15	94	0	57	24	0	12	63	1.28
33773291--33773354	22	3.1	21	68	23	55	57	12	10	18	1.63
33775878--33775933	28	1.9	28	85	7	76	17	39	0	42	1.50
33777821--33777858	19	2.0	19	89	0	58	34	23	7	34	1.84
33778547--33778663	41	2.8	40	82	8	137	35	1	0	62	1.11
33778581--33778644	30	2.1	30	91	5	103	34	1	0	64	1.03
33779648--33779707	29	2.1	28	84	6	77	30	10	8	51	1.64
33783085--33783124	18	2.2	18	86	4	53	12	27	0	60	1.33
33784172--33784212	14	2.9	14	100	0	82	21	14	0	63	1.30
33784245--33784286	12	3.5	12	90	0	66	14	7	11	66	1.43
33789767--33790104	169	2.0	169	96	0	622	30	19	15	35	1.92
33790507--33790595	35	2.5	35	81	1	106	24	23	11	40	1.87
33792731--33792771	3	13.7	3	100	0	82	65	0	0	34	0.93
33793208--33793316	8	12.6	8	67	19	51	29	3	1	65	1.20
33793232--33793315	20	4.3	20	70	23	63	30	3	1	64	1.18
33793239--33793316	19	4.1	18	79	14	68	29	3	1	65	1.18
33796161--33796323	75	2.2	75	81	6	195	48	12	12	25	1.77
33797292--33797345	25	2.2	24	83	3	63	64	3	1	29	1.21
33798553--33799206	116	5.6	117	72	11	411	16	17	16	48	1.81
33805956--33806025	31	2.3	31	85	2	88	21	14	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33809338--33809522	101	1.8	102	85	3	266	23	17	28	31	1.97
33809391--33809522	51	2.6	50	80	4	158	22	18	27	31	1.98
33809748--33809779	16	2.0	16	93	0	55	59	0	15	25	1.36
33811974--33812027	19	2.6	21	77	17	58	31	0	12	55	1.38
33814598--33814627	12	2.5	12	94	0	51	33	13	20	33	1.91
33818684--33818907	104	2.2	104	93	1	378	17	19	31	31	1.95
33818826--33818977	71	2.1	72	92	1	252	23	17	29	30	1.97
33820489--33820572	42	2.0	42	97	0	159	29	16	22	30	1.96
33822378--33822504	50	2.6	49	75	10	125	39	12	11	36	1.80
33823000--33823034	16	2.2	16	89	0	52	25	28	5	40	1.78
33841495--33841653	53	3.0	53	84	0	210	26	23	13	35	1.93
33843384--33843594	41	5.2	40	82	5	158	36	27	17	18	1.93
33843446--33843642	41	4.8	41	85	5	238	38	28	15	17	1.90
33843384--33843641	82	3.2	81	83	4	243	37	28	16	17	1.92
33844093--33844272	41	4.4	40	81	4	139	36	28	17	17	1.93
33844094--33844389	82	3.6	82	81	7	237	37	27	17	17	1.93
33844175--33844389	41	5.2	41	86	5	274	38	27	16	17	1.92
33847926--33848229	47	6.4	47	91	3	441	33	9	30	26	1.88
33851187--33851233	22	2.0	25	84	12	64	31	27	2	38	1.69
33858024--33858094	5	14.2	5	100	0	142	60	0	0	39	0.97
33858396--33858559	87	1.9	87	82	7	208	42	15	4	36	1.69
33860942--33860968	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33861873--33861914	22	2.0	22	86	13	61	33	9	0	57	1.31
33861873--33861914	21	2.0	21	86	13	59	33	9	0	57	1.31
33862518--33862765	119	2.1	119	89	3	374	22	21	30	25	1.99
33880256--33880290	18	1.9	18	94	0	61	51	22	0	25	1.48
33902500--33902561	18	3.3	18	77	8	61	32	1	1	64	1.13
33902502--33902544	21	2.0	21	86	8	61	32	2	2	62	1.20
33902567--33902610	21	2.0	22	86	8	63	31	4	2	61	1.28
33912687--33912881	40	4.9	40	86	5	268	43	25	15	15	1.86
33914526--33914686	40	4.0	40	86	3	225	44	26	14	14	1.84
33915247--33915291	20	2.2	20	88	0	63	26	15	13	44	1.83
33916183--33916251	23	3.1	21	77	8	66	42	30	4	23	1.73
33924122--33924186	20	3.2	20	73	0	67	35	20	35	9	1.84
33924119--33924210	40	2.3	41	77	9	100	34	19	33	11	1.89
33930197--33930394	102	1.9	102	94	0	351	29	11	24	34	1.90
33951882--33951976	49	2.0	49	83	6	122	24	15	20	40	1.91
33957209--33957691	47	10.1	47	93	3	799	31	8	30	29	1.87
33957209--33957691	96	5.1	96	94	3	802	31	8	30	29	1.87
33957810--33957888	37	2.1	37	88	0	113	24	17	31	26	1.97
33960510--33960557	3	15.7	3	78	4	51	37	6	0	56	1.25
