genome.fa.s15.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  165  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51921884--51921937	20	2.8	20	85	2	74	44	7	9	38	1.65
51924200--51924237	12	3.2	12	92	0	58	31	5	34	28	1.80
51938319--51938360	3	14.0	3	94	0	75	64	0	2	33	1.07
51956318--51956350	15	2.1	16	88	5	50	36	24	6	33	1.80
51959266--51959341	36	2.1	36	95	0	134	35	26	11	26	1.91
51962421--51962500	26	3.1	26	79	0	79	35	26	21	17	1.95
51962695--51962731	18	2.1	18	100	0	74	29	5	16	48	1.68
51962714--51962895	81	2.2	81	83	4	233	24	15	17	42	1.87
51962714--51962902	27	7.0	27	78	4	166	24	15	17	41	1.89
51967736--51967764	15	1.9	15	100	0	58	20	3	0	75	0.94
51971048--51971077	13	2.4	12	94	5	51	26	0	0	73	0.84
51983740--51983788	22	2.1	24	85	7	66	18	8	12	61	1.55
51984468--51984521	19	2.7	19	77	5	54	14	44	1	38	1.56
51985733--51985770	17	2.2	17	90	0	58	57	5	0	36	1.21
51990134--51990367	41	5.7	41	91	0	387	28	20	29	22	1.98
51992378--51992541	43	3.9	42	80	10	190	29	15	24	30	1.96
52005349--52005394	24	1.9	24	86	8	67	34	2	13	50	1.53
52020124--52020182	30	2.0	30	89	0	91	59	8	3	28	1.43
52024947--52025118	63	2.7	63	81	0	200	33	33	8	25	1.86
52028448--52028473	6	4.3	6	100	0	52	50	0	0	50	1.00
52028735--52028786	26	2.0	26	85	7	70	32	5	5	55	1.47
52035762--52035849	39	2.2	40	95	4	160	50	4	1	44	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52035762--52035870	39	2.7	38	87	10	130	50	3	0	44	1.25
52035837--52035882	23	2.0	23	95	0	83	54	0	0	45	0.99
52035837--52035882	11	4.0	12	88	8	69	54	0	0	45	0.99
52036169--52036198	10	3.0	10	100	0	60	60	0	0	40	0.97
52036169--52036228	21	2.9	22	80	11	56	63	0	0	36	0.95
52036203--52036264	31	2.0	32	93	3	108	62	0	3	33	1.11
52041144--52041175	10	3.3	10	95	4	57	93	0	6	0	0.34
52041147--52041183	15	2.5	15	90	0	56	89	0	10	0	0.49
52041144--52041183	18	2.2	18	90	0	62	90	0	10	0	0.47
52042313--52042355	16	2.7	16	88	0	68	20	27	0	51	1.48
52045701--52045738	20	1.9	20	88	0	58	31	36	5	26	1.79
52047677--52047701	10	2.5	10	100	0	50	88	0	0	12	0.53
52049556--52049609	15	3.6	15	82	7	65	7	27	27	37	1.84
52058659--52058711	25	2.1	25	82	0	61	16	22	3	56	1.56
52063972--52064311	69	4.9	69	81	2	360	38	21	19	20	1.94
52078553--52078604	11	4.8	11	75	13	54	76	11	0	11	1.01
52078554--52078603	10	4.8	10	77	18	57	76	12	0	12	1.04
52078568--52078612	20	2.2	20	84	0	54	80	8	2	8	1.00
52079531--52079568	15	2.5	15	83	8	51	71	0	13	15	1.16
52080777--52081023	44	5.7	44	79	2	284	30	21	26	21	1.98
52080777--52081019	86	2.8	87	87	2	355	30	22	25	21	1.99
52081088--52081226	44	3.2	44	67	19	126	23	23	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52081018--52081343	88	3.7	88	87	1	467	27	23	25	23	2.00
52086633--52086673	20	2.0	20	90	0	64	29	24	9	36	1.87
52088042--52088164	65	2.0	60	86	13	173	38	12	13	35	1.83
52093885--52093916	12	2.6	13	85	14	50	56	6	0	37	1.25
52101778--52102313	285	1.9	285	94	2	952	23	18	10	47	1.79
52112955--52112994	20	2.0	20	90	0	62	27	12	12	47	1.77
52113427--52113454	13	2.2	13	100	0	56	32	0	14	53	1.41
52114833--52114858	12	2.2	12	100	0	52	46	15	7	30	1.74
52115564--52115615	18	2.9	18	70	0	59	42	3	38	15	1.65
52129872--52129928	30	1.9	30	100	0	114	35	8	28	28	1.87
52132505--52132566	30	2.1	30	87	6	90	48	8	8	35	1.62
52143622--52143672	22	2.3	22	83	6	59	64	9	9	15	1.48
52152606--52152782	62	2.9	61	80	5	162	37	3	15	42	1.66
52157789--52157828	2	20.0	2	100	0	80	50	0	0	50	1.00
52179795--52179841	23	2.0	24	83	4	60	42	4	4	48	1.42
52183934--52184105	68	2.5	68	82	0	218	35	15	22	27	1.94
