genome.fa.s15.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  184  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57393268--57393347	25	3.2	25	81	0	97	38	17	27	16	1.91
57394269--57394428	42	3.8	42	83	3	171	31	24	15	29	1.95
57402291--57402355	25	2.6	25	75	0	76	27	24	24	23	2.00
57402307--57402417	25	4.4	25	72	4	89	36	18	26	18	1.94
57407610--57407672	20	3.2	20	71	8	56	17	25	17	39	1.91
57407547--57407776	120	1.9	120	85	3	320	20	28	16	33	1.95
57407551--57407776	40	5.7	40	79	2	213	20	28	16	33	1.95
57412432--57412482	24	2.1	24	100	0	102	19	33	9	37	1.85
57413107--57413166	30	2.0	30	100	0	120	46	16	16	20	1.84
57413344--57413421	29	2.8	28	86	5	97	21	17	21	38	1.93
57421773--57421874	41	2.5	40	85	6	132	26	25	19	28	1.99
57424716--57424825	26	4.2	26	81	4	114	20	20	23	36	1.95
57438542--57438821	128	2.2	128	86	3	377	25	37	1	35	1.63
57445245--57445284	2	20.5	2	84	5	55	5	47	0	47	1.24
57450173--57450209	18	2.1	18	100	0	74	21	16	21	40	1.91
57450691--57450757	29	2.2	30	79	10	75	47	10	2	38	1.53
57455143--57455180	16	2.4	16	86	8	51	28	2	0	68	1.03
57456673--57457064	130	3.0	130	77	3	410	39	10	10	39	1.75
57458534--57458584	21	2.5	19	76	14	57	80	3	9	5	1.01
57462494--57462540	11	4.0	12	78	10	53	34	0	2	63	1.06
57470904--57470939	17	2.1	17	89	0	54	72	8	0	19	1.10
57472005--57472096	41	2.2	41	90	0	139	30	21	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57475576--57475618	21	2.0	23	90	9	72	65	4	9	20	1.40
57476065--57476096	5	6.2	5	92	7	55	81	0	0	18	0.70
57476047--57476096	11	4.6	11	80	9	59	76	0	2	22	0.89
57497075--57497145	37	1.9	37	85	2	99	26	15	14	43	1.85
57498262--57498316	19	2.7	19	77	8	56	54	10	3	30	1.52
57498873--57498980	54	2.0	54	100	0	216	42	11	16	29	1.83
57501854--57501918	33	1.9	34	87	9	98	35	0	3	61	1.12
57514946--57515195	50	4.9	50	82	5	270	27	21	29	22	1.99
57529855--57529894	3	13.3	3	89	0	53	32	5	0	62	1.17
57531757--57531982	27	8.4	26	88	4	317	43	21	17	17	1.88
57531757--57531982	53	4.2	53	89	3	337	43	21	17	17	1.88
57531757--57531982	80	2.8	80	89	2	337	43	21	17	17	1.88
57538134--57538158	11	2.3	11	100	0	50	28	0	0	72	0.86
57540902--57540944	22	2.0	22	100	0	86	41	9	23	25	1.84
57543778--57543804	9	3.0	9	100	0	54	33	22	0	44	1.53
57544845--57544898	28	1.9	28	100	0	108	40	16	16	25	1.89
57555432--57555456	13	1.9	13	100	0	50	48	28	0	24	1.52
57557786--57557845	20	3.1	19	70	25	54	31	0	5	63	1.16
57561124--57561207	43	2.0	43	83	4	107	29	30	17	21	1.96
57568849--57568944	25	3.8	25	87	0	129	3	20	25	51	1.62
57569792--57569839	24	2.0	24	100	0	96	20	25	16	37	1.93
57570295--57570382	28	3.1	28	86	3	113	42	3	14	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57570880--57570931	26	2.0	27	84	3	70	34	23	7	34	1.83
57570879--57570931	13	4.1	13	76	9	63	35	22	7	33	1.83
57576208--57576317	33	3.3	33	87	1	139	12	10	36	40	1.77
57576268--57576354	36	2.5	36	87	5	117	16	10	36	36	1.82
57577848--57577887	19	2.1	19	95	0	71	20	30	32	17	1.95
57583186--57583224	13	2.9	14	84	7	62	48	5	25	20	1.70
57587274--57587588	41	7.7	41	88	0	450	28	20	27	23	1.99
57589397--57589466	35	2.0	35	88	0	104	34	14	17	34	1.90
57591574--57591624	20	2.7	18	77	14	57	47	0	0	52	1.00
57591725--57591812	38	2.2	40	84	4	108	38	2	5	53	1.37
57595394--57595419	3	8.7	3	100	0	52	69	0	0	30	0.89
57598671--57598707	19	1.9	19	94	0	65	32	18	5	43	1.73
57600482--57600538	18	3.2	17	76	18	55	47	0	26	26	1.52
57600482--57600525	16	2.6	16	82	13	52	45	0	22	31	1.53
57602258--57602305	21	2.3	21	85	0	60	18	25	8	47	1.76
57603703--57603775	25	2.9	25	95	0	128	1	23	26	49	1.58
