genome.fa.s15.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  95  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29471162--29471230	35	1.9	36	97	2	131	52	18	2	26	1.60
29471198--29471267	27	2.5	28	81	6	81	52	21	2	22	1.60
29472671--29472726	17	3.1	17	72	18	58	21	12	25	41	1.88
29474918--29474984	25	2.6	25	83	11	73	41	8	23	25	1.83
29480152--29480185	17	2.0	17	100	0	68	35	17	0	47	1.48
29484522--29484551	15	1.9	16	93	6	53	50	6	0	43	1.28
29484556--29484853	59	5.1	58	66	14	196	52	4	1	41	1.31
29484727--29484759	18	1.9	17	88	11	50	57	0	3	39	1.14
29484476--29484936	123	3.8	120	93	4	738	50	4	1	42	1.34
29484786--29484832	23	2.0	24	84	15	64	53	4	2	40	1.32
29484813--29484871	26	2.3	25	85	8	82	57	0	0	42	0.98
29484850--29484882	18	1.9	17	88	11	50	57	0	3	39	1.14
29484713--29484904	64	3.1	64	67	18	195	50	3	3	42	1.37
29484729--29484926	59	3.3	58	71	17	195	48	4	4	42	1.42
29484744--29484936	64	3.1	64	70	18	215	47	5	4	43	1.44
29489660--29489772	41	2.8	41	98	0	217	24	23	28	23	2.00
29490648--29490751	49	2.1	49	89	3	156	50	8	9	31	1.66
29492494--29492559	33	2.0	33	96	0	123	37	3	18	40	1.66
29492768--29492804	19	1.9	19	94	0	65	35	0	21	43	1.53
29493105--29493139	18	1.9	18	88	0	52	37	0	5	57	1.23
29495574--29495615	21	2.0	21	100	0	84	14	33	19	33	1.91
29503605--29503702	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29503633--29503715	27	3.0	27	87	5	96	30	12	25	32	1.92
29503605--29503716	28	4.0	27	83	6	98	28	12	25	33	1.92
29511469--29511566	27	3.5	28	90	2	135	26	13	28	31	1.94
29511497--29511579	27	3.0	27	87	5	96	30	12	25	32	1.92
29511469--29511580	28	4.0	27	83	6	98	28	12	25	33	1.92
29514296--29514365	13	5.4	13	74	16	56	42	2	2	51	1.31
29514293--29514360	18	3.3	22	62	26	58	41	2	2	52	1.31
29514300--29514379	39	2.1	39	100	0	160	41	5	2	51	1.37
29515265--29515304	22	1.9	21	85	10	55	40	2	0	57	1.12
29517037--29517083	23	2.0	23	95	0	85	14	21	27	36	1.93
29517951--29518007	24	2.3	24	87	6	87	22	8	17	50	1.73
29519016--29519065	24	2.1	24	100	0	100	40	20	16	24	1.91
29519634--29519720	45	2.0	44	82	11	106	40	27	3	28	1.73
29522949--29523147	43	4.6	43	75	9	163	28	15	25	30	1.96
29528914--29529015	49	2.2	45	84	7	132	30	15	7	46	1.74
29533412--29533511	49	2.0	49	82	3	121	32	16	10	42	1.81
29539766--29539790	12	2.1	12	100	0	50	20	0	8	72	1.10
29541894--29541921	3	9.3	3	100	0	56	32	35	32	0	1.58
29548063--29548103	16	2.6	16	80	0	55	53	7	9	29	1.60
29548831--29548867	19	1.9	19	88	0	56	45	0	2	51	1.15
29564343--29564526	51	3.6	50	78	3	199	30	27	17	24	1.97
29564341--29564525	101	1.8	101	89	3	291	30	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29569553--29569600	6	7.8	6	84	13	53	77	0	2	20	0.88
29569554--29569600	16	3.0	16	75	6	51	76	0	2	21	0.89
29584004--29584028	7	3.6	7	100	0	50	48	12	0	40	1.40
29586327--29586371	21	2.1	21	100	0	90	55	17	4	22	1.60
29590656--29591048	140	2.8	137	88	3	599	41	8	5	44	1.58
29590764--29590982	71	3.1	70	64	19	166	41	7	5	46	1.55
29594423--29594472	18	2.8	17	76	8	55	8	34	16	42	1.77
29598315--29598688	134	2.8	132	81	5	432	20	16	21	42	1.89
29598317--29598701	27	14.4	27	82	4	370	20	16	21	42	1.89
29606671--29606707	6	6.2	6	100	0	74	67	0	32	0	0.91
29611161--29611202	21	2.0	21	95	0	75	35	23	7	33	1.82
29618091--29618155	20	3.3	19	73	16	51	38	16	21	23	1.93
29628778--29629190	140	3.0	139	88	4	611	38	8	6	46	1.61
29633585--29633653	26	2.7	26	81	0	84	26	27	21	24	1.99
29640525--29640554	15	2.0	15	93	0	51	76	0	10	13	1.01
29641822--29641879	23	2.4	25	85	5	75	22	6	25	44	1.77
