genome.fa.s15.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  114  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36295426--36295468	18	2.4	18	84	0	50	18	4	18	58	1.56
36298666--36298715	23	2.2	24	82	10	61	68	2	26	4	1.18
36314610--36314643	15	2.3	15	90	10	52	14	20	0	64	1.28
36324947--36324973	13	2.1	13	100	0	54	29	0	7	62	1.22
36325073--36325365	50	5.8	50	87	0	406	25	20	31	21	1.98
36344030--36344083	20	2.8	20	85	2	65	14	29	12	42	1.83
36345610--36345849	39	6.3	39	82	2	254	15	29	18	37	1.91
36345613--36345849	77	3.1	77	85	1	298	15	29	18	37	1.91
36345726--36345819	19	4.8	20	66	10	61	15	32	18	32	1.92
36351736--36351782	20	2.3	20	92	3	76	53	10	14	21	1.71
36352653--36352861	39	5.4	39	82	2	226	16	31	16	36	1.91
36352656--36352804	77	1.9	77	87	2	219	14	31	18	35	1.91
36368435--36368674	50	4.7	50	77	6	180	23	26	21	28	1.99
36370893--36370981	42	2.1	42	97	0	169	28	1	25	44	1.61
36374646--36374683	16	2.2	18	86	9	53	50	10	0	39	1.37
36378920--36378952	17	1.9	17	100	0	66	42	9	0	48	1.35
36383466--36383527	31	2.0	31	100	0	124	32	9	16	41	1.80
36389633--36389694	31	2.0	31	100	0	124	32	9	16	41	1.80
36391477--36391549	28	2.6	28	77	16	71	35	5	2	56	1.37
36393199--36393237	19	2.2	17	86	9	51	28	2	5	64	1.28
36395941--36395995	25	2.3	25	75	6	60	45	1	1	50	1.22
36396115--36396162	18	2.8	17	85	14	64	50	2	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36396159--36396201	23	2.0	22	86	13	63	41	0	0	58	0.98
36396155--36396208	23	2.3	23	71	9	56	38	0	0	61	0.96
36396313--36396356	23	1.9	23	85	0	61	61	0	4	34	1.16
36398073--36398130	6	9.8	6	81	3	55	13	6	1	77	1.05
36398086--36398184	50	1.9	50	84	15	130	19	6	5	69	1.28
36398337--36398404	16	4.4	16	78	10	70	1	63	0	35	1.04
36398382--36398481	38	2.6	38	91	1	164	7	54	0	39	1.28
36398382--36398482	4	26.5	4	82	9	77	6	53	0	39	1.28
36403240--36403314	21	3.4	21	66	20	62	45	0	10	44	1.38
36412300--36412337	20	1.9	20	88	0	58	18	26	0	55	1.43
36431426--36431525	33	3.1	32	81	5	128	45	0	14	41	1.44
36431426--36431525	32	3.1	34	84	5	118	45	0	14	41	1.44
36435328--36435358	16	1.9	16	93	0	53	29	12	25	32	1.93
36446922--36446949	14	2.0	14	100	0	56	35	7	0	57	1.26
36447398--36447435	19	2.0	19	85	10	51	21	39	0	39	1.53
36457498--36457527	13	2.3	13	100	0	60	80	0	13	6	0.91
36464329--36464375	24	1.9	25	83	12	62	31	21	2	44	1.64
36468348--36468523	56	3.1	56	97	0	325	45	9	22	22	1.81
36469652--36469836	79	2.3	81	84	7	236	24	22	27	25	2.00
36469653--36469836	40	4.6	40	83	9	216	24	22	27	25	2.00
36469705--36469869	79	2.1	79	84	6	210	26	21	27	25	1.99
36475625--36475744	56	2.1	56	98	0	231	45	10	22	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36476872--36477056	40	4.6	39	83	5	196	24	22	27	24	2.00
36476872--36477056	79	2.3	81	84	7	227	24	22	27	24	2.00
36476925--36477089	79	2.1	79	84	6	210	26	21	27	24	1.99
36479034--36479062	14	2.0	15	93	6	51	6	34	0	58	1.25
36479343--36479402	21	3.0	20	73	14	52	20	30	6	43	1.77
36491097--36491139	21	2.0	21	95	0	77	25	18	25	30	1.98
36494619--36494836	29	7.5	28	72	10	127	38	12	25	24	1.90
36494668--36494836	58	2.9	56	78	6	176	38	13	26	21	1.91
36494671--36494833	87	1.9	88	86	1	238	38	13	25	22	1.91
36494679--36494849	29	5.9	29	73	8	132	38	14	26	21	1.91
36497205--36497284	30	2.7	30	96	0	142	23	2	26	47	1.64
36503477--36503611	43	3.1	43	78	5	130	24	15	25	34	1.95
36503441--36503611	86	2.0	86	82	6	213	25	14	25	34	1.94
36503467--36503599	42	3.1	43	77	5	135	25	15	24	34	1.94
36507628--36507900	136	2.0	136	96	0	501	42	12	17	27	1.85
36508205--36508254	21	2.3	21	86	10	66	56	0	0	44	0.99