33960876--33961184	144	2.1	149	86	7	436	43	4	9	42	1.57
33980029--33980210	25	7.4	25	86	1	217	20	23	18	37	1.94
33980144--33980236	22	4.1	21	79	9	78	18	23	18	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33980568--33980732	45	3.6	45	85	0	204	25	12	24	36	1.91
33982598--33982650	24	2.2	24	82	0	61	45	15	20	18	1.85
33984282--33984315	16	2.2	16	89	5	52	26	8	14	50	1.72
33988664--33988836	39	4.4	39	82	1	195	16	28	21	34	1.95
33988662--33988810	78	1.9	78	88	2	228	15	28	21	34	1.94
33988662--33988836	78	2.2	78	85	2	226	16	28	21	34	1.94
34007894--34007958	32	2.0	32	100	0	130	20	3	24	52	1.61
34038321--34038388	29	2.3	29	85	5	93	27	30	13	27	1.94
34038490--34038568	29	2.7	30	80	13	101	29	31	15	24	1.95
34046481--34046548	29	2.3	29	85	5	93	27	30	13	27	1.94
34046650--34046728	29	2.7	30	82	13	110	29	30	15	25	1.96
34048406--34048456	26	2.0	26	92	0	84	39	25	21	13	1.90
34048631--34048880	27	9.2	28	80	6	155	21	19	18	41	1.90
34048630--34048880	54	4.7	53	78	8	240	21	19	18	41	1.91
34048675--34048884	81	2.6	81	83	0	278	22	19	17	40	1.91
34054296--34054424	32	4.1	32	69	20	117	31	19	4	44	1.71
34054370--34054445	32	2.4	32	84	6	93	32	18	5	43	1.72
34058496--34058548	3	17.7	3	92	0	88	0	30	0	69	0.88
34060172--34060204	15	2.2	15	89	10	50	57	0	0	42	0.98
34060270--34060327	29	2.0	29	83	10	73	53	10	6	29	1.61
34078124--34078402	29	9.6	29	74	9	158	23	27	14	34	1.94
34078125--34078402	117	2.4	117	84	1	344	23	27	14	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34078335--34078397	30	2.2	30	85	5	85	28	30	12	28	1.93
34078347--34078412	30	2.2	29	84	7	87	24	28	15	31	1.95
34080644--34080808	29	5.7	29	84	2	215	38	23	14	24	1.92
34080626--34080811	58	3.2	59	90	4	281	38	22	13	25	1.91
34080651--34080830	87	2.1	87	84	2	227	36	23	13	26	1.93
34080626--34080815	29	6.6	29	77	8	190	38	23	13	24	1.91
34085105--34085246	44	3.3	42	84	4	176	30	25	19	24	1.98
34085083--34085246	86	1.9	87	84	3	224	28	25	18	28	1.98
34085083--34085227	44	3.3	44	82	5	179	26	24	19	29	1.98
34085315--34085348	16	2.1	16	88	0	50	55	8	0	35	1.31
34087168--34087198	7	4.4	7	100	0	62	41	16	0	41	1.48
34087881--34087913	13	2.5	13	95	0	57	21	45	6	27	1.75
34089827--34089858	16	2.0	16	93	0	55	31	0	21	46	1.52
34090560--34090622	15	4.3	15	84	9	60	47	28	1	22	1.60
34090821--34090870	14	3.5	14	79	15	57	32	44	0	24	1.54
34090832--34090879	22	2.2	22	92	0	78	35	45	0	18	1.50
34090811--34090872	14	4.4	14	74	11	54	33	43	0	22	1.54
34091277--34091560	41	6.8	41	78	8	259	34	26	17	21	1.95
34091277--34091517	130	1.9	130	80	6	283	34	26	17	21	1.95
34091393--34091605	41	5.2	40	85	4	178	34	27	17	20	1.95
34091393--34091560	81	2.1	80	88	3	246	35	27	17	19	1.95
34091393--34091602	82	2.6	81	82	3	199	34	26	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34091948--34092174	106	2.1	106	99	0	445	22	22	31	24	1.98
34095426--34095528	28	3.2	32	75	17	90	31	22	23	23	1.99
34095456--34095518	28	2.2	28	97	0	117	31	22	25	20	1.98
34095625--34095705	26	3.1	26	89	0	117	38	25	17	18	1.92
34103088--34103177	28	3.2	28	88	1	137	33	22	23	21	1.97
34104770--34104837	26	2.5	27	83	7	84	33	19	22	25	1.97
34105319--34105366	20	2.4	20	85	0	69	29	35	18	16	1.93
34109564--34109747	40	4.6	40	82	6	196	23	20	27	28	1.99
34109564--34109744	80	2.3	81	83	9	221	23	20	27	27	1.99
34109645--34109794	40	3.8	38	80	10	131	25	22	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216