29643718--29643744	14	1.9	14	100	0	54	37	29	11	22	1.89
29644409--29644462	16	3.3	17	73	17	51	53	1	0	44	1.11
29644907--29644945	18	2.2	18	86	4	53	28	0	2	69	1.02
29648476--29648578	47	2.3	45	91	6	172	28	6	7	57	1.53
29648488--29648583	47	2.0	47	100	0	192	27	6	10	56	1.57
29648948--29649264	107	3.0	106	92	0	535	32	17	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29659944--29659986	22	2.0	23	86	9	63	30	18	2	48	1.60
29660494--29661379	128	6.9	128	89	0	1333	33	20	20	25	1.97
29660627--29661250	84	7.3	86	65	13	261	33	20	20	25	1.97
29660528--29661394	84	10.2	86	66	11	217	34	21	20	24	1.97
29662101--29662138	17	2.3	17	95	4	69	18	0	5	76	0.97
29663106--29663136	15	2.1	15	93	0	53	19	0	16	64	1.29
29663387--29663704	108	3.0	106	86	1	456	31	16	16	36	1.91
29671930--29671971	11	3.7	11	90	6	66	78	4	7	9	1.08
29671930--29671972	12	3.7	12	93	3	70	79	4	6	9	1.06
29682313--29682356	22	2.0	22	90	0	70	20	11	11	56	1.64
29682389--29682447	30	2.0	30	100	0	118	27	5	10	57	1.52
29685166--29685224	25	2.4	25	83	11	68	67	1	5	25	1.20
29689549--29689674	50	2.6	50	82	2	148	36	8	23	31	1.85
29699072--29699165	47	2.0	47	95	0	170	26	13	26	32	1.94
29701158--29701187	15	1.9	16	93	6	53	13	10	6	70	1.34
29712691--29712754	21	3.2	20	70	20	62	57	12	10	18	1.63
29718031--29718069	21	1.9	21	89	5	62	66	2	25	5	1.25
29726006--29726059	23	2.4	23	93	3	92	22	9	5	62	1.45
29730923--29730963	20	2.0	20	100	0	82	24	7	9	58	1.55
29732528--29732613	38	2.2	39	85	4	120	37	31	18	12	1.89
29735257--29735309	20	2.7	20	74	8	56	67	7	0	24	1.16
29736480--29736523	21	2.1	21	87	4	63	59	0	2	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29736510--29736545	17	2.1	17	94	0	63	80	0	2	16	0.83
29737739--29737780	14	2.7	16	78	17	52	71	7	0	21	1.09
29740751--29740812	18	3.5	17	85	12	72	16	6	0	77	0.97
29740751--29740793	22	2.0	22	90	9	70	16	4	0	79	0.90
29740765--29740814	18	2.8	18	90	6	75	18	6	0	76	0.99
29742727--29742758	6	5.2	6	96	3	55	15	18	0	65	1.27
29747412--29747469	24	2.4	25	80	8	66	53	1	8	36	1.42
29749196--29749443	131	1.9	132	84	4	340	27	25	19	27	1.99
29749263--29749498	131	1.8	131	80	1	285	26	25	19	28	1.98
29749444--29749940	45	11.0	45	88	0	726	30	24	15	28	1.96
29751206--29751297	46	2.0	45	91	2	148	11	21	20	45	1.83
29752186--29752224	5	7.8	5	88	11	62	0	17	0	82	0.68
29752186--29752225	20	2.1	19	95	4	71	0	17	0	82	0.67
29755986--29756043	24	2.4	25	80	8	66	53	1	8	36	1.42
29756225--29756262	15	2.6	15	87	4	51	60	7	2	28	1.38
29757664--29757801	72	1.9	72	92	0	231	52	16	9	21	1.71
29762358--29762411	22	2.5	22	79	11	58	74	9	9	7	1.23
29763249--29763485	128	1.9	128	84	5	327	39	13	13	33	1.84
29763507--29763747	120	2.0	120	92	0	401	37	6	19	36	1.77
29769816--29769907	13	7.0	13	71	9	62	40	4	18	36	1.71
29780241--29780418	27	6.6	27	79	3	115	28	28	16	26	1.97
29780241--29780418	54	3.3	55	80	10	204	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29780262--29780417	82	1.9	81	85	3	215	28	28	16	26	1.97
29788322--29788499	27	6.6	27	79	3	115	28	28	16	26	1.97
29788322--29788499	54	3.3	55	80	10	204	28	28	16	26	1.97
29788343--29788498	82	1.9	81	85	3	215	28	28	16	26	1.97
29791583--29791745	76	2.1	76	80	8	179	36	6	18	38	1.76
29791940--29792034	41	2.3	41	94	0	163	29	21	23	26	1.99
29793945--29794027	34	2.5	34	80	7	82	38	4	16	39	1.70
29794279--29794423	41	3.5	41	88	0	218	26	19	29	24	1.98
29802359--29802397	20	2.0	20	90	10	62	71	7	2	17	1.21
29803201--29803316	45	2.6	45	79	6	128	25	21	21	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216