genome.fa.s15.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  108  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34122309--34122363	27	2.0	27	92	0	92	34	5	7	52	1.52
34129929--34130433	47	10.6	47	92	2	803	28	29	8	33	1.86
34129929--34130433	96	5.3	94	94	1	803	28	29	8	33	1.86
34133880--34134227	40	8.7	40	93	0	554	25	28	21	23	1.99
34134281--34134390	38	3.0	38	89	6	156	24	27	18	30	1.98
34136817--34137321	47	10.6	47	93	2	812	29	29	8	33	1.86
34136817--34137321	96	5.3	94	94	1	812	29	29	8	33	1.86
34145655--34145723	25	2.8	25	95	0	120	27	23	21	27	1.99
34148949--34148989	19	2.2	19	95	0	73	65	4	26	2	1.25
34153632--34153659	13	2.2	13	100	0	56	64	14	7	14	1.48
34156318--34156437	56	2.1	57	96	1	224	39	16	19	25	1.92
34163671--34163722	21	2.5	22	71	9	54	59	9	0	30	1.29
34167276--34167358	26	3.2	26	83	10	107	27	25	6	40	1.79
34167866--34167947	41	2.0	41	90	0	128	32	20	20	25	1.97
34175908--34175962	15	3.8	15	85	2	69	1	21	1	74	1.01
34178041--34178086	13	3.6	13	91	2	76	10	4	6	78	1.08
34178041--34178086	12	3.5	13	85	8	67	10	4	6	78	1.08
34180989--34181092	3	35.3	3	83	1	122	67	27	1	2	1.16
34182507--34182603	32	3.0	32	100	0	194	31	18	12	37	1.88
34187139--34187203	32	2.0	32	100	0	130	32	18	12	36	1.88
34189684--34189735	26	2.0	26	96	0	95	13	23	34	28	1.92
34189607--34189971	102	3.6	104	94	2	609	18	20	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34197254--34197305	26	2.0	26	96	0	95	13	23	34	28	1.92
34197180--34197539	100	3.6	104	93	4	573	18	20	30	30	1.97
34199817--34199867	14	3.5	15	86	10	79	58	0	33	7	1.27
34200698--34200737	2	20.0	2	94	0	71	0	47	0	52	1.00
34204016--34204096	26	3.1	26	92	0	126	35	22	20	20	1.96
34204237--34204323	28	3.1	28	68	15	81	26	13	18	41	1.88
34204248--34204338	27	3.3	27	69	14	78	26	13	20	39	1.89
34204237--34204350	55	2.1	55	93	0	192	24	14	17	43	1.86
34206820--34206885	32	2.1	32	94	5	116	39	22	6	31	1.79
34209530--34209573	1	44.0	1	88	0	61	93	2	2	2	0.47
34215276--34215607	109	3.1	106	83	13	411	19	20	28	31	1.97
34221430--34221469	17	2.4	17	87	8	55	17	17	32	32	1.93
34231599--34231636	17	2.3	17	86	13	53	23	13	7	55	1.64
34237971--34238182	51	4.2	51	77	6	223	31	25	16	26	1.97
34237973--34238157	101	1.8	101	90	3	300	30	25	17	25	1.97
34240083--34240150	33	2.1	33	91	0	109	26	13	35	25	1.92
34247543--34247635	45	2.1	45	93	0	159	35	15	24	24	1.94
34259369--34259557	40	4.8	40	84	0	236	35	19	26	19	1.95
34260755--34260827	38	1.9	38	86	5	103	41	21	15	21	1.90
34261688--34261718	12	2.6	12	100	0	62	61	9	6	22	1.50
34261903--34262029	43	3.0	43	91	0	191	32	18	22	26	1.97
34263134--34263178	22	2.0	22	83	8	56	55	0	35	8	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34265783--34265907	43	2.9	43	79	4	162	36	19	20	24	1.95
34270182--34270223	20	2.1	20	90	0	66	19	19	21	40	1.92
34279352--34279430	25	3.2	25	90	0	122	30	26	18	24	1.98
34280801--34280841	13	3.2	13	89	0	64	48	14	12	24	1.78
34289050--34289383	27	12.4	27	72	9	168	35	19	20	23	1.95
34289066--34289368	54	5.6	54	76	5	209	36	21	19	22	1.95
34289075--34289383	81	3.8	81	80	3	257	37	19	20	22	1.95
34289365--34289415	26	1.9	27	88	4	77	23	17	21	37	1.94
34289405--34289462	24	2.4	24	91	0	89	20	8	22	48	1.77
34289633--34289833	32	6.3	32	81	1	181	21	18	19	40	1.92
34289665--34289834	63	2.7	62	75	10	157	21	18	19	40	1.91
34289826--34289890	22	3.0	22	69	0	58	18	20	20	41	1.91
34290695--34290727	18	1.9	17	88	11	50	42	12	15	30	1.83
34293199--34293306	29	3.8	28	80	6	108	21	16	22	39	1.92
34309228--34309435	104	2.0	104	96	0	380	25	24	15	34	1.94
