genome.fa.s15.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  57  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16747422--16747631	96	2.2	95	84	3	269	38	22	19	20	1.93
16747422--16747662	96	2.5	96	80	4	254	37	22	19	19	1.94
16747668--16747719	26	2.0	26	96	0	95	44	19	19	17	1.87
16747833--16747915	24	3.5	23	83	4	76	49	22	6	21	1.71
16747874--16747920	23	2.0	23	95	0	85	48	23	4	23	1.68
16747936--16748069	26	5.1	26	85	8	175	24	24	20	30	1.98
16747936--16748066	53	2.5	54	87	4	180	25	24	19	30	1.98
16754862--16754891	13	2.3	13	94	0	51	46	3	0	50	1.18
16756047--16756096	15	3.3	15	72	25	50	20	24	10	46	1.81
16756877--16756936	29	2.1	29	87	0	84	46	15	8	30	1.74
16759794--16759988	45	4.3	45	90	0	291	24	18	15	41	1.90
16760328--16760374	20	2.3	20	92	0	76	31	17	29	21	1.96
16762054--16762132	29	2.7	29	78	4	77	50	17	5	26	1.67
16775911--16775964	22	2.5	21	71	14	56	64	1	7	25	1.30
16779670--16779708	16	2.4	16	86	0	51	51	2	5	41	1.38
16779641--16779696	22	2.5	23	85	2	78	55	1	0	42	1.10
16782350--16782387	20	1.9	20	89	10	60	13	2	7	76	1.11
16783915--16783958	14	3.3	14	75	12	56	40	0	4	54	1.21
16788474--16788513	18	2.2	19	86	4	55	20	30	5	45	1.72
16792511--16792561	23	2.2	23	85	0	66	29	7	19	43	1.79
16795462--16795517	21	2.7	21	88	0	85	26	8	35	28	1.87
16796099--16796326	113	2.0	113	94	0	402	35	18	14	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16802223--16802335	44	2.6	44	95	0	199	28	23	21	26	1.99
16802215--16802425	44	4.9	44	77	5	160	28	20	20	29	1.98
16802439--16803055	50	12.4	50	72	3	404	25	20	22	30	1.98
16802441--16802764	99	3.3	98	85	3	434	26	20	21	30	1.98
16802501--16803018	249	2.1	248	84	4	670	26	19	22	31	1.98
16802758--16803051	99	3.0	100	83	4	387	24	21	22	31	1.98
16803340--16803397	24	2.4	24	79	0	71	27	25	13	32	1.94
16804280--16804327	5	9.8	5	82	8	55	2	16	2	79	0.93
16814878--16814916	18	2.2	17	86	13	53	33	0	20	46	1.51
16815142--16815240	23	4.3	23	88	0	153	24	20	23	32	1.98
16819869--16819902	17	1.9	18	88	5	52	26	2	14	55	1.53
16819919--16819957	20	2.0	20	94	0	69	35	0	12	51	1.40
16820242--16820266	9	2.8	9	100	0	50	40	0	0	60	0.97
16823184--16823222	21	2.0	20	85	14	55	41	5	5	48	1.47
16827580--16827617	13	2.9	13	85	14	60	47	10	10	31	1.72
16830910--16830957	20	2.3	22	82	10	64	68	2	6	22	1.23
16831228--16831252	2	12.5	2	100	0	50	52	0	0	48	1.00
16831261--16831335	3	24.7	3	72	12	55	66	2	5	25	1.26
16832300--16832346	20	2.3	21	78	10	53	10	4	23	61	1.46
16837526--16837604	32	2.5	32	78	10	90	41	0	2	55	1.13
16842753--16842829	26	2.9	25	76	16	75	28	3	2	64	1.24
16845081--16845210	43	3.0	43	74	12	131	22	14	28	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16850155--16850262	43	2.6	42	77	10	121	26	23	18	31	1.97
16850385--16850911	31	17.2	31	74	9	211	44	17	6	31	1.75
16850384--16850913	61	8.6	61	77	5	442	44	16	6	32	1.74
16850422--16850967	92	5.9	92	88	0	716	44	17	6	31	1.75
16850439--16850967	276	1.9	276	88	0	799	44	17	6	31	1.74
16850959--16851012	25	2.2	24	80	9	63	50	9	11	29	1.69
16853256--16853364	23	5.0	22	81	6	125	36	22	20	20	1.95
16853560--16853636	36	2.1	37	85	7	104	32	22	1	44	1.61
16854342--16854371	11	2.7	11	89	0	51	0	16	0	83	0.65
16855212--16855250	13	3.1	13	89	10	55	51	2	0	46	1.14
16855316--16855348	13	2.8	12	90	9	50	63	0	0	36	0.95
16855341--16855377	13	2.8	13	91	0	56	56	5	0	37	1.22
16855336--16855404	36	1.9	35	82	8	86	63	5	0	30	1.17
16855390--16855486	36	2.7	35	80	13	92	75	5	5	14	1.15
16856262--16856303	15	2.8	15	85	7	59	71	2	4	21	1.16
16856442--16856484	17	2.5	18	88	7	63	23	0	6	69	1.12