57603747--57603785	19	2.1	19	95	0	69	0	25	23	51	1.49
57605101--57605188	28	3.1	28	86	3	113	42	3	14	39	1.63
57605687--57605737	13	3.9	13	80	10	68	35	25	7	31	1.85
57605686--57605737	26	2.0	27	88	3	79	34	25	7	32	1.84
57609303--57609343	17	2.4	17	95	4	73	39	0	12	48	1.41
57610743--57610852	33	3.3	33	88	1	148	12	10	36	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57610803--57610889	36	2.5	36	87	5	117	16	10	36	36	1.82
57612363--57612399	19	1.9	19	94	0	65	24	24	32	18	1.97
57616366--57616475	33	3.3	33	88	1	148	11	10	37	40	1.75
57616426--57616512	36	2.5	36	88	5	126	14	10	37	36	1.81
57618008--57618045	19	2.0	19	94	0	67	21	28	31	18	1.97
57619333--57619371	13	2.9	14	84	7	62	48	5	25	20	1.70
57622011--57622080	35	2.0	35	88	0	104	34	14	17	34	1.90
57627537--57627568	3	10.7	3	100	0	64	68	0	0	31	0.90
57630671--57630728	28	2.1	28	90	0	89	53	10	6	29	1.61
57646817--57647002	44	4.2	44	91	2	293	31	22	20	25	1.98
57650586--57650697	42	2.7	42	97	0	206	46	18	20	14	1.84
57652691--57652799	41	2.6	41	90	7	159	27	17	29	25	1.97
57655606--57655659	22	2.4	21	79	17	56	66	3	0	29	1.09
57657443--57657513	21	3.5	20	71	5	61	53	14	11	21	1.71
57657447--57657661	42	5.0	43	77	7	222	54	12	9	22	1.66
57657471--57657660	89	2.2	85	84	9	242	55	12	9	22	1.65
57659076--57659124	19	2.5	20	86	3	64	61	2	0	36	1.08
57659308--57659344	9	4.1	9	92	0	65	45	13	10	29	1.77
57659559--57659618	30	2.0	31	86	3	86	20	40	0	40	1.52
57665600--57665637	18	2.1	18	85	14	51	52	0	0	47	1.00
57676907--57677042	40	3.5	40	79	3	150	36	22	21	19	1.96
57676909--57677042	39	3.4	39	80	8	155	35	23	21	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57677163--57677192	13	2.2	14	94	5	53	20	0	26	53	1.46
57677216--57677250	15	2.4	14	86	9	52	22	0	31	45	1.53
57677245--57677300	21	2.6	21	77	2	58	17	0	33	48	1.48
57678043--57678178	7	19.1	7	69	8	60	19	2	37	40	1.64
57678043--57678178	64	2.1	64	80	0	146	19	2	37	40	1.64
57684741--57684831	43	2.1	43	87	2	130	34	10	9	45	1.73
57685180--57685297	42	2.8	43	80	6	116	23	11	27	37	1.90
57685217--57685297	43	1.9	42	84	2	108	24	12	27	35	1.91
57689010--57689043	16	2.1	16	88	0	50	29	32	14	23	1.94
57690964--57690994	14	2.1	15	94	5	55	19	45	0	35	1.51
57694338--57694408	27	2.7	26	79	14	74	26	8	40	23	1.83
57700446--57700472	14	1.9	14	100	0	54	29	7	11	51	1.64
57707484--57707614	68	1.9	68	93	0	226	22	14	19	44	1.86
57708505--57708557	14	3.6	14	75	7	52	49	1	0	49	1.12
57708526--57708567	16	2.6	16	85	10	59	52	2	0	45	1.13
57710414--57710540	60	2.1	59	82	5	157	32	19	11	36	1.88
57714206--57714316	42	2.7	42	79	5	111	15	23	17	44	1.86
57714499--57714774	139	2.0	139	100	0	552	29	18	16	35	1.93
57720456--57720567	25	4.5	25	95	0	188	29	22	23	25	1.99
57721130--57721185	25	2.2	25	81	9	60	17	12	25	44	1.84
57725360--57725473	9	12.7	9	89	3	167	42	23	8	24	1.82
57727043--57727363	68	4.7	68	79	1	311	36	18	20	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57731470--57731522	12	4.2	12	76	9	61	50	0	11	37	1.38
57731990--57732047	30	1.9	30	85	0	80	55	10	1	32	1.44
57733769--57733820	24	2.2	24	89	0	77	53	9	1	34	1.45
57734462--57734670	102	2.1	101	92	2	348	57	4	4	33	1.39
57736863--57736890	3	9.3	3	100	0	56	64	0	35	0	0.94
57738755--57738839	20	4.2	19	76	14	73	52	4	2	40	1.35
57738782--57738830	19	2.6	19	84	9	57	53	4	2	40	1.32
57738821--57738858	18	2.2	18	90	4	60	55	0	0	44	0.99
57739184--57739224	21	2.0	21	90	9	66	53	9	12	24	1.68
57752686--57752760	31	2.4	31	90	0	123	50	16	8	25	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216