34318890--34319042	53	2.9	53	89	0	243	23	23	9	43	1.83
34322157--34322209	25	2.1	25	96	0	97	26	3	16	52	1.61
34328319--34328361	17	2.5	18	77	11	54	39	4	0	55	1.20
34328348--34328374	13	2.1	13	100	0	54	37	0	0	62	0.95
34340299--34340508	60	3.5	60	77	8	151	37	12	22	27	1.90
34340629--34340690	28	2.2	29	82	5	83	32	17	19	30	1.95
34349984--34350014	16	1.9	16	100	0	62	12	19	22	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34350636--34350707	31	2.3	31	85	0	90	41	19	20	18	1.90
34351867--34351912	14	3.3	14	80	17	51	30	0	17	52	1.45
34360018--34360197	90	2.0	90	94	0	315	34	17	14	33	1.90
34369348--34369395	23	2.1	23	100	0	96	43	0	12	43	1.42
34374423--34374463	21	1.9	21	85	5	55	36	12	31	19	1.89
34380102--34380206	10	10.2	11	73	16	68	64	0	0	34	1.00
34380126--34380332	10	21.6	9	68	17	80	60	3	0	35	1.15
34380127--34380190	9	6.8	9	75	15	58	65	0	0	34	0.93
34380137--34380204	20	3.4	20	85	6	93	64	0	0	35	0.94
34380103--34380207	20	5.2	20	79	6	81	64	0	0	34	1.00
34380113--34380189	29	2.6	30	85	10	104	66	0	0	33	0.92
34380260--34380332	9	7.8	9	80	7	74	58	6	0	34	1.24
34380266--34380325	28	2.1	29	93	3	104	61	6	0	31	1.22
34380279--34380332	19	2.8	19	88	0	90	61	7	0	31	1.24
34380266--34380332	28	2.4	28	90	5	91	61	7	0	31	1.24
34380845--34380887	10	4.5	10	94	2	63	27	0	6	65	1.18
34380845--34380887	19	2.2	20	88	8	63	27	0	6	65	1.18
34388787--34388864	36	2.1	37	85	2	104	25	29	20	24	1.99
34388982--34389378	47	8.7	47	83	10	479	28	29	9	32	1.88
34389263--34389322	18	3.3	18	65	17	52	35	28	3	33	1.74
34389264--34389337	36	2.1	36	100	0	148	33	31	5	29	1.80
34388982--34389378	132	2.9	134	83	10	454	28	29	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34393199--34393669	40	11.8	40	90	0	748	26	26	21	25	1.99
34481041--34481227	104	1.9	98	82	11	229	31	8	31	29	1.87
34484792--34484990	98	2.0	98	96	0	362	33	8	30	28	1.86
34477349--34492613	616	24.6	616	87	7	21217	28	12	24	34	1.92
34493372--34493450	37	2.1	37	88	0	113	26	31	17	24	1.97
34493569--34494027	47	9.7	47	95	0	783	29	30	8	32	1.86
34493571--34494027	239	1.9	235	94	1	797	29	29	8	32	1.87
34496239--34498793	617	4.1	616	95	0	4555	28	12	24	34	1.92
34504545--34504584	21	1.9	21	94	0	71	27	22	17	32	1.96
34505735--34505772	15	2.4	16	86	8	51	84	0	13	2	0.73
34512332--34512435	25	4.2	25	69	9	77	25	16	19	38	1.92
34516520--34516652	27	4.9	27	84	3	151	27	19	16	36	1.93
34516551--34516651	27	3.7	28	90	4	152	26	19	15	37	1.92
34529701--34529742	20	2.2	20	91	4	68	38	14	9	38	1.78
34547525--34547567	22	2.0	21	86	4	59	51	27	0	20	1.48
34548392--34548439	17	2.8	17	78	12	53	33	0	0	66	0.92
34548408--34548469	24	2.6	24	76	14	65	30	0	0	69	0.89
34548409--34548461	26	2.1	26	86	6	74	32	0	0	67	0.91
34548985--34549858	114	7.7	113	83	5	998	35	19	20	24	1.96
34548985--34549859	342	2.6	342	84	4	1126	35	19	20	24	1.96
34549841--34549878	20	1.9	20	88	0	58	44	21	7	26	1.79
34550593--34550636	21	2.1	21	83	8	54	25	0	36	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34551271--34551650	191	2.0	191	93	0	652	17	25	12	43	1.85
34552960--34553007	25	1.9	25	86	0	69	47	18	0	33	1.49
34552930--34553328	9	45.7	9	73	10	283	47	17	1	32	1.58
34553314--34553369	26	2.2	26	96	0	103	39	12	7	41	1.70
34569238--34569288	21	2.4	21	90	0	75	33	15	45	5	1.71
34569670--34569829	42	3.9	42	86	4	209	32	23	21	22	1.98
34572522--34572592	20	3.7	20	79	9	76	57	0	4	38	1.18
34572543--34572589	17	2.5	19	83	10	62	57	0	6	36	1.24
34583606--34583657	22	2.2	25	86	13	83	51	1	0	46	1.12
34591650--34591711	30	2.1	30	100	0	124	46	20	0	32	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216