16856442--16856487	18	2.6	19	80	13	62	23	0	6	69	1.11
16863558--16863768	29	7.2	29	72	10	162	36	12	27	24	1.91
16863558--16863861	59	5.2	59	86	2	416	37	11	26	24	1.90
16863558--16863860	116	2.6	117	88	2	430	37	11	26	24	1.90
16864133--16864171	20	1.9	20	89	5	60	38	20	0	41	1.53
16866934--16866970	18	2.1	18	94	0	65	24	8	5	62	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16866961--16867031	5	13.2	6	80	14	59	33	2	14	49	1.58
16866938--16867008	27	2.6	27	90	4	106	30	5	8	54	1.53
16866989--16867035	11	4.5	11	87	12	73	34	0	19	46	1.50
16866990--16867035	20	2.2	21	92	7	85	32	0	19	47	1.50
16871290--16871580	29	10.0	29	71	14	195	36	11	27	24	1.90
16871277--16871509	88	2.7	87	88	4	351	35	11	28	24	1.90
16871264--16871568	59	5.2	58	75	11	239	35	11	28	24	1.90
16871277--16871580	88	3.5	87	81	7	321	35	12	27	24	1.92
16872758--16872796	20	1.9	20	89	5	60	35	17	5	41	1.72
16881409--16881447	18	2.1	18	90	4	60	30	17	0	51	1.46
16881974--16882138	29	5.2	29	77	19	120	58	17	0	23	1.43
16881956--16882259	70	4.6	66	76	18	251	57	19	1	21	1.50
16882026--16882303	37	7.7	37	77	14	244	58	18	1	21	1.47
16882054--16882250	107	1.8	110	90	3	319	57	20	2	19	1.50
16882919--16882965	16	2.9	16	93	0	85	38	2	25	34	1.68
16896570--16896602	16	2.1	16	88	11	50	36	9	9	45	1.68
16905140--16905173	12	2.8	12	90	4	50	23	2	0	73	0.97
16909981--16910028	25	1.9	25	82	0	60	33	20	29	16	1.95
16910363--16910411	21	2.4	20	86	3	62	42	18	2	36	1.62
16910384--16910416	15	2.1	16	88	5	50	39	24	0	36	1.56
16910935--16910990	28	1.9	30	82	13	73	21	16	0	62	1.32
16917375--16917513	61	2.3	61	87	0	188	30	26	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16927296--16927468	74	2.3	74	89	2	258	33	13	21	30	1.93
16927933--16927985	26	1.9	27	88	11	81	67	0	1	30	1.01
16929662--16929720	27	2.2	27	93	0	100	49	5	15	30	1.66
16930617--16930669	24	2.2	25	86	3	72	32	5	13	49	1.65
16941113--16941246	50	2.7	50	82	3	162	23	19	28	29	1.98
16941113--16941254	51	2.8	50	81	3	169	23	19	28	28	1.98
16941250--16941356	46	2.4	43	83	10	119	26	16	21	35	1.95
16946630--16946770	39	3.6	39	86	1	185	30	3	21	44	1.69
16946715--16946756	22	1.9	22	85	9	59	28	0	23	47	1.52
16947414--16949181	464	3.9	439	87	5	2004	27	20	28	23	1.99
16947829--16949315	464	3.2	464	92	1	2340	27	20	29	22	1.99
16950627--16950823	48	4.1	48	82	2	252	26	21	29	22	1.99
16956733--16956924	9	21.1	9	71	13	74	21	5	4	69	1.26
16956733--16956816	15	5.6	15	71	18	59	23	3	1	71	1.09
16956733--16956867	23	5.4	26	70	24	69	22	5	1	71	1.14
16956735--16956872	11	11.6	11	67	22	57	21	5	2	71	1.17
16970157--16970208	27	1.9	27	96	0	95	15	36	21	26	1.93
16970224--16970296	28	2.6	28	87	8	103	26	0	10	63	1.27
16971170--16971217	22	2.2	22	100	0	96	18	33	8	39	1.81
16971535--16971633	44	2.2	44	92	0	162	6	30	2	61	1.31
16971535--16971645	44	2.5	44	88	2	134	6	30	1	61	1.31
16972341--16972380	19	2.1	19	100	0	80	42	15	5	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16974279--16974401	25	5.0	24	74	12	97	30	18	25	25	1.98
16982032--16982061	12	2.5	12	94	0	51	73	6	3	16	1.18
16983920--16984012	26	3.6	26	80	0	96	24	29	22	23	1.99
16992666--16992732	27	2.4	28	78	11	75	25	22	0	52	1.47
17021124--17021158	18	2.0	17	88	5	52	34	17	0	48	1.47
17031779--17031868	25	3.6	25	80	1	92	22	24	21	32	1.98
17032010--17032061	26	2.0	26	81	7	61	40	7	17	34	1.78
17035272--17035306	18	1.9	18	94	0	61	48	8	14	28	1.73
17041558--17041609	23	2.3	23	93	0	86	7	19	28	44	1.78
17048606--17048631	8	3.2	8	100	0	52	11	0	53	34	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216