genome.fa.s15.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  136  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43168167--43168363	51	3.9	52	79	5	206	28	28	18	23	1.98
43168175--43168359	101	1.8	101	87	3	273	29	28	18	23	1.98
43168170--43168397	101	2.2	101	79	3	262	29	27	17	25	1.97
43172401--43172483	39	2.1	39	100	0	166	60	4	14	20	1.52
43181491--43181544	28	1.9	28	100	0	108	38	20	14	25	1.91
43188213--43188272	29	2.1	29	100	0	120	45	16	3	35	1.64
43190282--43190313	13	2.4	14	94	5	57	34	6	18	40	1.76
43199096--43199302	104	2.0	105	91	0	335	28	17	25	28	1.97
43202705--43202765	32	1.9	32	93	3	106	44	8	21	26	1.80
43212754--43212801	23	2.3	19	77	19	51	52	10	8	29	1.65
43213053--43213258	88	2.3	88	81	1	225	38	18	23	18	1.93
43212985--43213266	22	12.8	22	69	6	169	37	18	25	17	1.93
43214591--43214753	30	5.3	30	73	16	120	53	14	4	27	1.61
43214741--43214791	25	2.0	25	88	0	75	49	17	1	31	1.58
43214741--43214791	12	4.1	12	77	7	57	49	17	1	31	1.58
43221776--43221813	18	2.1	18	100	0	76	47	26	5	21	1.71
43222042--43222076	14	2.5	14	90	0	52	42	40	0	17	1.49
43223442--43223466	13	1.9	13	100	0	50	0	8	28	64	1.22
43224187--43224229	19	2.2	20	87	4	61	27	2	16	53	1.55
43224626--43224651	4	6.5	4	100	0	52	76	0	0	23	0.78
43231094--43231239	40	3.7	40	84	7	181	26	27	22	23	2.00
43238730--43238763	13	2.6	13	86	13	52	41	2	0	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43241301--43241470	41	4.2	40	81	3	162	32	27	22	16	1.96
43241341--43241498	41	3.9	41	82	4	144	32	29	23	14	1.94
43241538--43241636	40	2.5	40	84	0	126	18	21	26	34	1.96
43243692--43243743	24	2.2	24	89	0	77	53	7	3	34	1.48
43247107--43247156	18	2.8	19	73	14	61	66	0	0	34	0.92
43247122--43247177	28	2.0	27	86	3	76	66	1	0	32	1.03
43248239--43248266	2	14.0	2	100	0	56	50	0	0	50	1.00
43248804--43248850	17	2.6	18	78	21	62	27	6	0	65	1.16
43251494--43251594	45	2.2	45	85	0	130	17	20	21	39	1.92
43254375--43254426	24	2.3	23	83	6	61	21	9	7	61	1.51
43271247--43271298	15	3.7	15	75	19	58	15	5	0	78	0.92
43271244--43271299	21	2.7	21	80	2	69	16	5	0	78	0.92
43288399--43288524	49	2.6	49	83	0	162	26	31	15	26	1.95
43295291--43295478	51	3.7	51	76	9	190	26	17	27	29	1.97
43296267--43296345	37	2.1	37	90	0	122	25	31	18	24	1.98
43296464--43296878	47	8.7	47	94	2	704	29	29	8	32	1.86
43296464--43296878	96	4.4	94	95	1	704	29	29	8	32	1.86
43296464--43296878	143	2.9	143	94	0	726	29	29	8	32	1.86
43298613--43298639	13	2.1	13	100	0	54	29	14	14	40	1.86
43299548--43299579	16	2.0	16	93	0	55	59	0	15	25	1.36
43302878--43302943	23	2.9	23	79	4	71	39	24	15	21	1.91
43311083--43311157	36	2.1	36	95	5	134	40	8	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43324607--43324681	29	2.5	30	82	8	91	41	25	16	17	1.89
43325986--43326030	24	1.9	23	86	4	63	40	22	17	20	1.92
43325453--43326424	324	3.0	324	92	0	1633	30	19	21	29	1.97
43327757--43327856	5	19.6	5	66	25	50	73	2	5	20	1.12
43327740--43327790	26	1.9	27	84	11	70	74	0	1	23	0.92
43327809--43327857	19	2.5	19	78	15	55	71	0	4	24	1.03
43327828--43327881	23	2.5	21	81	6	63	66	0	3	29	1.09
43343517--43343551	6	5.5	6	87	12	52	80	0	0	20	0.72
43347504--43347945	36	12.0	36	81	6	478	29	14	20	35	1.92
43347504--43347945	73	6.0	73	81	4	480	29	14	20	35	1.92
43347543--43347945	109	3.7	109	86	3	560	29	14	20	35	1.92
43350048--43350076	12	2.3	13	94	5	51	48	0	0	51	1.00
43356385--43356431	25	2.0	23	87	8	67	25	0	17	57	1.40
43356583--43356616	17	2.0	17	88	0	50	35	11	8	44	1.72
43367564--43367764	43	4.7	43	81	2	224	27	28	17	25	1.98
43368125--43368215	43	2.1	43	85	2	121	45	10	10	32	1.75
