genome.fa.s15.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  147  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46505853--46506117	132	2.0	132	92	0	440	32	27	15	24	1.96
46510405--46510535	40	3.3	39	76	7	131	25	15	25	34	1.95
46510403--46510508	37	2.7	38	81	5	124	25	15	27	32	1.95
46513085--46513179	39	2.4	40	79	11	115	40	23	7	29	1.81
46513105--46513166	19	3.2	19	81	4	88	40	22	9	27	1.85
46513024--46513177	20	7.8	19	73	10	96	42	17	9	29	1.81
46513471--46513603	19	7.0	19	68	10	83	26	12	15	45	1.82
46514284--46514328	20	2.3	20	84	3	65	44	0	6	48	1.29
46517303--46517346	20	2.2	20	84	8	54	40	38	0	20	1.53
46517407--46517511	7	15.3	7	70	16	51	18	1	33	46	1.60
46517405--46517443	20	2.0	20	89	0	60	20	0	33	46	1.51
46517407--46517491	20	4.2	20	70	14	57	17	2	31	48	1.60
46524086--46524113	14	2.0	14	100	0	56	42	28	0	28	1.56
46528151--46528202	24	2.2	24	85	0	68	50	7	3	38	1.50
46531752--46531858	40	2.7	40	84	5	119	25	27	20	27	1.99
46531795--46531925	40	3.3	39	86	4	181	29	27	19	23	1.99
46531758--46531925	80	2.1	80	81	5	189	27	27	19	25	1.99
46539627--46539773	40	3.7	40	83	5	120	25	27	21	25	2.00
46539673--46539853	80	2.3	80	83	9	219	27	27	20	23	1.99
46539670--46539853	40	4.6	40	81	7	196	28	27	20	23	1.99
46544129--46544186	9	6.4	9	91	0	89	46	22	6	24	1.76
46544293--46544336	18	2.4	18	80	0	52	18	2	36	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46546363--46546494	64	2.0	64	82	7	158	40	6	9	43	1.65
46548346--46548383	20	1.9	20	84	10	51	50	2	0	47	1.15
46576612--46576796	51	3.6	50	84	2	217	32	27	15	24	1.95
46582059--46582089	9	3.4	9	90	0	53	25	12	22	38	1.90
46582142--46582178	9	4.1	9	92	0	65	45	13	10	29	1.77
46582229--46582288	30	2.0	31	90	3	95	20	33	0	46	1.51
46585102--46585325	40	5.6	40	86	7	287	23	22	28	25	2.00
46585101--46585358	119	2.2	119	82	6	301	24	22	27	25	2.00
46593333--46593556	40	5.6	40	86	7	287	23	22	28	25	2.00
46593332--46593589	119	2.2	119	82	6	301	24	22	27	25	2.00
46610252--46610325	28	2.6	28	80	4	87	21	18	27	32	1.97
46610543--46610619	14	5.5	14	72	6	66	20	20	29	28	1.98
46610530--46610633	28	3.7	27	79	5	118	24	22	26	26	2.00
46610579--46610635	14	4.1	14	83	0	69	26	19	26	28	1.99
46620018--46620067	22	2.2	23	82	13	68	20	10	6	64	1.45
46620021--46620070	21	2.3	23	89	6	77	20	10	8	62	1.52
46625389--46625452	4	17.0	4	81	15	59	70	0	29	0	0.88
46625388--46625452	11	6.2	10	73	21	53	69	0	30	0	0.89
46625388--46625452	13	4.9	13	73	21	55	69	0	30	0	0.89
46625610--46625716	52	2.0	53	90	1	171	31	0	13	55	1.38
46625848--46625971	67	1.9	65	81	3	149	23	0	20	54	1.49
46625913--46626231	103	3.1	104	84	9	370	27	0	15	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46628228--46628261	13	2.6	13	85	0	50	41	38	0	20	1.53
46628363--46628456	9	10.4	9	84	0	125	24	9	23	42	1.84
46629201--46629375	79	2.3	76	90	3	269	26	6	7	59	1.49
46632198--46632283	41	2.1	40	82	8	102	34	3	11	50	1.56
46654112--46654151	21	2.0	20	85	5	53	60	5	0	35	1.19
46655810--46655964	72	2.2	72	78	0	166	33	24	16	25	1.95
46662434--46662468	5	7.4	5	93	6	56	37	0	0	62	0.95
46674171--46674214	22	2.0	23	91	8	74	54	4	0	40	1.21
46674151--46674225	36	2.1	37	87	7	109	54	4	0	41	1.19
46674170--46674217	21	2.2	21	86	13	71	56	4	0	39	1.19
46679154--46679201	25	1.9	25	95	0	87	60	4	0	35	1.16
46679208--46679276	21	3.5	19	81	13	77	49	0	8	42	1.34
46679253--46679315	29	2.2	29	83	11	76	53	0	6	39	1.26
46679271--46679369	19	5.4	17	73	12	63	57	1	4	37	1.24
46679605--46679642	18	2.2	17	90	4	58	76	2	0	21	0.91
46679700--46679758	15	3.8	16	78	15	61	66	0	1	32	1.02