52191128--52191180	23	2.3	23	81	12	65	41	22	1	33	1.65
52228865--52228905	20	2.0	20	95	0	73	41	9	12	36	1.76
52234735--52234801	30	2.2	30	86	5	91	17	34	26	20	1.96
52241953--52241983	7	4.6	7	92	8	55	74	0	12	12	1.08
52241954--52241983	13	2.3	13	100	0	60	73	0	13	13	1.10
52243234--52243979	128	5.9	128	90	5	1225	30	19	25	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52243972--52244182	44	4.9	44	74	8	164	30	15	22	31	1.95
52244029--52244227	41	4.7	41	70	14	136	28	17	23	30	1.97
52243972--52244235	129	2.0	129	92	2	442	29	16	24	29	1.97
52243989--52244273	129	2.2	128	85	6	335	29	17	23	29	1.97
52245387--52245430	22	1.9	24	81	9	56	20	22	40	15	1.90
52263371--52263423	18	2.9	18	82	2	61	41	45	1	11	1.51
52263476--52263530	26	2.2	25	81	12	67	32	7	18	41	1.78
52263551--52263644	9	10.4	9	83	4	109	25	11	22	40	1.88
52265593--52265645	13	4.1	13	80	9	54	35	1	0	62	1.06
52265591--52265642	26	2.0	26	85	7	70	32	1	0	65	1.04
52277458--52277529	24	2.9	24	80	12	83	56	16	0	26	1.40
52277464--52277535	23	3.0	24	83	6	92	54	18	0	27	1.44
52277464--52277538	24	3.1	24	76	7	80	53	18	0	28	1.45
52285301--52285348	18	2.7	18	83	6	62	27	8	16	47	1.75
52295275--52295540	104	2.5	104	89	4	401	29	30	20	19	1.97
52295868--52295932	30	2.2	29	81	8	76	30	27	6	35	1.81
52295875--52295932	30	1.9	30	85	0	80	31	24	6	37	1.82
52302739--52303003	103	2.6	104	90	3	417	29	29	20	19	1.97
52303331--52303395	30	2.2	29	81	8	76	30	27	6	35	1.81
52303338--52303395	30	1.9	30	85	0	80	31	24	6	37	1.82
52310389--52310440	25	2.1	25	92	0	86	36	17	15	30	1.91
52311142--52311180	19	2.1	19	85	0	51	35	0	2	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52315087--52315125	18	2.2	18	86	9	53	17	0	7	74	1.05
52317023--52317087	31	2.1	31	83	8	80	44	7	4	43	1.53
52318470--52318594	27	4.6	27	79	0	133	21	30	26	21	1.98
52318473--52318594	54	2.3	54	85	2	165	22	30	27	20	1.98
52318838--52318869	3	10.7	3	100	0	64	34	0	0	65	0.93
52319011--52319114	45	2.3	44	90	1	163	25	4	30	39	1.76
52319024--52319131	45	2.6	43	85	10	143	29	3	30	36	1.75
52319230--52319273	19	2.3	19	88	7	63	59	2	2	36	1.23
52326360--52327764	317	4.4	316	94	1	2402	30	10	7	50	1.65
52326360--52327764	633	2.2	634	94	1	2487	30	10	7	50	1.65
52328122--52328263	14	9.9	14	68	23	64	1	28	0	70	0.96
52328123--52328169	16	2.8	16	76	17	51	2	27	0	70	0.99
52328146--52328265	10	11.6	10	70	19	52	1	29	0	69	0.98
52328089--52328170	29	2.6	31	75	21	82	1	34	0	64	1.01
52328120--52328273	44	3.7	41	85	11	181	1	30	0	68	0.98
52328178--52328239	18	3.4	18	77	6	63	0	32	0	67	0.91
52328191--52328265	22	3.8	19	75	15	71	0	29	0	70	0.87
52328152--52328263	28	4.6	24	71	25	83	1	26	0	71	0.96
52332151--52332289	69	2.0	70	92	5	237	37	17	17	27	1.92
52332674--52332704	16	1.9	16	100	0	62	38	0	9	51	1.35
52332802--52332849	23	2.1	23	85	14	64	56	2	8	33	1.41
52333135--52333218	3	27.3	3	80	7	89	61	3	2	32	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52335553--52335590	9	4.2	9	86	0	58	42	2	36	18	1.64
52336558--52336591	16	2.1	17	88	5	52	26	29	2	41	1.70
52348869--52348949	5	16.2	5	77	10	85	79	2	2	16	0.96
52348978--52349008	16	1.9	16	93	0	53	74	12	9	3	1.19
52351710--52351775	34	1.9	34	100	0	132	37	16	9	36	1.81
52359964--52360001	15	2.6	14	91	8	58	0	15	0	84	0.63
52363559--52363619	31	1.9	32	90	3	97	40	8	3	47	1.49
52366632--52366674	19	2.3	18	84	7	59	74	2	0	23	0.93
52367454--52367494	20	2.0	21	85	9	57	21	0	12	65	1.25
52371177--52371223	4	11.8	4	100	0	94	25	0	23	51	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216