43372850--43372898	14	3.4	14	77	5	53	48	30	2	18	1.59
43372948--43373046	49	2.0	49	100	0	198	46	13	0	40	1.43
43373488--43373553	7	9.4	7	77	0	51	36	36	0	27	1.57
43373485--43373528	14	3.1	14	86	0	70	34	43	0	22	1.54
43373820--43373997	7	24.9	7	67	8	54	45	32	1	20	1.61
43373821--43373997	14	11.9	14	66	17	72	45	32	1	20	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43373892--43373997	21	5.0	21	68	13	63	47	30	1	20	1.61
43374229--43374342	41	2.8	42	88	5	153	28	32	20	19	1.97
43384859--43385125	115	2.3	116	89	8	406	37	12	17	32	1.87
43385241--43385662	111	4.0	106	79	11	488	29	16	14	39	1.88
43385245--43385682	211	2.1	212	90	3	695	27	16	13	41	1.86
43387723--43388030	40	7.3	42	71	14	222	33	23	19	23	1.97
43387780--43387952	44	4.1	40	67	19	111	32	24	20	23	1.98
43387723--43388055	128	2.6	127	92	2	562	33	22	20	23	1.97
43389114--43389192	39	2.0	39	100	0	158	15	7	7	69	1.34
43389673--43389715	20	2.2	20	88	8	63	44	16	0	39	1.48
43390196--43390424	110	2.1	106	79	13	257	34	17	15	32	1.92
43397718--43397755	15	2.5	15	84	12	51	73	0	0	26	0.83
43397726--43397756	16	2.0	16	93	6	55	74	0	0	25	0.82
43398590--43398641	3	17.3	3	100	0	104	67	0	0	32	0.91
43399213--43399369	61	2.8	52	76	15	154	24	17	18	39	1.92
43402359--43402420	6	10.5	6	73	3	54	45	1	17	35	1.59
43402359--43402420	18	3.5	18	74	12	65	45	1	17	35	1.59
43402601--43402642	11	3.7	11	83	3	57	54	2	11	30	1.49
43402629--43402668	17	2.4	17	95	0	71	57	0	5	37	1.21
43402629--43402675	17	2.7	17	90	3	58	61	0	6	31	1.21
43402811--43402936	38	3.5	38	70	15	131	64	3	7	24	1.36
43402822--43402984	71	2.3	71	94	2	283	63	4	9	22	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43402945--43403008	26	2.7	23	82	7	65	64	4	10	20	1.43
43403058--43403091	17	2.0	17	94	0	59	55	5	14	23	1.61
43402906--43403209	124	2.5	118	81	11	350	59	4	11	24	1.51
43403360--43403402	20	2.2	20	83	8	52	67	2	11	18	1.32
43404658--43404901	88	2.7	88	86	4	294	58	10	5	25	1.54
43405398--43405555	50	3.1	51	68	13	137	39	17	17	26	1.91
43405414--43405567	50	3.1	50	73	1	164	40	16	17	24	1.90
43409974--43410283	157	2.0	157	94	0	539	47	4	3	44	1.41
43410413--43410480	16	4.2	16	94	0	118	38	33	0	27	1.57
43418313--43418372	19	3.0	20	92	4	104	43	23	28	5	1.74
43418459--43418508	25	2.0	25	100	0	100	48	20	12	20	1.80
43425132--43425172	18	2.2	18	86	4	55	14	12	4	68	1.36
43433565--43433621	25	2.3	25	84	3	80	42	14	10	33	1.79
43436469--43436514	20	2.3	20	84	0	56	56	2	2	39	1.24
43436484--43436525	20	2.1	20	86	8	59	50	2	2	45	1.27
43438036--43438063	3	9.3	3	100	0	56	64	0	0	35	0.94
43439708--43439742	18	2.0	17	88	5	52	60	0	5	34	1.21
43439772--43439829	29	2.0	29	86	0	80	56	3	5	34	1.38
43439735--43439832	39	2.6	37	81	12	101	55	2	7	35	1.39
43440457--43440489	12	2.7	13	86	13	52	33	0	0	66	0.92
43440962--43441018	19	3.1	19	82	12	73	38	1	0	59	1.08
43440962--43441158	10	20.3	10	64	17	53	39	4	3	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43440962--43441009	18	2.6	17	87	9	60	39	0	0	60	0.97
43441033--43441108	29	2.6	29	79	4	82	34	6	2	56	1.39
43441085--43441119	17	2.0	17	88	5	52	37	2	0	60	1.12
43440962--43441119	9	16.7	9	66	17	54	38	5	2	53	1.36
43447676--43448228	43	12.9	43	86	1	646	38	22	18	20	1.93
43454368--43454424	25	2.3	24	78	3	69	24	26	21	28	1.99
43462124--43462238	25	4.6	25	75	10	94	21	23	24	30	1.99
43472521--43472612	45	2.0	45	85	0	121	27	13	16	43	1.84
43473442--43473495	25	2.2	25	83	12	67	48	1	3	46	1.30
43495583--43495621	20	2.0	20	94	0	69	43	0	2	53	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216