36517488--36517635	52	2.8	53	84	4	192	32	11	25	30	1.91
36517760--36518019	28	9.3	28	81	0	261	26	16	23	34	1.95
36520950--36520993	20	2.2	20	91	4	70	50	2	2	45	1.27
36520954--36521003	20	2.5	20	80	0	64	48	4	2	46	1.32
36523910--36523965	22	2.5	22	85	5	78	33	14	26	25	1.94
36525067--36525103	18	2.1	17	90	5	56	2	18	0	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36532124--36532165	9	4.6	9	90	3	66	28	14	23	33	1.94
36532241--36532448	54	3.8	54	81	6	177	30	14	26	27	1.95
36532329--36532451	54	2.3	54	95	0	219	26	15	28	29	1.96
36532684--36532756	28	2.6	28	86	6	94	15	15	27	42	1.86
36537675--36537738	21	3.0	21	86	0	92	7	29	48	14	1.71
36537844--36537905	28	2.2	28	72	13	74	59	0	0	40	0.97
36540067--36540229	28	5.8	28	76	12	154	33	16	25	25	1.96
36540057--36540244	57	3.4	57	83	7	251	35	17	23	24	1.95
36540056--36540270	113	1.9	113	84	5	292	34	17	22	25	1.95
36541781--36542029	50	4.8	50	85	4	284	20	29	24	26	1.99
36541780--36542029	100	2.4	104	88	6	357	20	29	24	26	1.99
36542124--36542155	13	2.5	13	94	0	55	56	12	0	31	1.37
36542366--36542423	30	1.9	30	86	6	82	31	24	1	43	1.64
36549224--36549258	14	2.6	14	90	4	54	37	0	2	60	1.12
36549578--36549613	16	2.2	16	90	0	54	36	8	2	52	1.46
36549733--36549841	35	3.2	34	67	21	84	11	8	13	66	1.45
36549835--36549868	16	2.1	16	100	0	68	17	11	14	55	1.68
36549712--36549846	67	2.0	67	94	0	234	13	8	13	64	1.49
36550200--36550520	109	3.0	109	89	1	486	31	15	19	33	1.93
36554240--36554324	40	2.2	40	83	10	104	49	2	3	44	1.32
36564020--36564673	322	2.0	324	94	0	1150	38	15	15	30	1.88
36564730--36564780	25	2.0	25	100	0	102	21	23	11	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36566880--36566920	18	2.2	20	86	8	59	46	0	4	48	1.23
36566971--36567016	24	1.9	24	95	0	83	28	13	10	47	1.76
36567464--36567748	151	1.9	149	81	8	346	43	9	7	39	1.65
36567496--36567781	151	1.9	152	79	11	331	44	11	7	37	1.68
36581968--36582055	42	2.1	42	97	0	167	18	15	27	38	1.91
36583225--36583274	21	2.3	23	80	13	61	42	4	10	44	1.56
36583224--36583274	20	2.4	22	83	6	61	43	3	9	43	1.56
36582864--36583330	154	3.1	149	80	8	491	43	4	9	42	1.58
36583803--36583832	5	6.0	5	100	0	60	0	60	0	40	0.97
36585372--36585421	20	2.3	22	83	10	59	24	4	16	56	1.57
36585995--36586034	19	2.0	19	85	9	53	22	2	5	70	1.19
36587439--36587476	19	2.0	20	89	5	60	60	5	2	31	1.33
36603562--36603873	42	7.2	42	80	7	345	21	19	23	35	1.96
36603777--36603873	51	1.9	51	87	8	144	22	18	23	35	1.96
36604629--36605074	147	3.0	148	80	11	482	42	4	9	43	1.58
36605659--36605713	21	2.6	21	85	8	67	20	10	1	67	1.30
36608081--36608224	50	2.9	48	83	4	171	23	17	27	31	1.97
36608094--36608256	51	3.2	50	75	12	154	25	17	25	32	1.97
36608275--36608369	45	2.1	45	86	0	136	26	17	24	31	1.97
36616152--36616442	50	5.8	50	82	2	291	27	20	29	22	1.99
36618454--36618523	27	2.6	27	81	4	70	25	25	14	34	1.94
36622837--36622879	22	2.0	21	81	4	50	41	32	9	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36623754--36623873	56	2.1	56	98	0	231	45	9	23	22	1.81
36625000--36625182	79	2.3	81	83	7	223	24	22	27	24	2.00
36625001--36625184	40	4.6	40	82	9	207	24	22	28	24	2.00
36625053--36625217	79	2.1	79	83	6	201	26	21	27	24	1.99
36631604--36631722	56	2.1	56	96	1	222	44	9	23	22	1.81
36632846--36633028	39	4.7	40	82	7	207	24	21	28	25	1.99
36632898--36633061	79	2.1	79	82	6	199	26	20	28	25	1.99
36637706--36637806	49	2.1	49	92	0	166	26	25	6	40	1.81
36638182--36638248	30	2.2	30	86	0	98	17	29	25	26	1.98
36638216--36638240	13	1.9	13	100	0	50	8	24	32	36	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216