46680237--46680272	3	12.0	3	100	0	72	0	33	0	66	0.92
46680933--46680976	16	2.8	16	71	0	52	13	0	31	54	1.39
46682612--46682706	43	2.2	43	86	3	129	24	15	28	31	1.96
46682978--46683008	15	2.1	15	100	0	62	29	6	25	38	1.81
46684619--46684666	14	3.3	14	85	11	53	64	2	2	31	1.16
46684616--46684670	23	2.4	22	81	9	65	65	1	1	30	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46684616--46684666	8	6.5	8	78	13	52	64	1	1	31	1.15
46684620--46684666	16	3.1	15	84	12	60	63	2	2	31	1.18
46684794--46684877	22	3.7	22	78	10	80	54	5	7	32	1.52
46684817--46684877	24	2.7	23	84	5	79	52	6	8	32	1.57
46684899--46685031	25	5.6	25	71	13	93	58	2	3	35	1.28
46684892--46685026	52	2.8	47	75	17	125	59	2	3	34	1.28
46684866--46684957	29	3.3	28	69	14	66	59	2	5	32	1.32
46684960--46685031	22	3.2	22	74	16	60	58	2	2	36	1.27
46685510--46685672	30	5.4	30	88	1	213	21	3	48	26	1.67
46686533--46686595	14	4.5	14	82	7	74	60	4	14	20	1.52
46686650--46686684	14	2.5	14	90	0	52	60	5	20	14	1.54
46686845--46686907	14	4.5	14	82	7	65	61	3	12	22	1.45
46686848--46686880	15	2.2	15	94	0	57	69	0	9	21	1.15
46686864--46686907	13	3.3	13	81	6	52	63	4	13	18	1.46
46686890--46687834	74	12.2	75	76	11	731	33	20	17	28	1.96
46687116--46687150	14	2.5	14	95	0	61	57	2	20	20	1.54
46687039--46687227	89	2.1	91	88	4	274	34	17	19	27	1.95
46687318--46688210	160	5.9	146	81	11	852	33	21	16	28	1.95
46687820--46687848	14	2.1	14	100	0	58	65	6	13	13	1.45
46687738--46687922	91	2.1	88	87	7	266	37	19	17	25	1.93
46687664--46688067	164	2.6	162	84	10	526	34	20	16	27	1.95
46687828--46688062	73	3.2	73	92	3	368	33	21	17	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46688048--46688081	14	2.5	14	90	4	52	64	8	8	17	1.47
46687591--46688225	233	2.7	235	88	3	929	34	21	16	27	1.95
46694812--46695060	50	4.8	50	85	4	284	20	29	24	26	1.99
46694811--46695060	100	2.4	104	88	6	357	20	29	24	26	1.99
46695155--46695186	13	2.5	13	94	0	55	56	12	0	31	1.37
46695399--46695455	30	1.9	30	85	0	78	31	21	3	43	1.69
46702403--46702651	50	4.8	50	84	4	275	20	29	24	25	1.99
46702402--46702651	100	2.4	104	87	6	348	20	29	24	25	1.99
46702746--46702777	13	2.5	13	94	0	55	56	12	0	31	1.37
46702987--46703045	30	2.0	30	83	3	75	28	22	5	44	1.74
46708465--46708512	16	3.1	15	90	6	69	64	2	2	31	1.16
46708461--46708512	8	6.5	8	82	8	61	65	1	1	30	1.14
46708460--46708516	24	2.4	24	79	5	71	64	1	3	29	1.20
46708623--46708676	23	2.5	22	75	13	60	57	5	5	31	1.45
46708639--46708724	25	3.7	24	79	10	81	55	5	6	31	1.50
46708751--46708883	25	5.6	25	71	13	93	58	2	3	35	1.28
46708743--46708805	16	3.8	17	74	20	53	60	0	3	36	1.13
46708740--46708809	25	2.7	26	77	6	79	60	0	2	37	1.12
46708749--46708878	46	2.7	46	75	17	122	58	2	3	35	1.29
46708812--46708883	22	3.2	22	74	16	60	58	2	2	36	1.27
46709362--46709491	30	4.3	30	81	3	138	22	3	46	26	1.69
46710176--46710338	46	3.6	46	76	6	179	28	3	19	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46710336--46710535	29	6.9	28	71	10	109	28	16	18	37	1.92
46719167--46719244	5	15.6	5	75	17	65	55	2	1	41	1.22
46719162--46719203	8	5.0	8	83	11	57	57	0	0	42	0.99
46719521--46719558	18	2.0	19	85	10	51	42	15	0	42	1.47
46736220--46736246	12	2.2	12	100	0	54	81	0	0	18	0.69
46736504--46736562	8	7.5	8	77	11	52	72	3	0	23	0.99
46737426--46737458	17	1.9	17	100	0	66	42	6	27	24	1.78
46737608--46737648	2	20.5	2	100	0	82	0	48	0	51	1.00
46740587--46740622	17	2.1	17	94	0	63	52	5	19	22	1.66
46740769--46740815	2	23.5	2	95	0	85	2	46	0	51	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216